Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99889 * 2 1 4 4 O 1.20819 * 120.00228 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99646 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46881 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47052 * 179.97438 * 6 5 3 8 8 C 1.36936 * 120.00058 * 270.00127 * 7 6 5 9 9 H 1.08004 * 120.00063 * 145.13454 * 8 7 6 10 10 C 1.38817 * 120.00042 * 325.13045 * 8 7 6 11 11 N 1.31618 * 119.99846 * 156.96228 * 10 8 7 12 12 Si 1.86796 * 120.00073 * 336.96881 * 10 8 7 13 13 H 1.48504 * 109.47293 * 95.33972 * 12 10 8 14 14 H 1.48494 * 109.47285 * 215.33755 * 12 10 8 15 15 H 1.48498 * 109.46886 * 335.34206 * 12 10 8 16 16 C 1.46496 * 120.00410 * 90.00196 * 7 6 5 17 17 C 1.50700 * 109.47519 * 264.54983 * 16 7 6 18 18 O 1.21290 * 119.99455 * 357.88175 * 17 16 7 19 19 N 1.34769 * 120.00824 * 177.88034 * 17 16 7 20 20 C 1.46502 * 120.00505 * 179.97438 * 19 17 16 21 21 C 1.50698 * 109.46779 * 180.02562 * 20 19 17 22 22 S 1.75886 * 125.20501 * 270.01750 * 21 20 19 23 23 C 1.75875 * 90.97278 * 179.97438 * 22 21 20 24 24 C 1.33391 * 109.59479 * 0.02562 * 23 22 21 25 25 C 1.33397 * 125.20392 * 89.72563 * 21 20 19 26 26 C 1.50693 * 122.53643 * 0.02562 * 25 21 20 27 27 H 1.08999 * 109.47666 * 59.99729 * 1 2 3 28 28 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46734 * 299.99688 * 1 2 3 30 30 H 1.08995 * 109.47413 * 60.00220 * 5 3 2 31 31 H 1.08993 * 109.47096 * 299.99872 * 5 3 2 32 32 H 1.09007 * 109.47046 * 60.00244 * 6 5 3 33 33 H 1.09002 * 109.47442 * 300.00148 * 6 5 3 34 34 H 0.96999 * 120.00030 * 179.97438 * 11 10 8 35 35 H 1.08995 * 109.47666 * 144.54586 * 16 7 6 36 36 H 1.09008 * 109.46577 * 24.54360 * 16 7 6 37 37 H 0.97008 * 119.99373 * 359.97438 * 19 17 16 38 38 H 1.08994 * 109.46531 * 299.99760 * 20 19 17 39 39 H 1.09001 * 109.47043 * 59.99986 * 20 19 17 40 40 H 1.07997 * 125.20821 * 180.02562 * 23 22 21 41 41 H 1.08003 * 122.53985 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47294 * 90.00443 * 26 25 21 43 43 H 1.08997 * 109.47251 * 210.00296 * 26 25 21 44 44 H 1.09004 * 109.47589 * 330.00336 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0011 8 6 6.1468 2.8549 1.1849 9 1 7.1081 2.3699 1.2690 10 6 5.6043 3.5151 2.2789 11 7 5.9872 3.1951 3.4968 12 14 4.3309 4.8575 2.0225 13 1 2.9692 4.2796 2.1533 14 1 4.5183 5.9190 3.0438 15 1 4.4929 5.4409 0.6666 16 6 6.1947 2.8566 -1.2697 17 6 6.6364 1.4633 -1.6368 18 8 6.4000 0.5361 -0.8914 19 7 7.2939 1.2474 -2.7932 20 6 7.7237 -0.1070 -3.1498 21 6 8.4313 -0.0756 -4.4799 22 16 7.6558 -0.2744 -6.0460 23 6 9.2002 -0.0918 -6.8675 24 6 10.1660 0.0984 -5.9672 25 6 9.7409 0.1129 -4.6500 26 6 10.6865 0.3210 -3.4953 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7805 0.8891 32 1 3.6108 3.2363 0.8890 33 1 3.6101 3.2360 -0.8910 34 1 5.6084 3.6567 4.2613 35 1 7.0689 3.4993 -1.1660 36 1 5.5453 3.2498 -2.0519 37 1 7.4826 1.9889 -3.3895 38 1 8.4030 -0.4854 -2.3861 39 1 6.8526 -0.7589 -3.2165 40 1 9.3446 -0.1281 -7.9371 41 1 11.2006 0.2350 -6.2453 42 1 11.0680 -0.6434 -3.1597 43 1 11.5179 0.9491 -3.8151 44 1 10.1577 0.8076 -2.6757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -82.030098 kcal Electronic energy + Delta-G solvation = -27262.994328 eV Core-core repulsion = 23307.561660 eV Total energy + Delta-G solvation = -3955.432669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54975 -40.61433 -39.32992 -37.99597 -37.27518 -35.60637 -33.91961 -32.68301 -31.96942 -30.18814 -28.85884 -28.36410 -26.15009 -25.65064 -23.62259 -23.11620 -21.81489 -21.30545 -19.42036 -19.06602 -18.70666 -18.21313 -17.92724 -17.66610 -17.38160 -17.14105 -16.71312 -16.19145 -15.91634 -15.66284 -15.19261 -14.88466 -14.73886 -14.61581 -14.39087 -14.16872 -14.12055 -13.69428 -13.59166 -13.50732 -13.43978 -12.96304 -12.92155 -12.88158 -12.70623 -12.52655 -12.48755 -12.21894 -11.89905 -11.83223 -11.62037 -11.60765 -11.40471 -10.92434 -10.61749 -9.97375 -9.64751 -9.25273 -8.91189 -8.19879 -5.58035 -0.02250 0.69467 1.09693 1.09946 1.36622 1.42323 1.52430 1.71198 1.73910 1.91900 2.42138 2.47246 3.04949 3.33199 3.68927 3.90061 4.04387 4.06750 4.13361 4.20329 4.28001 4.28989 4.32123 4.50583 4.54867 4.59044 4.63266 4.64993 4.70276 4.75212 4.80573 4.81062 4.85574 5.05358 5.13982 5.15921 5.31563 5.51597 5.54007 5.61911 5.89251 6.16819 6.65458 6.69524 6.91989 7.48575 7.61059 7.94809 8.99238 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.003170 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.059779 B = 8831.511362 C =10600.646510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.368 6.368 3 C 0.469 3.531 4 O -0.538 6.538 5 C -0.115 4.115 6 C 0.146 3.854 7 N -0.587 5.587 8 C -0.246 4.246 9 H 0.042 0.958 10 C -0.013 4.013 11 N -0.943 5.943 12 Si 0.935 3.065 13 H -0.290 1.290 14 H -0.307 1.307 15 H -0.245 1.245 16 C 0.125 3.875 17 C 0.483 3.517 18 O -0.564 6.564 19 N -0.720 5.720 20 C 0.201 3.799 21 C -0.221 4.221 22 S 0.100 5.900 23 C -0.198 4.198 24 C -0.143 4.143 25 C -0.082 4.082 26 C -0.100 4.100 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.263 0.737 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.411 0.589 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.190 0.810 41 H 0.162 0.838 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -6.216 -23.507 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.284 6.284 3 C 0.313 3.687 4 O -0.428 6.428 5 C -0.155 4.155 6 C 0.020 3.980 7 N -0.306 5.306 8 C -0.376 4.376 9 H 0.059 0.941 10 C -0.210 4.210 11 N -0.587 5.587 12 Si 0.764 3.236 13 H -0.219 1.219 14 H -0.236 1.236 15 H -0.168 1.168 16 C -0.004 4.004 17 C 0.269 3.731 18 O -0.441 6.441 19 N -0.375 5.375 20 C 0.076 3.924 21 C -0.338 4.338 22 S 0.365 5.635 23 C -0.334 4.334 24 C -0.173 4.173 25 C -0.096 4.096 26 C -0.159 4.159 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.247 0.753 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.207 0.793 41 H 0.179 0.821 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.047 -6.794 -23.307 24.299 hybrid contribution 0.780 0.818 0.912 1.453 sum 1.828 -5.975 -22.394 23.250 Atomic orbital electron populations 1.23580 0.74861 1.05771 1.02557 1.86550 1.25207 1.32926 1.83707 1.24225 0.92451 0.81198 0.70804 1.90599 1.67903 1.37148 1.47160 1.21996 0.85335 1.02623 1.05531 1.21161 0.83782 0.92244 1.00811 1.43806 1.00735 1.84080 1.02014 1.18491 1.03606 1.27368 0.88106 0.94062 1.25875 1.00421 0.99966 0.94712 1.70014 1.47687 1.42433 0.98531 0.86014 0.78625 0.80462 0.78463 1.21889 1.23594 1.16838 1.21113 0.99105 0.91666 0.88558 1.22725 0.76786 0.93628 0.80000 1.90674 1.56151 1.46153 1.51140 1.46124 1.59246 1.09887 1.22261 1.19350 0.97367 0.85108 0.90621 1.24158 0.97312 1.14494 0.97867 1.84413 1.10903 1.71369 0.96779 1.25995 0.94788 1.07897 1.04686 1.20293 1.01894 1.04168 0.90947 1.19183 0.93342 1.00459 0.96635 1.20605 0.97928 1.02660 0.94724 0.91371 0.84789 0.92460 0.87254 0.89697 0.94265 0.90378 0.92816 0.88169 0.86821 0.75267 0.91378 0.92063 0.79267 0.82054 0.90657 0.89662 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.37 -12.19 10.57 -51.36 -0.54 -12.74 16 3 C 0.47 18.08 7.96 71.24 0.57 18.65 16 4 O -0.54 -22.63 15.73 21.98 0.35 -22.29 16 5 C -0.11 -4.71 5.63 29.85 0.17 -4.55 16 6 C 0.15 6.35 3.85 86.38 0.33 6.68 16 7 N -0.59 -26.65 1.68 -706.33 -1.19 -27.84 16 8 C -0.25 -13.78 9.77 84.03 0.82 -12.96 16 9 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 10 C -0.01 -0.76 5.31 84.86 0.45 -0.31 16 11 N -0.94 -59.55 13.97 21.65 0.30 -59.25 16 12 Si 0.93 47.00 24.97 68.60 1.71 48.71 16 13 H -0.29 -14.99 6.66 99.48 0.66 -14.32 16 14 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 15 H -0.25 -11.24 7.11 99.48 0.71 -10.54 16 16 C 0.12 4.24 6.20 85.63 0.53 4.77 16 17 C 0.48 16.61 7.81 87.66 0.68 17.29 16 18 O -0.56 -25.02 14.82 -3.06 -0.05 -25.07 16 19 N -0.72 -18.13 5.55 -466.80 -2.59 -20.72 16 20 C 0.20 4.97 5.53 85.63 0.47 5.45 16 21 C -0.22 -4.39 5.87 24.59 0.14 -4.24 16 22 S 0.10 1.67 23.33 -56.49 -1.32 0.36 16 23 C -0.20 -2.56 11.23 66.72 0.75 -1.81 16 24 C -0.14 -1.99 9.98 21.22 0.21 -1.78 16 25 C -0.08 -1.45 5.80 -20.92 -0.12 -1.57 16 26 C -0.10 -1.66 9.60 71.23 0.68 -0.98 16 27 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 30 H 0.11 4.22 7.13 -2.39 -0.02 4.21 16 31 H 0.08 3.99 8.14 -2.39 -0.02 3.98 16 32 H 0.04 1.95 2.91 -2.38 -0.01 1.94 16 33 H 0.08 2.95 7.82 -2.39 -0.02 2.93 16 34 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.10 3.18 8.08 -2.39 -0.02 3.16 16 36 H 0.11 2.94 7.83 -2.38 -0.02 2.92 16 37 H 0.41 7.95 8.46 -92.70 -0.78 7.17 16 38 H 0.07 1.88 7.33 -2.39 -0.02 1.86 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 44 H 0.06 1.13 7.26 -2.38 -0.02 1.11 16 Total: -1.00 -77.30 382.84 3.77 -73.53 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.20 Total: 18.86 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 6.89 Total: 26.44 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -3.47 Total: -107.80 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -0.24 Total: -60.09 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.71 Total: 48.71 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.32 Total: 0.36 kcal Total: -77.30 3.77 -73.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.505 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds