Wall clock time and date at job start Sat Apr 11 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38136 * 119.96788 * 2 1 4 4 C 1.38851 * 119.93148 * 180.02562 * 3 2 1 5 5 N 1.39942 * 120.07066 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00233 * 146.83813 * 5 4 3 7 7 O 1.21588 * 119.99934 * 354.70477 * 6 5 4 8 8 N 1.34771 * 119.99926 * 174.70478 * 6 5 4 9 9 C 1.46506 * 120.00366 * 359.97438 * 8 6 5 10 10 C 1.46501 * 119.99915 * 179.97438 * 8 6 5 11 11 H 1.08997 * 109.47522 * 0.02562 * 10 8 6 12 12 C 1.53004 * 109.47022 * 120.00176 * 10 8 6 13 13 C 1.50694 * 109.47322 * 240.00036 * 10 8 6 14 14 H 1.08004 * 120.00104 * 0.02562 * 13 10 8 15 15 C 1.37885 * 120.00248 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99498 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99931 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47172 * 269.99659 * 17 15 13 19 19 H 1.48498 * 109.47128 * 29.99789 * 17 15 13 20 20 H 1.48504 * 109.46877 * 149.99509 * 17 15 13 21 21 C 1.38889 * 119.85850 * 0.24851 * 4 3 2 22 22 C 1.38098 * 119.92791 * 359.47517 * 21 4 3 23 23 S 1.76200 * 119.96158 * 180.27436 * 22 21 4 24 24 C 1.81399 * 104.44634 * 270.25295 * 23 22 21 25 25 O 1.42094 * 104.27816 * 26.32635 * 23 22 21 26 26 O 1.42102 * 104.27316 * 154.18272 * 23 22 21 27 27 C 1.38265 * 119.96351 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47114 * 89.99848 * 1 2 3 29 29 H 1.08994 * 109.47700 * 210.00212 * 1 2 3 30 30 H 1.09000 * 109.47083 * 330.00329 * 1 2 3 31 31 H 1.08006 * 120.03597 * 0.02562 * 3 2 1 32 32 H 0.97005 * 119.99597 * 326.83419 * 5 4 3 33 33 H 1.08997 * 109.46733 * 270.00255 * 9 8 6 34 34 H 1.08995 * 109.46655 * 29.99933 * 9 8 6 35 35 H 1.08995 * 109.46986 * 150.00138 * 9 8 6 36 36 H 1.09007 * 109.46936 * 299.99832 * 12 10 8 37 37 H 1.08990 * 109.47582 * 59.99863 * 12 10 8 38 38 H 1.09008 * 109.47096 * 180.02562 * 12 10 8 39 39 H 0.97003 * 119.99586 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.03515 * 179.73000 * 21 4 3 41 41 H 1.08997 * 109.47155 * 60.00761 * 24 23 22 42 42 H 1.09006 * 109.46805 * 179.97438 * 24 23 22 43 43 H 1.08997 * 109.47421 * 299.99974 * 24 23 22 44 44 H 1.07991 * 119.93013 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1967 0.0000 4 6 3.5855 1.1958 -0.0005 5 7 4.2874 2.4064 -0.0011 6 6 5.4710 2.4994 0.6369 7 8 5.8832 1.5625 1.2930 8 7 6.1975 3.6310 0.5475 9 6 5.7011 4.7598 -0.2436 10 6 7.4838 3.7324 1.2414 11 1 7.6842 2.8021 1.7729 12 6 8.5952 3.9858 0.2209 13 6 7.4354 4.8730 2.2251 14 1 6.5363 5.4632 2.3238 15 6 8.5390 5.1632 2.9990 16 7 9.6337 4.4442 2.8791 17 14 8.4792 6.5775 4.2178 18 1 8.9285 7.8256 3.5502 19 1 7.0879 6.7510 4.7069 20 1 9.3738 6.2802 5.3653 21 6 4.2762 -0.0092 -0.0063 22 6 3.5805 -1.2021 -0.0005 23 16 4.4559 -2.7313 -0.0005 24 6 4.6801 -3.1244 -1.7571 25 8 5.7037 -2.4208 0.6042 26 8 3.5566 -3.6498 0.6052 27 6 2.1975 -1.1979 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6570 2.1321 0.0004 32 1 3.9221 3.1786 -0.4607 33 1 6.0554 4.6676 -1.2703 34 1 4.6112 4.7588 -0.2338 35 1 6.0675 5.6927 0.1848 36 1 8.6302 3.1607 -0.4906 37 1 8.3951 4.9158 -0.3109 38 1 9.5524 4.0607 0.7372 39 1 10.4099 4.6481 3.4239 40 1 5.3562 -0.0132 -0.0111 41 1 5.2502 -2.3292 -2.2375 42 1 5.2200 -4.0666 -1.8525 43 1 3.7054 -3.2135 -2.2368 44 1 1.6558 -2.1321 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880846897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:07 Heat of formation + Delta-G solvation = -85.956974 kcal Electronic energy + Delta-G solvation = -27756.197659 eV Core-core repulsion = 23800.594709 eV Total energy + Delta-G solvation = -3955.602951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82028 -40.06331 -38.15136 -37.38276 -36.98686 -36.08103 -34.76809 -33.63077 -31.78466 -30.39485 -30.17884 -27.91277 -27.65519 -27.30898 -24.40998 -24.13154 -22.22111 -20.75496 -19.98897 -19.31435 -18.65658 -18.19223 -17.54783 -17.23966 -17.05381 -16.99709 -16.61420 -16.46734 -16.01671 -15.65827 -15.05694 -14.67894 -14.44927 -14.31476 -14.05542 -14.01821 -13.95554 -13.56901 -13.36778 -13.29345 -13.19102 -13.15803 -13.06065 -13.00628 -12.88679 -12.72681 -12.65524 -12.62849 -12.21608 -12.13635 -12.04565 -11.78426 -11.45612 -11.20113 -11.06681 -10.53036 -10.04155 -9.52383 -9.06284 -8.15092 -6.31948 -0.86404 -0.19037 0.22919 1.40336 1.42724 1.51887 1.64266 1.89351 2.03895 2.40765 2.52076 2.98822 3.04299 3.13136 3.21716 3.76595 4.02990 4.07581 4.11305 4.15268 4.26874 4.35658 4.39394 4.50442 4.66637 4.71933 4.79173 4.88383 4.91538 4.92069 4.96036 5.03976 5.04519 5.11559 5.21694 5.37293 5.43643 5.47841 5.51131 5.64089 5.93012 5.94061 6.13708 6.20543 6.75479 7.01917 7.34883 7.56914 8.89474 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.003062 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.519127 B = 9142.794369 C =10073.891021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.097 4.097 4 C 0.141 3.859 5 N -0.674 5.674 6 C 0.686 3.314 7 O -0.626 6.626 8 N -0.609 5.609 9 C 0.079 3.921 10 C 0.276 3.724 11 H 0.007 0.993 12 C -0.130 4.130 13 C -0.539 4.539 14 H 0.063 0.937 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.288 1.288 21 C -0.066 4.066 22 C -0.637 4.637 23 S 2.493 3.507 24 C -0.616 4.616 25 O -0.991 6.991 26 O -0.968 6.968 27 C -0.056 4.056 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.423 0.577 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.018 0.982 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.265 0.735 40 H 0.118 0.882 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.884 -7.957 -16.137 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.083 4.083 3 C -0.117 4.117 4 C 0.045 3.955 5 N -0.326 5.326 6 C 0.388 3.612 7 O -0.506 6.506 8 N -0.343 5.343 9 C -0.064 4.064 10 C 0.174 3.826 11 H 0.025 0.975 12 C -0.189 4.189 13 C -0.578 4.578 14 H 0.081 0.919 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.196 1.196 20 H -0.214 1.214 21 C -0.088 4.088 22 C -0.724 4.724 23 S 2.677 3.323 24 C -0.771 4.771 25 O -0.988 6.988 26 O -0.965 6.965 27 C -0.075 4.075 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.180 0.820 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.185 0.815 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.056 -8.957 -14.852 25.767 hybrid contribution 0.504 1.617 0.388 1.738 sum -18.552 -7.340 -14.465 24.643 Atomic orbital electron populations 1.20892 0.87327 1.04267 1.04249 1.20226 0.98284 0.91502 0.98287 1.21346 0.90485 1.00570 0.99325 1.17836 0.91841 0.84975 1.00865 1.42606 1.20248 1.13136 1.56600 1.16249 0.81054 0.83707 0.80178 1.90927 1.72295 1.40042 1.47364 1.47476 1.21660 1.13304 1.51812 1.21844 0.99493 0.89740 0.95288 1.18494 0.78220 0.95998 0.89897 0.97498 1.21872 1.01429 0.98283 0.97331 1.21578 0.99263 1.15368 1.21592 0.91894 1.25759 0.94889 0.99202 0.98698 1.70035 1.03845 1.40715 1.41020 0.85420 0.77884 0.79249 0.78215 1.18954 1.19630 1.21353 1.20848 1.00190 0.91509 0.96255 1.30457 1.06607 1.18138 1.17207 1.05180 0.73184 0.73591 0.80363 1.29977 1.14744 1.13805 1.18550 1.93591 1.44801 1.84086 1.76344 1.93517 1.65151 1.61988 1.75874 1.21105 0.91001 1.00239 0.95181 0.88633 0.90188 0.90277 0.82022 0.73644 0.91326 0.89646 0.90515 0.96263 0.93116 0.91317 0.92624 0.86425 0.83711 0.82563 0.81523 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.23 0.71 -0.40 16 2 C -0.08 -1.49 5.88 -19.88 -0.12 -1.61 16 3 C -0.10 -2.03 9.62 22.39 0.22 -1.82 16 4 C 0.14 4.22 6.28 38.15 0.24 4.46 16 5 N -0.67 -20.93 5.22 -317.18 -1.66 -22.58 16 6 C 0.69 30.01 8.02 179.06 1.44 31.45 16 7 O -0.63 -34.44 13.36 -3.99 -0.05 -34.50 16 8 N -0.61 -26.10 2.75 -844.86 -2.33 -28.42 16 9 C 0.08 2.34 9.24 127.77 1.18 3.52 16 10 C 0.28 14.73 2.64 44.24 0.12 14.85 16 11 H 0.01 0.46 6.90 -2.39 -0.02 0.44 16 12 C -0.13 -6.38 8.97 71.98 0.65 -5.74 16 13 C -0.54 -29.63 7.99 25.60 0.20 -29.43 16 14 H 0.06 3.32 7.33 -2.91 -0.02 3.30 16 15 C 0.01 0.79 5.30 84.66 0.45 1.24 16 16 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 17 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 C -0.07 -2.25 8.08 22.39 0.18 -2.07 16 22 C -0.64 -17.02 5.65 22.25 0.13 -16.90 16 23 S 2.49 60.36 5.80 -56.49 -0.33 60.03 16 24 C -0.62 -6.37 10.80 113.37 1.22 -5.15 16 25 O -0.99 -36.69 17.13 -127.65 -2.19 -38.87 16 26 O -0.97 -26.68 17.12 -127.65 -2.19 -28.87 16 27 C -0.06 -1.16 9.12 22.29 0.20 -0.96 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 31 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.42 9.23 6.51 -92.70 -0.60 8.63 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.82 6.29 -2.39 -0.02 1.81 16 35 H 0.08 2.47 7.02 -2.39 -0.02 2.45 16 36 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.05 2.20 7.67 -2.39 -0.02 2.19 16 38 H 0.07 3.74 6.07 -2.38 -0.01 3.73 16 39 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.12 4.89 5.94 -2.91 -0.02 4.87 16 41 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.17 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.16 2.49 7.56 -2.92 -0.02 2.47 16 Total: -1.00 -91.19 373.83 0.78 -90.41 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.43 Total: 19.46 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 6.82 Total: -8.54 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.74 Total: -104.67 kcal Atomic # 8 Polarization: -97.82 SS G_CDS: -4.43 Total: -102.24 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 60.36 SS G_CDS: -0.33 Total: 60.03 kcal Total: -91.19 0.78 -90.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880846897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.454 kcal (2) G-P(sol) polarization free energy of solvation -91.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds