Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.34974 * 116.99934 * 2 1 4 4 O 1.21709 * 120.00414 * 359.97438 * 3 2 1 5 5 C 1.41475 * 119.99594 * 179.97438 * 3 2 1 6 6 S 1.75811 * 125.48922 * 355.93849 * 5 3 2 7 7 C 1.70563 * 91.68892 * 179.73327 * 6 5 3 8 8 C 1.33576 * 111.20861 * 0.02562 * 7 6 5 9 9 C 1.50701 * 122.44942 * 180.02562 * 8 7 6 10 10 C 1.37549 * 125.48304 * 175.62528 * 5 3 2 11 11 N 1.39502 * 123.51023 * 0.26649 * 10 5 3 12 12 C 1.34774 * 120.00048 * 232.69712 * 11 10 5 13 13 O 1.21283 * 120.00135 * 356.13564 * 12 11 10 14 14 C 1.50702 * 119.99789 * 176.13338 * 12 11 10 15 15 H 1.08998 * 109.47406 * 300.00140 * 14 12 11 16 16 C 1.52998 * 109.46720 * 60.00494 * 14 12 11 17 17 N 1.46900 * 109.46757 * 179.97438 * 14 12 11 18 18 C 1.46900 * 110.99745 * 150.99315 * 17 14 12 19 19 H 1.09004 * 109.47300 * 31.70625 * 18 17 14 20 20 C 1.53001 * 109.47117 * 151.70260 * 18 17 14 21 21 C 1.50699 * 109.47155 * 271.70021 * 18 17 14 22 22 H 1.08004 * 119.99967 * 0.02562 * 21 18 17 23 23 C 1.37879 * 119.99942 * 179.97438 * 21 18 17 24 24 N 1.31513 * 120.00246 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 119.99851 * 180.02562 * 23 21 18 26 26 H 1.48500 * 109.47307 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47210 * 120.00313 * 25 23 21 28 28 H 1.48502 * 109.47074 * 240.00349 * 25 23 21 29 29 H 1.08996 * 109.47046 * 300.00472 * 1 2 3 30 30 H 1.09008 * 109.47198 * 60.00054 * 1 2 3 31 31 H 1.08994 * 109.47643 * 179.97438 * 1 2 3 32 32 H 1.07999 * 124.39260 * 180.02562 * 7 6 5 33 33 H 1.09011 * 109.47234 * 84.50090 * 9 8 7 34 34 H 1.08999 * 109.46978 * 204.50059 * 9 8 7 35 35 H 1.08997 * 109.47418 * 324.49941 * 9 8 7 36 36 H 0.96998 * 119.99791 * 52.69561 * 11 10 5 37 37 H 1.09000 * 109.47031 * 183.99993 * 16 14 12 38 38 H 1.08998 * 109.47332 * 303.99588 * 16 14 12 39 39 H 1.08995 * 109.47572 * 64.00362 * 16 14 12 40 40 H 1.00899 * 111.00127 * 274.94652 * 17 14 12 41 41 H 1.08996 * 109.47247 * 64.93539 * 20 18 17 42 42 H 1.09001 * 109.47339 * 184.93231 * 20 18 17 43 43 H 1.09002 * 109.47342 * 304.93493 * 20 18 17 44 44 H 0.96996 * 120.00107 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2026 0.0000 4 8 1.3789 2.2234 -0.0005 5 6 3.4546 1.2766 0.0005 6 16 4.5484 -0.0960 0.1027 7 6 5.9144 0.9227 0.0279 8 6 5.5557 2.2059 -0.0667 9 6 6.5635 3.3233 -0.1494 10 6 4.1935 2.4336 -0.0848 11 7 3.6263 3.7045 -0.1793 12 6 3.9989 4.5368 -1.1717 13 8 4.8773 4.2084 -1.9408 14 6 3.3240 5.8754 -1.3258 15 1 2.2571 5.7273 -1.4929 16 6 3.5315 6.7004 -0.0541 17 7 3.9054 6.5878 -2.4714 18 6 2.9226 7.4926 -3.0825 19 1 2.2455 7.8660 -2.3142 20 6 3.6501 8.6690 -3.7366 21 6 2.1341 6.7459 -4.1274 22 1 2.3420 5.7034 -4.3181 23 6 1.1466 7.3934 -4.8392 24 7 0.8932 8.6628 -4.6066 25 14 0.1688 6.4677 -6.1339 26 1 0.6439 5.0624 -6.2022 27 1 -1.2716 6.4857 -5.7731 28 1 0.3563 7.1188 -7.4553 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 6.9367 0.5752 0.0537 33 1 6.8795 3.4517 -1.1848 34 1 6.1113 4.2477 0.2098 35 1 7.4287 3.0786 0.4668 36 1 2.9637 3.9893 0.4694 37 1 2.9843 7.6395 -0.1370 38 1 3.1642 6.1407 0.8060 39 1 4.5935 6.9089 0.0745 40 1 4.7386 7.0885 -2.2009 41 1 4.2608 8.3046 -4.5626 42 1 2.9189 9.3842 -4.1133 43 1 4.2888 9.1562 -2.9999 44 1 0.1987 9.1184 -5.1076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878821112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -99.921928 kcal Electronic energy + Delta-G solvation = -28041.440342 eV Core-core repulsion = 24085.231825 eV Total energy + Delta-G solvation = -3956.208517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08007 -41.21507 -39.22418 -37.69365 -37.50973 -35.31960 -34.77925 -32.57123 -32.04706 -29.28436 -28.68033 -28.13364 -27.27263 -26.07772 -24.62325 -22.34076 -22.27684 -21.67492 -20.04859 -19.69251 -18.57551 -18.32814 -17.97895 -17.65367 -17.33629 -16.75998 -16.68503 -16.02947 -15.72762 -15.46381 -15.15740 -14.92038 -14.83915 -14.50404 -14.41441 -14.32427 -13.87551 -13.55338 -13.33982 -13.31516 -13.04114 -12.95804 -12.93251 -12.89838 -12.64831 -12.33905 -12.29902 -12.09569 -12.06098 -11.94160 -11.82247 -11.77355 -11.22693 -11.06251 -10.74054 -10.52542 -9.81041 -9.15189 -8.99669 -8.11716 -6.21588 -0.86084 0.36934 0.80606 1.05700 1.34993 1.37131 1.49530 1.53758 1.69041 1.84220 2.13775 2.40925 3.14708 3.54366 3.69275 3.87692 3.91550 4.10072 4.14102 4.25965 4.28891 4.29645 4.45086 4.59513 4.67784 4.70636 4.74204 4.76087 4.84156 4.86620 4.96193 5.05706 5.13066 5.18204 5.25766 5.33076 5.42959 5.51554 5.69553 5.82492 6.21532 6.30987 6.47705 6.57787 6.90149 6.92065 7.17708 7.47364 8.92643 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003672 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.837653 B = 7623.713124 C = 9089.147747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.538 3.462 4 O -0.532 6.532 5 C -0.347 4.347 6 S 0.330 5.670 7 C -0.201 4.201 8 C -0.138 4.138 9 C -0.077 4.077 10 C 0.225 3.775 11 N -0.655 5.655 12 C 0.528 3.472 13 O -0.525 6.525 14 C 0.079 3.921 15 H 0.083 0.917 16 C -0.164 4.164 17 N -0.672 5.672 18 C 0.221 3.779 19 H -0.013 1.013 20 C -0.130 4.130 21 C -0.512 4.512 22 H 0.036 0.964 23 C 0.016 3.984 24 N -0.916 5.916 25 Si 0.949 3.051 26 H -0.282 1.282 27 H -0.277 1.277 28 H -0.275 1.275 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.139 0.861 32 H 0.212 0.788 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.421 0.579 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.335 0.665 41 H 0.028 0.972 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.661 -18.311 16.786 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.386 3.614 4 O -0.424 6.424 5 C -0.467 4.467 6 S 0.600 5.400 7 C -0.339 4.339 8 C -0.152 4.152 9 C -0.136 4.136 10 C 0.112 3.888 11 N -0.305 5.305 12 C 0.315 3.685 13 O -0.398 6.398 14 C -0.036 4.036 15 H 0.101 0.899 16 C -0.223 4.223 17 N -0.303 5.303 18 C 0.113 3.887 19 H 0.005 0.995 20 C -0.188 4.188 21 C -0.550 4.550 22 H 0.055 0.945 23 C -0.183 4.183 24 N -0.556 5.556 25 Si 0.776 3.224 26 H -0.207 1.207 27 H -0.202 1.202 28 H -0.200 1.200 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.229 0.771 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.154 0.846 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.595 -20.187 15.794 26.733 hybrid contribution -1.329 2.399 -0.248 2.753 sum 6.266 -17.788 15.546 24.441 Atomic orbital electron populations 1.23186 0.75022 1.05898 1.02263 1.86151 1.25046 1.31298 1.84526 1.18480 0.87708 0.82113 0.73087 1.90895 1.67030 1.36484 1.48018 1.22575 0.95534 1.00120 1.28509 1.82738 0.89860 1.02906 1.64509 1.25590 1.07407 0.96551 1.04396 1.18718 0.92611 0.97228 1.06615 1.20437 0.96482 0.94326 1.02361 1.17174 0.91670 0.84450 0.95487 1.43200 1.44314 1.12066 1.30955 1.21133 0.82135 0.86250 0.78939 1.90646 1.30666 1.76035 1.42482 1.21306 0.98673 0.91103 0.92473 0.89889 1.22369 1.03291 1.00593 0.96012 1.60087 1.08113 1.33583 1.28543 1.18975 0.88566 0.88857 0.92271 0.99509 1.21762 0.98956 0.99031 0.99093 1.21407 1.17032 0.96442 1.20163 0.94534 1.25564 0.97948 0.95771 0.99002 1.69978 1.32866 1.10138 1.42600 0.85644 0.78610 0.78550 0.79635 1.20689 1.20227 1.20030 0.91760 0.93205 0.84295 0.77094 0.91927 0.93383 0.89112 0.74004 0.91710 0.89832 0.90689 0.84645 0.95302 0.91747 0.94259 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.45 113.37 1.18 1.72 16 2 O -0.35 -8.37 10.23 -58.92 -0.60 -8.97 16 3 C 0.54 15.71 7.72 68.62 0.53 16.24 16 4 O -0.53 -18.45 15.04 19.15 0.29 -18.16 16 5 C -0.35 -9.21 6.28 22.90 0.14 -9.07 16 6 S 0.33 5.53 22.82 -56.49 -1.29 4.24 16 7 C -0.20 -3.34 10.66 66.76 0.71 -2.63 16 8 C -0.14 -3.32 5.40 -20.95 -0.11 -3.44 16 9 C -0.08 -1.82 8.33 71.24 0.59 -1.22 16 10 C 0.22 6.47 5.91 37.73 0.22 6.69 16 11 N -0.66 -20.42 4.10 -305.40 -1.25 -21.67 16 12 C 0.53 19.65 6.04 87.66 0.53 20.18 16 13 O -0.52 -22.41 13.36 -3.04 -0.04 -22.45 16 14 C 0.08 3.03 2.80 44.17 0.12 3.15 16 15 H 0.08 3.66 7.70 -2.39 -0.02 3.64 16 16 C -0.16 -4.65 9.12 71.98 0.66 -4.00 16 17 N -0.67 -29.94 5.56 -477.16 -2.65 -32.60 16 18 C 0.22 11.38 2.41 44.17 0.11 11.49 16 19 H -0.01 -0.69 7.44 -2.38 -0.02 -0.71 16 20 C -0.13 -6.34 8.90 71.98 0.64 -5.70 16 21 C -0.51 -30.02 8.69 25.60 0.22 -29.80 16 22 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 23 C 0.02 0.91 5.30 84.66 0.45 1.35 16 24 N -0.92 -53.30 11.37 21.45 0.24 -53.05 16 25 Si 0.95 46.37 29.54 68.60 2.03 48.40 16 26 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 28 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 29 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.05 1.04 8.13 -2.38 -0.02 1.02 16 31 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.06 1.78 7.19 -2.38 -0.02 1.76 16 34 H 0.05 1.23 6.87 -2.39 -0.02 1.21 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.42 11.86 7.30 -92.71 -0.68 11.18 16 37 H 0.06 1.94 7.82 -2.39 -0.02 1.92 16 38 H 0.08 1.90 7.37 -2.39 -0.02 1.89 16 39 H 0.07 1.89 8.05 -2.39 -0.02 1.88 16 40 H 0.33 13.38 7.86 -89.69 -0.70 12.67 16 41 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 3.44 6.22 -2.39 -0.01 3.42 16 43 H 0.04 1.61 8.03 -2.39 -0.02 1.59 16 44 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -74.94 378.05 2.39 -72.56 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.33 Total: 26.73 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 6.00 Total: 4.98 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -3.66 Total: -107.32 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.36 Total: -49.58 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.29 Total: 4.24 kcal Total: -74.94 2.39 -72.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878821112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.366 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds