Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.34974 * 116.99934 * 2 1 4 4 O 1.21709 * 120.00414 * 359.97438 * 3 2 1 5 5 C 1.41475 * 119.99594 * 179.97438 * 3 2 1 6 6 S 1.75811 * 125.48922 * 355.93849 * 5 3 2 7 7 C 1.70563 * 91.68892 * 179.73327 * 6 5 3 8 8 C 1.33576 * 111.20861 * 0.02562 * 7 6 5 9 9 C 1.50701 * 122.44942 * 180.02562 * 8 7 6 10 10 C 1.37549 * 125.48304 * 175.62528 * 5 3 2 11 11 N 1.39502 * 123.51023 * 0.26649 * 10 5 3 12 12 C 1.34774 * 120.00048 * 232.69712 * 11 10 5 13 13 O 1.21283 * 120.00135 * 356.13564 * 12 11 10 14 14 C 1.50702 * 119.99789 * 176.13338 * 12 11 10 15 15 H 1.08998 * 109.47406 * 300.00140 * 14 12 11 16 16 C 1.52998 * 109.46720 * 60.00494 * 14 12 11 17 17 N 1.46900 * 109.46757 * 179.97438 * 14 12 11 18 18 C 1.46900 * 110.99745 * 150.99315 * 17 14 12 19 19 H 1.09004 * 109.47300 * 31.70625 * 18 17 14 20 20 C 1.53001 * 109.47117 * 151.70260 * 18 17 14 21 21 C 1.50699 * 109.47155 * 271.70021 * 18 17 14 22 22 H 1.08004 * 119.99967 * 0.02562 * 21 18 17 23 23 C 1.37879 * 119.99942 * 179.97438 * 21 18 17 24 24 N 1.31513 * 120.00246 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 119.99851 * 180.02562 * 23 21 18 26 26 H 1.48500 * 109.47307 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47210 * 120.00313 * 25 23 21 28 28 H 1.48502 * 109.47074 * 240.00349 * 25 23 21 29 29 H 1.08996 * 109.47046 * 300.00472 * 1 2 3 30 30 H 1.09008 * 109.47198 * 60.00054 * 1 2 3 31 31 H 1.08994 * 109.47643 * 179.97438 * 1 2 3 32 32 H 1.07999 * 124.39260 * 180.02562 * 7 6 5 33 33 H 1.09011 * 109.47234 * 84.50090 * 9 8 7 34 34 H 1.08999 * 109.46978 * 204.50059 * 9 8 7 35 35 H 1.08997 * 109.47418 * 324.49941 * 9 8 7 36 36 H 0.96998 * 119.99791 * 52.69561 * 11 10 5 37 37 H 1.09000 * 109.47031 * 183.99993 * 16 14 12 38 38 H 1.08998 * 109.47332 * 303.99588 * 16 14 12 39 39 H 1.08995 * 109.47572 * 64.00362 * 16 14 12 40 40 H 1.00899 * 111.00127 * 274.94652 * 17 14 12 41 41 H 1.08996 * 109.47247 * 64.93539 * 20 18 17 42 42 H 1.09001 * 109.47339 * 184.93231 * 20 18 17 43 43 H 1.09002 * 109.47342 * 304.93493 * 20 18 17 44 44 H 0.96996 * 120.00107 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3789 2.2234 -0.0005 5 6 3.4546 1.2766 0.0005 6 16 4.5484 -0.0960 0.1027 7 6 5.9144 0.9227 0.0279 8 6 5.5557 2.2059 -0.0667 9 6 6.5635 3.3233 -0.1494 10 6 4.1935 2.4336 -0.0848 11 7 3.6263 3.7045 -0.1793 12 6 3.9989 4.5368 -1.1717 13 8 4.8773 4.2084 -1.9408 14 6 3.3240 5.8754 -1.3258 15 1 2.2571 5.7273 -1.4929 16 6 3.5315 6.7004 -0.0541 17 7 3.9054 6.5878 -2.4714 18 6 2.9226 7.4926 -3.0825 19 1 2.2455 7.8660 -2.3142 20 6 3.6501 8.6690 -3.7366 21 6 2.1341 6.7459 -4.1274 22 1 2.3420 5.7034 -4.3181 23 6 1.1466 7.3934 -4.8392 24 7 0.8932 8.6628 -4.6066 25 14 0.1688 6.4677 -6.1339 26 1 0.6439 5.0624 -6.2022 27 1 -1.2716 6.4857 -5.7731 28 1 0.3563 7.1188 -7.4553 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 6.9367 0.5752 0.0537 33 1 6.8795 3.4517 -1.1848 34 1 6.1113 4.2477 0.2098 35 1 7.4287 3.0786 0.4668 36 1 2.9637 3.9893 0.4694 37 1 2.9843 7.6395 -0.1370 38 1 3.1642 6.1407 0.8060 39 1 4.5935 6.9089 0.0745 40 1 4.7386 7.0885 -2.2009 41 1 4.2608 8.3046 -4.5626 42 1 2.9189 9.3842 -4.1133 43 1 4.2888 9.1562 -2.9999 44 1 0.1987 9.1184 -5.1076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878821112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -77.488880 kcal Electronic energy + Delta-G solvation = -28040.467572 eV Core-core repulsion = 24085.231825 eV Total energy + Delta-G solvation = -3955.235747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96777 -40.04890 -38.01313 -36.51899 -35.92725 -34.02957 -32.91217 -31.37959 -30.40458 -28.39684 -27.35444 -26.88461 -25.14313 -24.95345 -23.37755 -21.27425 -20.54429 -20.17261 -18.94698 -18.72429 -17.35690 -16.87687 -16.64462 -16.31221 -15.96838 -15.53905 -14.94900 -14.63204 -14.34414 -14.15413 -13.91525 -13.59399 -13.53955 -13.37565 -13.31499 -12.65506 -12.62256 -12.32579 -12.13686 -12.10154 -12.03939 -11.93743 -11.35979 -11.18690 -10.95434 -10.87268 -10.86399 -10.68169 -10.60195 -10.34895 -10.14727 -9.91887 -9.88896 -9.36021 -9.06680 -8.84703 -8.37088 -8.19487 -7.24082 -5.95213 -3.97536 0.12010 1.26551 1.68078 2.04129 2.64472 2.77489 3.06935 3.32631 3.34576 3.42147 3.49978 4.48681 4.63890 4.87272 4.93209 5.00557 5.08365 5.09963 5.17304 5.34441 5.35547 5.38006 5.44771 5.54143 5.63432 5.65911 5.78366 5.93568 6.09899 6.20091 6.26214 6.28996 6.34587 6.65143 6.74669 6.95709 7.02331 7.36638 7.56547 7.63069 7.74773 7.95988 8.22819 8.35921 8.53557 8.73206 9.11313 9.67817 11.11452 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003672 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.837653 B = 7623.713124 C = 9089.147747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.542 3.458 4 O -0.496 6.496 5 C -0.313 4.313 6 S 0.251 5.749 7 C -0.219 4.219 8 C -0.110 4.110 9 C -0.084 4.084 10 C 0.252 3.748 11 N -0.665 5.665 12 C 0.523 3.477 13 O -0.493 6.493 14 C 0.081 3.919 15 H 0.112 0.888 16 C -0.176 4.176 17 N -0.661 5.661 18 C 0.213 3.787 19 H 0.006 0.994 20 C -0.141 4.141 21 C -0.492 4.492 22 H 0.062 0.938 23 C 0.056 3.944 24 N -0.898 5.898 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.286 1.286 28 H -0.285 1.285 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.416 0.584 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.324 0.676 41 H 0.037 0.963 42 H 0.087 0.913 43 H 0.006 0.994 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -16.142 15.597 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.388 3.612 4 O -0.386 6.386 5 C -0.433 4.433 6 S 0.520 5.480 7 C -0.358 4.358 8 C -0.124 4.124 9 C -0.143 4.143 10 C 0.139 3.861 11 N -0.316 5.316 12 C 0.310 3.690 13 O -0.363 6.363 14 C -0.034 4.034 15 H 0.130 0.870 16 C -0.235 4.235 17 N -0.292 5.292 18 C 0.107 3.893 19 H 0.024 0.976 20 C -0.199 4.199 21 C -0.531 4.531 22 H 0.080 0.920 23 C -0.144 4.144 24 N -0.538 5.538 25 Si 0.722 3.278 26 H -0.198 1.198 27 H -0.212 1.212 28 H -0.211 1.211 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.192 0.808 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.142 0.858 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.025 0.975 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.586 -17.980 14.564 24.058 hybrid contribution -1.014 1.920 0.057 2.172 sum 5.572 -16.061 14.621 22.423 Atomic orbital electron populations 1.22896 0.76460 1.03590 1.02763 1.86159 1.23619 1.32543 1.85017 1.18187 0.87162 0.81974 0.73831 1.90923 1.66131 1.35368 1.46196 1.22325 0.95156 0.98309 1.27545 1.83008 0.91973 1.05670 1.67393 1.25082 1.05336 0.97495 1.07850 1.18642 0.93393 0.95917 1.04448 1.20539 0.95558 0.94755 1.03450 1.16831 0.90535 0.84928 0.93780 1.43504 1.44681 1.11697 1.31750 1.21409 0.82569 0.86290 0.78704 1.90666 1.29119 1.75427 1.41096 1.21344 1.00549 0.90062 0.91476 0.86989 1.22496 1.02157 1.01485 0.97388 1.60282 1.08291 1.34174 1.26408 1.19233 0.88318 0.88441 0.93339 0.97638 1.21946 0.99428 0.99844 0.98716 1.21254 1.15747 0.97310 1.18743 0.91982 1.24932 0.97203 0.94951 0.97362 1.69893 1.32560 1.09399 1.41996 0.86501 0.79609 0.80200 0.81508 1.19797 1.21222 1.21085 0.92055 0.91829 0.88067 0.80793 0.89431 0.91977 0.92160 0.74538 0.91015 0.92545 0.92332 0.85840 0.94369 0.89436 0.97515 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.45 101.05 1.06 1.41 16 2 O -0.36 -4.40 10.23 -41.24 -0.42 -4.82 16 3 C 0.54 7.93 7.72 31.96 0.25 8.18 16 4 O -0.50 -8.35 15.04 -19.43 -0.29 -8.64 16 5 C -0.31 -4.28 6.28 -38.60 -0.24 -4.52 16 6 S 0.25 2.48 22.82 -107.50 -2.45 0.03 16 7 C -0.22 -2.19 10.66 29.10 0.31 -1.88 16 8 C -0.11 -1.40 5.40 -106.30 -0.57 -1.97 16 9 C -0.08 -1.03 8.33 36.01 0.30 -0.73 16 10 C 0.25 3.66 5.91 -84.66 -0.50 3.16 16 11 N -0.67 -10.14 4.10 -10.46 -0.04 -10.18 16 12 C 0.52 9.44 6.04 -10.99 -0.07 9.37 16 13 O -0.49 -10.20 13.36 5.55 0.07 -10.13 16 14 C 0.08 1.49 2.80 -68.86 -0.19 1.30 16 15 H 0.11 2.32 7.70 -51.93 -0.40 1.92 16 16 C -0.18 -2.52 9.12 37.16 0.34 -2.18 16 17 N -0.66 -14.33 5.56 -102.17 -0.57 -14.90 16 18 C 0.21 5.34 2.41 -68.86 -0.17 5.17 16 19 H 0.01 0.16 7.44 -51.93 -0.39 -0.23 16 20 C -0.14 -3.40 8.90 37.16 0.33 -3.07 16 21 C -0.49 -13.95 8.69 -34.44 -0.30 -14.25 16 22 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 23 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 24 N -0.90 -25.80 11.37 55.43 0.63 -25.17 16 25 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 26 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.06 0.66 8.13 -51.92 -0.42 0.24 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.09 1.24 7.19 -51.92 -0.37 0.87 16 34 H 0.06 0.80 6.87 -51.93 -0.36 0.45 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.42 5.69 7.30 -40.82 -0.30 5.39 16 37 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16 38 H 0.06 0.66 7.37 -51.93 -0.38 0.28 16 39 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.32 6.42 7.86 -39.29 -0.31 6.11 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 2.31 6.22 -51.93 -0.32 1.98 16 43 H 0.01 0.12 8.03 -51.93 -0.42 -0.29 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -33.30 378.05 -8.10 -41.41 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.15 Total: 8.01 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 0.45 Total: 1.47 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.02 Total: -50.25 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.64 Total: -23.59 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.45 Total: 0.03 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.30 -8.10 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.083 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds