Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38136 * 119.96788 * 2 1 4 4 C 1.38851 * 119.93148 * 180.02562 * 3 2 1 5 5 N 1.39942 * 120.07066 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00233 * 146.83813 * 5 4 3 7 7 O 1.21588 * 119.99934 * 354.70477 * 6 5 4 8 8 N 1.34771 * 119.99926 * 174.70478 * 6 5 4 9 9 C 1.46506 * 120.00366 * 359.97438 * 8 6 5 10 10 C 1.46501 * 119.99915 * 179.97438 * 8 6 5 11 11 H 1.08997 * 109.47522 * 0.02562 * 10 8 6 12 12 C 1.53004 * 109.47022 * 120.00176 * 10 8 6 13 13 C 1.50694 * 109.47322 * 240.00036 * 10 8 6 14 14 H 1.08004 * 120.00104 * 0.02562 * 13 10 8 15 15 C 1.37885 * 120.00248 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99498 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99931 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47172 * 269.99659 * 17 15 13 19 19 H 1.48498 * 109.47128 * 29.99789 * 17 15 13 20 20 H 1.48504 * 109.46877 * 149.99509 * 17 15 13 21 21 C 1.38889 * 119.85850 * 0.24851 * 4 3 2 22 22 C 1.38098 * 119.92791 * 359.47517 * 21 4 3 23 23 S 1.76200 * 119.96158 * 180.27436 * 22 21 4 24 24 C 1.81399 * 104.44634 * 270.25295 * 23 22 21 25 25 O 1.42094 * 104.27816 * 26.32635 * 23 22 21 26 26 O 1.42102 * 104.27316 * 154.18272 * 23 22 21 27 27 C 1.38265 * 119.96351 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47114 * 89.99848 * 1 2 3 29 29 H 1.08994 * 109.47700 * 210.00212 * 1 2 3 30 30 H 1.09000 * 109.47083 * 330.00329 * 1 2 3 31 31 H 1.08006 * 120.03597 * 0.02562 * 3 2 1 32 32 H 0.97005 * 119.99597 * 326.83419 * 5 4 3 33 33 H 1.08997 * 109.46733 * 270.00255 * 9 8 6 34 34 H 1.08995 * 109.46655 * 29.99933 * 9 8 6 35 35 H 1.08995 * 109.46986 * 150.00138 * 9 8 6 36 36 H 1.09007 * 109.46936 * 299.99832 * 12 10 8 37 37 H 1.08990 * 109.47582 * 59.99863 * 12 10 8 38 38 H 1.09008 * 109.47096 * 180.02562 * 12 10 8 39 39 H 0.97003 * 119.99586 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.03515 * 179.73000 * 21 4 3 41 41 H 1.08997 * 109.47155 * 60.00761 * 24 23 22 42 42 H 1.09006 * 109.46805 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47421 * 299.99974 * 24 23 22 44 44 H 1.07991 * 119.93013 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1967 0.0000 4 6 3.5855 1.1958 -0.0005 5 7 4.2874 2.4064 -0.0011 6 6 5.4710 2.4994 0.6369 7 8 5.8832 1.5625 1.2930 8 7 6.1975 3.6310 0.5475 9 6 5.7011 4.7598 -0.2436 10 6 7.4838 3.7324 1.2414 11 1 7.6842 2.8021 1.7729 12 6 8.5952 3.9858 0.2209 13 6 7.4354 4.8730 2.2251 14 1 6.5363 5.4632 2.3238 15 6 8.5390 5.1632 2.9990 16 7 9.6337 4.4442 2.8791 17 14 8.4792 6.5775 4.2178 18 1 8.9285 7.8256 3.5502 19 1 7.0879 6.7510 4.7069 20 1 9.3738 6.2802 5.3653 21 6 4.2762 -0.0092 -0.0063 22 6 3.5805 -1.2021 -0.0005 23 16 4.4559 -2.7313 -0.0005 24 6 4.6801 -3.1244 -1.7571 25 8 5.7037 -2.4208 0.6042 26 8 3.5566 -3.6498 0.6052 27 6 2.1975 -1.1979 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6570 2.1321 0.0004 32 1 3.9221 3.1786 -0.4607 33 1 6.0554 4.6676 -1.2703 34 1 4.6112 4.7588 -0.2338 35 1 6.0675 5.6927 0.1848 36 1 8.6302 3.1607 -0.4906 37 1 8.3951 4.9158 -0.3109 38 1 9.5524 4.0607 0.7372 39 1 10.4099 4.6481 3.4239 40 1 5.3562 -0.0132 -0.0111 41 1 5.2502 -2.3292 -2.2375 42 1 5.2200 -4.0666 -1.8525 43 1 3.7054 -3.2135 -2.2368 44 1 1.6558 -2.1321 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880846897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -57.508617 kcal Electronic energy + Delta-G solvation = -27754.964046 eV Core-core repulsion = 23800.594709 eV Total energy + Delta-G solvation = -3954.369337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47029 -38.83297 -37.09477 -35.92973 -35.71838 -34.62032 -33.00077 -32.60477 -30.27306 -29.66468 -28.80392 -27.11436 -26.23069 -25.23396 -23.34032 -22.80019 -20.73305 -19.29141 -18.90625 -18.06277 -17.21940 -16.47966 -16.33859 -16.21969 -16.00183 -15.72837 -15.21477 -14.97121 -14.64434 -14.13781 -13.95722 -13.52824 -13.37588 -13.36036 -13.25360 -12.85279 -12.57710 -12.46047 -12.33400 -12.27153 -12.06208 -12.04256 -11.79988 -11.63276 -11.55224 -11.14506 -11.09195 -10.86229 -10.73148 -10.70706 -10.34169 -10.26279 -10.18317 -9.44309 -9.19159 -9.07907 -8.44485 -8.11660 -7.61679 -6.08378 -4.16615 -0.00511 0.79882 1.26142 2.80222 3.02722 3.25462 3.27912 3.33563 3.36605 3.78936 3.94074 4.06129 4.32227 4.45374 4.56916 4.58116 4.81812 4.92552 4.95906 5.11876 5.23020 5.33283 5.40002 5.41975 5.46420 5.54259 5.60150 5.76576 5.88731 6.01441 6.19403 6.24688 6.26510 6.44136 6.66748 6.77924 6.96220 7.03549 7.10243 7.42043 7.65247 7.77085 8.03619 8.18626 8.54956 8.83196 9.12020 9.49958 10.96996 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.003062 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.519127 B = 9142.794369 C =10073.891021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.106 4.106 4 C 0.171 3.829 5 N -0.696 5.696 6 C 0.691 3.309 7 O -0.570 6.570 8 N -0.601 5.601 9 C 0.084 3.916 10 C 0.271 3.729 11 H 0.067 0.933 12 C -0.146 4.146 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.275 1.275 20 H -0.285 1.285 21 C -0.032 4.032 22 C -0.634 4.634 23 S 2.498 3.502 24 C -0.652 4.652 25 O -0.923 6.923 26 O -0.941 6.941 27 C -0.056 4.056 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.404 0.596 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.012 0.988 37 H 0.029 0.971 38 H 0.095 0.905 39 H 0.264 0.736 40 H 0.157 0.843 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.239 -8.825 -13.919 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.073 3.927 5 N -0.346 5.346 6 C 0.393 3.607 7 O -0.446 6.446 8 N -0.335 5.335 9 C -0.060 4.060 10 C 0.171 3.829 11 H 0.085 0.915 12 C -0.205 4.205 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.523 5.523 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.200 1.200 20 H -0.210 1.210 21 C -0.054 4.054 22 C -0.721 4.721 23 S 2.677 3.323 24 C -0.801 4.801 25 O -0.920 6.920 26 O -0.939 6.939 27 C -0.076 4.076 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.241 0.759 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.031 0.969 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.175 0.825 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.334 -9.871 -12.626 22.180 hybrid contribution -0.512 2.032 -0.191 2.104 sum -15.846 -7.839 -12.817 21.836 Atomic orbital electron populations 1.20783 0.90466 1.03219 1.02429 1.19716 0.96181 0.92376 1.00557 1.21016 0.92135 0.98578 1.01029 1.17558 0.90475 0.85882 0.98783 1.43046 1.22108 1.11975 1.57483 1.16063 0.79860 0.84526 0.80247 1.90956 1.70650 1.38118 1.44874 1.47646 1.22746 1.11656 1.51471 1.21559 0.96974 0.92339 0.95168 1.18949 0.75405 0.99211 0.89361 0.91507 1.22101 1.03398 0.97086 0.97877 1.21305 0.99123 1.15243 1.21077 0.92297 1.24885 0.95253 0.96661 0.96914 1.69878 1.03202 1.39126 1.40121 0.86480 0.78006 0.82026 0.80771 1.20638 1.19991 1.21044 1.21060 1.01661 0.89532 0.93130 1.30396 1.05590 1.18796 1.17321 1.05259 0.74885 0.74490 0.77646 1.30242 1.11910 1.12279 1.25678 1.93665 1.42395 1.83355 1.72628 1.93565 1.65117 1.62035 1.73152 1.20656 0.91777 0.98536 0.96679 0.91017 0.91106 0.91356 0.85214 0.75866 0.93695 0.93650 0.89525 0.96931 0.95202 0.88670 0.92598 0.82518 0.84917 0.85148 0.85155 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.93 5.88 -104.65 -0.62 -1.54 16 3 C -0.11 -1.25 9.62 -39.39 -0.38 -1.63 16 4 C 0.17 2.56 6.28 -83.69 -0.53 2.03 16 5 N -0.70 -10.85 5.22 -14.22 -0.07 -10.93 16 6 C 0.69 14.47 8.02 -86.93 -0.70 13.77 16 7 O -0.57 -14.42 13.36 5.29 0.07 -14.35 16 8 N -0.60 -12.59 2.75 -181.01 -0.50 -13.09 16 9 C 0.08 1.32 9.24 59.85 0.55 1.87 16 10 C 0.27 6.88 2.64 -69.08 -0.18 6.70 16 11 H 0.07 1.99 6.90 -51.93 -0.36 1.64 16 12 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 13 C -0.53 -14.18 7.99 -34.44 -0.28 -14.45 16 14 H 0.06 1.55 7.33 -52.48 -0.38 1.16 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -25.04 11.32 55.43 0.63 -24.42 16 17 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.03 -0.52 8.08 -39.39 -0.32 -0.84 16 22 C -0.63 -8.34 5.65 -39.61 -0.22 -8.56 16 23 S 2.50 29.27 5.80 -107.50 -0.62 28.64 16 24 C -0.65 -4.21 10.80 101.05 1.09 -3.12 16 25 O -0.92 -15.47 17.13 -57.54 -0.99 -16.45 16 26 O -0.94 -12.90 17.12 -57.54 -0.99 -13.88 16 27 C -0.06 -0.64 9.12 -39.55 -0.36 -1.00 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.40 4.82 6.51 -40.82 -0.27 4.56 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.55 6.29 -51.93 -0.33 0.22 16 35 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 38 H 0.09 2.48 6.07 -51.92 -0.32 2.16 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.16 2.88 5.94 -52.49 -0.31 2.57 16 41 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.14 1.25 7.56 -52.49 -0.40 0.86 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -37.70 373.83 -9.24 -46.94 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.06 Total: 4.56 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.33 Total: -8.65 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.05 Total: -48.43 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.90 Total: -44.68 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 29.27 SS G_CDS: -0.62 Total: 28.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.70 -9.24 -46.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880846897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.567 kcal (2) G-P(sol) polarization free energy of solvation -37.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds