Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99889 * 2 1 4 4 O 1.20819 * 120.00228 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99646 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46881 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47052 * 179.97438 * 6 5 3 8 8 C 1.36936 * 120.00058 * 270.00127 * 7 6 5 9 9 H 1.08004 * 120.00063 * 145.13454 * 8 7 6 10 10 C 1.38817 * 120.00042 * 325.13045 * 8 7 6 11 11 N 1.31618 * 119.99846 * 156.96228 * 10 8 7 12 12 Si 1.86796 * 120.00073 * 336.96881 * 10 8 7 13 13 H 1.48504 * 109.47293 * 95.33972 * 12 10 8 14 14 H 1.48494 * 109.47285 * 215.33755 * 12 10 8 15 15 H 1.48498 * 109.46886 * 335.34206 * 12 10 8 16 16 C 1.46496 * 120.00410 * 90.00196 * 7 6 5 17 17 C 1.50700 * 109.47519 * 264.54983 * 16 7 6 18 18 O 1.21290 * 119.99455 * 357.88175 * 17 16 7 19 19 N 1.34769 * 120.00824 * 177.88034 * 17 16 7 20 20 C 1.46502 * 120.00505 * 179.97438 * 19 17 16 21 21 C 1.50698 * 109.46779 * 180.02562 * 20 19 17 22 22 S 1.75886 * 125.20501 * 270.01750 * 21 20 19 23 23 C 1.75875 * 90.97278 * 179.97438 * 22 21 20 24 24 C 1.33391 * 109.59479 * 0.02562 * 23 22 21 25 25 C 1.33397 * 125.20392 * 89.72563 * 21 20 19 26 26 C 1.50693 * 122.53643 * 0.02562 * 25 21 20 27 27 H 1.08999 * 109.47666 * 59.99729 * 1 2 3 28 28 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46734 * 299.99688 * 1 2 3 30 30 H 1.08995 * 109.47413 * 60.00220 * 5 3 2 31 31 H 1.08993 * 109.47096 * 299.99872 * 5 3 2 32 32 H 1.09007 * 109.47046 * 60.00244 * 6 5 3 33 33 H 1.09002 * 109.47442 * 300.00148 * 6 5 3 34 34 H 0.96999 * 120.00030 * 179.97438 * 11 10 8 35 35 H 1.08995 * 109.47666 * 144.54586 * 16 7 6 36 36 H 1.09008 * 109.46577 * 24.54360 * 16 7 6 37 37 H 0.97008 * 119.99373 * 359.97438 * 19 17 16 38 38 H 1.08994 * 109.46531 * 299.99760 * 20 19 17 39 39 H 1.09001 * 109.47043 * 59.99986 * 20 19 17 40 40 H 1.07997 * 125.20821 * 180.02562 * 23 22 21 41 41 H 1.08003 * 122.53985 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47294 * 90.00443 * 26 25 21 43 43 H 1.08997 * 109.47251 * 210.00296 * 26 25 21 44 44 H 1.09004 * 109.47589 * 330.00336 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0011 8 6 6.1468 2.8549 1.1849 9 1 7.1081 2.3699 1.2690 10 6 5.6043 3.5151 2.2789 11 7 5.9872 3.1951 3.4968 12 14 4.3309 4.8575 2.0225 13 1 2.9692 4.2796 2.1533 14 1 4.5183 5.9190 3.0438 15 1 4.4929 5.4409 0.6666 16 6 6.1947 2.8566 -1.2697 17 6 6.6364 1.4633 -1.6368 18 8 6.4000 0.5361 -0.8914 19 7 7.2939 1.2474 -2.7932 20 6 7.7237 -0.1070 -3.1498 21 6 8.4313 -0.0756 -4.4799 22 16 7.6558 -0.2744 -6.0460 23 6 9.2002 -0.0918 -6.8675 24 6 10.1660 0.0984 -5.9672 25 6 9.7409 0.1129 -4.6500 26 6 10.6865 0.3210 -3.4953 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7805 0.8891 32 1 3.6108 3.2363 0.8890 33 1 3.6101 3.2360 -0.8910 34 1 5.6084 3.6567 4.2613 35 1 7.0689 3.4993 -1.1660 36 1 5.5453 3.2498 -2.0519 37 1 7.4826 1.9889 -3.3895 38 1 8.4030 -0.4854 -2.3861 39 1 6.8526 -0.7589 -3.2165 40 1 9.3446 -0.1281 -7.9371 41 1 11.2006 0.2350 -6.2453 42 1 11.0680 -0.6434 -3.1597 43 1 11.5179 0.9491 -3.8151 44 1 10.1577 0.8076 -2.6757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879474289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = -59.363148 kcal Electronic energy + Delta-G solvation = -27262.011416 eV Core-core repulsion = 23307.561660 eV Total energy + Delta-G solvation = -3954.449756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04123 -39.33621 -38.41783 -36.44426 -35.65407 -34.36125 -31.83660 -31.39669 -30.77417 -29.11807 -27.67149 -26.89456 -24.85571 -24.19111 -22.71785 -21.59566 -20.27384 -19.87585 -18.61047 -17.72092 -17.35637 -16.57891 -16.40818 -16.23078 -15.98146 -15.71946 -15.36445 -15.12991 -14.74147 -14.17566 -13.83749 -13.71518 -13.40520 -13.30563 -12.96982 -12.88408 -12.67214 -12.46125 -12.33246 -12.20291 -12.15129 -11.90707 -11.76259 -11.66238 -11.62016 -11.05472 -10.88412 -10.72206 -10.53558 -10.44080 -10.02566 -9.81178 -9.55498 -9.37403 -8.87045 -8.74080 -8.54595 -8.49612 -7.01987 -6.00921 -3.43194 0.70555 1.41602 1.79216 2.42141 2.66310 3.11904 3.31738 3.39887 3.51143 3.54035 3.68987 4.52060 4.54166 4.70010 4.86332 5.03858 5.18780 5.24283 5.26864 5.30311 5.32313 5.39050 5.48678 5.51579 5.54279 5.65405 5.76552 5.76929 5.83466 5.84866 5.88452 5.99384 6.22458 6.23704 6.26578 6.32833 6.60184 6.68620 6.71857 6.88746 7.83766 7.97945 8.17914 8.32505 8.84072 8.91992 9.66087 9.98044 11.13495 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.003170 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.059779 B = 8831.511362 C =10600.646510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.518 6.518 5 C -0.125 4.125 6 C 0.148 3.852 7 N -0.575 5.575 8 C -0.270 4.270 9 H 0.082 0.918 10 C 0.041 3.959 11 N -0.892 5.892 12 Si 0.872 3.128 13 H -0.280 1.280 14 H -0.301 1.301 15 H -0.268 1.268 16 C 0.131 3.869 17 C 0.479 3.521 18 O -0.514 6.514 19 N -0.741 5.741 20 C 0.194 3.806 21 C -0.198 4.198 22 S 0.106 5.894 23 C -0.212 4.212 24 C -0.133 4.133 25 C -0.086 4.086 26 C -0.100 4.100 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.163 0.837 41 H 0.139 0.861 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -6.541 -19.893 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.281 6.281 3 C 0.305 3.695 4 O -0.406 6.406 5 C -0.166 4.166 6 C 0.022 3.978 7 N -0.294 5.294 8 C -0.398 4.398 9 H 0.100 0.900 10 C -0.161 4.161 11 N -0.532 5.532 12 Si 0.702 3.298 13 H -0.208 1.208 14 H -0.229 1.229 15 H -0.193 1.193 16 C 0.000 4.000 17 C 0.263 3.737 18 O -0.387 6.387 19 N -0.398 5.398 20 C 0.069 3.931 21 C -0.316 4.316 22 S 0.371 5.629 23 C -0.348 4.348 24 C -0.164 4.164 25 C -0.100 4.100 26 C -0.159 4.159 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.229 0.771 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.181 0.819 41 H 0.157 0.843 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.342 -7.122 -19.589 20.887 hybrid contribution 0.633 1.088 -0.056 1.260 sum 1.975 -6.034 -19.645 20.646 Atomic orbital electron populations 1.23164 0.77668 1.03023 1.02173 1.86588 1.22543 1.34523 1.84408 1.24612 0.92929 0.80782 0.71182 1.90612 1.67583 1.36386 1.46027 1.22283 0.84145 1.03742 1.06388 1.21180 0.84290 0.91428 1.00936 1.43788 1.00308 1.83603 1.01662 1.18711 1.05104 1.29606 0.86334 0.90020 1.25331 0.97874 0.97811 0.95042 1.69891 1.44995 1.40676 0.97623 0.87033 0.81597 0.83372 0.77820 1.20768 1.22922 1.19265 1.20812 0.98200 0.91205 0.89773 1.22987 0.76807 0.94389 0.79471 1.90680 1.53817 1.44888 1.49294 1.46414 1.61098 1.08755 1.23533 1.19502 0.97903 0.86153 0.89572 1.24400 0.96837 1.12007 0.98335 1.84394 1.09892 1.71206 0.97406 1.25627 0.95967 1.09742 1.03419 1.20075 1.00586 1.03967 0.91724 1.18958 0.93642 1.01696 0.95682 1.20592 0.97659 1.02273 0.95390 0.92346 0.88637 0.92202 0.88353 0.86795 0.91543 0.93192 0.92575 0.89332 0.90996 0.77068 0.89962 0.91084 0.81939 0.84290 0.91032 0.91392 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.51 16 2 O -0.36 -6.28 10.57 -39.24 -0.41 -6.69 16 3 C 0.46 9.08 7.96 36.01 0.29 9.37 16 4 O -0.52 -11.21 15.73 -18.75 -0.29 -11.50 16 5 C -0.13 -2.58 5.63 -27.88 -0.16 -2.74 16 6 C 0.15 3.29 3.85 -4.04 -0.02 3.27 16 7 N -0.57 -13.18 1.68 -174.61 -0.29 -13.47 16 8 C -0.27 -7.36 9.77 -15.06 -0.15 -7.50 16 9 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 10 C 0.04 1.16 5.31 -17.43 -0.09 1.07 16 11 N -0.89 -27.04 13.97 55.49 0.78 -26.27 16 12 Si 0.87 22.30 24.97 -169.99 -4.24 18.05 16 13 H -0.28 -7.31 6.66 56.52 0.38 -6.93 16 14 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 16 C 0.13 2.34 6.20 -5.20 -0.03 2.31 16 17 C 0.48 8.34 7.81 -10.99 -0.09 8.26 16 18 O -0.51 -11.15 14.82 5.55 0.08 -11.07 16 19 N -0.74 -9.71 5.55 -61.47 -0.34 -10.05 16 20 C 0.19 2.42 5.53 -5.19 -0.03 2.39 16 21 C -0.20 -2.09 5.87 -36.00 -0.21 -2.30 16 22 S 0.11 0.99 23.33 -107.50 -2.51 -1.52 16 23 C -0.21 -1.71 11.23 29.04 0.33 -1.39 16 24 C -0.13 -1.13 9.98 -41.21 -0.41 -1.54 16 25 C -0.09 -0.84 5.80 -106.25 -0.62 -1.46 16 26 C -0.10 -0.89 9.60 36.00 0.35 -0.55 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.10 1.92 7.13 -51.93 -0.37 1.55 16 31 H 0.11 2.58 8.14 -51.93 -0.42 2.16 16 32 H 0.07 1.67 2.91 -51.92 -0.15 1.52 16 33 H 0.05 1.01 7.82 -51.93 -0.41 0.60 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.09 1.49 8.08 -51.93 -0.42 1.07 16 36 H 0.07 1.07 7.83 -51.92 -0.41 0.66 16 37 H 0.40 4.23 8.46 -40.82 -0.35 3.89 16 38 H 0.08 1.10 7.33 -51.93 -0.38 0.72 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 44 H 0.07 0.76 7.26 -51.93 -0.38 0.38 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -34.27 382.84 -7.49 -41.76 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.24 Total: 4.29 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 0.23 Total: 10.69 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.14 Total: -49.79 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.63 Total: -29.26 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.24 Total: 18.05 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.27 -7.49 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.604 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds