Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38125 * 126.30096 * 2 1 4 4 C 1.47288 * 126.42240 * 359.71172 * 3 2 1 5 5 O 1.21519 * 119.99966 * 0.02562 * 4 3 2 6 6 O 1.34757 * 119.99744 * 179.97438 * 4 3 2 7 7 C 1.45195 * 116.99661 * 180.02562 * 6 4 3 8 8 C 1.50708 * 109.47059 * 180.02562 * 7 6 4 9 9 C 1.39678 * 119.08755 * 269.73366 * 8 7 6 10 10 C 1.35661 * 121.71958 * 179.72161 * 9 8 7 11 11 C 1.41126 * 119.53889 * 0.51469 * 10 9 8 12 12 C 1.38239 * 134.81686 * 179.75892 * 11 10 9 13 13 N 1.33988 * 107.90563 * 180.02562 * 12 11 10 14 14 H 0.97005 * 125.02205 * 179.97438 * 13 12 11 15 15 N 1.39950 * 109.95734 * 0.02562 * 13 12 11 16 16 C 1.32056 * 108.96122 * 359.97438 * 15 13 12 17 17 C 1.35636 * 119.09138 * 89.99504 * 8 7 6 18 18 C 1.41343 * 107.14628 * 179.73461 * 3 2 1 19 19 N 1.30425 * 108.01629 * 0.02562 * 18 3 2 20 20 N 1.34231 * 126.29226 * 179.68772 * 2 1 3 21 21 C 1.46504 * 125.74268 * 0.23993 * 20 2 1 22 22 C 1.50699 * 109.46925 * 90.00181 * 21 20 2 23 23 H 1.08004 * 119.99967 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.00174 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99745 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00085 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47238 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46949 * 120.00184 * 26 24 22 29 29 H 1.48500 * 109.47245 * 240.00205 * 26 24 22 30 30 H 1.08997 * 109.47320 * 90.02631 * 1 2 3 31 31 H 1.09001 * 109.47680 * 210.02517 * 1 2 3 32 32 H 1.09005 * 109.47158 * 330.02739 * 1 2 3 33 33 H 1.09005 * 109.47159 * 299.99984 * 7 6 4 34 34 H 1.08997 * 109.47415 * 60.00561 * 7 6 4 35 35 H 1.07998 * 119.14482 * 359.97347 * 9 8 7 36 36 H 1.08007 * 120.22776 * 180.28504 * 10 9 8 37 37 H 1.08004 * 126.05058 * 0.02936 * 12 11 10 38 38 H 1.08005 * 120.20158 * 359.97438 * 17 8 7 39 39 H 1.08006 * 125.98937 * 179.97438 * 18 3 2 40 40 H 1.08994 * 109.46858 * 210.00004 * 21 20 2 41 41 H 1.08995 * 109.47357 * 330.00413 * 21 20 2 42 42 H 0.97003 * 119.99913 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 -0.0060 5 8 0.7019 2.7872 -0.0111 6 8 2.8016 3.5095 -0.0047 7 6 2.2984 4.8715 -0.0102 8 6 3.4571 5.8351 -0.0085 9 6 3.9710 6.2770 1.2128 10 6 5.0161 7.1396 1.2767 11 6 5.5987 7.6164 0.0830 12 6 6.6372 8.4777 -0.2180 13 7 6.7366 8.5528 -1.5521 14 1 7.3857 9.0901 -2.0326 15 7 5.7646 7.7425 -2.1498 16 6 5.0534 7.1566 -1.2038 17 6 3.9687 6.2535 -1.1930 18 6 3.6599 0.6494 0.0063 19 7 3.6339 -0.6546 0.0092 20 7 2.3015 -1.0819 0.0059 21 6 1.8496 -2.4755 0.0085 22 6 1.6995 -2.9575 -1.4114 23 1 1.9192 -2.2925 -2.2335 24 6 1.2828 -4.2479 -1.6610 25 7 1.0158 -5.0579 -0.6599 26 14 1.0975 -4.8456 -3.4211 27 1 1.4574 -3.7498 -4.3565 28 1 1.9977 -6.0048 -3.6475 29 1 -0.3094 -5.2575 -3.6584 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3634 0.8903 0.5134 33 1 1.6942 5.0320 -0.9032 34 1 1.6869 5.0366 0.8768 35 1 3.5274 5.9195 2.1303 36 1 5.3973 7.4620 2.2345 37 1 7.2587 8.9981 0.4958 38 1 3.5484 5.8980 -2.1222 39 1 4.5462 1.2667 0.0075 40 1 2.5824 -3.0940 0.5266 41 1 0.8892 -2.5451 0.5192 42 1 0.7223 -5.9656 -0.8355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892745369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = 55.933881 kcal Electronic energy + Delta-G solvation = -27324.056344 eV Core-core repulsion = 23271.455042 eV Total energy + Delta-G solvation = -4052.601302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.41306 -42.19240 -40.92443 -38.62215 -37.08208 -35.82743 -33.90533 -33.20895 -32.90080 -32.49744 -29.78251 -29.54605 -28.49000 -27.76330 -25.48927 -24.39346 -23.64244 -22.28875 -21.74969 -21.62399 -20.47645 -19.02380 -18.91476 -18.66932 -17.90555 -17.51376 -17.22759 -16.93670 -16.40094 -16.09995 -15.98888 -15.83485 -15.40551 -15.07404 -14.86507 -14.44110 -14.38116 -14.08489 -13.75137 -13.71991 -13.59935 -13.57390 -13.12951 -12.99248 -12.91911 -12.75135 -12.70494 -12.39607 -12.33142 -11.84345 -11.81283 -11.62827 -11.32150 -11.28496 -11.24016 -10.76033 -10.31664 -9.73424 -9.64519 -8.60156 -8.38293 -6.54042 -0.38528 0.45355 0.70419 1.20171 1.36603 1.38721 1.41973 1.49798 1.58408 1.86681 2.03227 2.26249 2.32890 2.91710 2.94732 3.27287 3.63649 3.68280 3.80150 3.89253 4.02118 4.05518 4.18668 4.29820 4.33959 4.43981 4.56311 4.57457 4.64026 4.66448 4.74847 4.79096 4.89665 5.00399 5.13192 5.16361 5.39444 5.45700 5.49465 5.55202 5.61889 5.68421 5.74131 5.93188 5.98341 6.29516 6.54345 6.58986 6.73733 6.92286 7.17002 8.69961 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.002007 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.661137 B =13948.453176 C =14429.580195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.161 3.839 3 C -0.321 4.321 4 C 0.559 3.441 5 O -0.541 6.541 6 O -0.347 6.347 7 C 0.106 3.894 8 C -0.043 4.043 9 C -0.161 4.161 10 C -0.027 4.027 11 C -0.235 4.235 12 C 0.119 3.881 13 N -0.414 5.414 14 H 0.460 0.540 15 N -0.354 5.354 16 C 0.078 3.922 17 C -0.104 4.104 18 C 0.097 3.903 19 N -0.336 5.336 20 N -0.333 5.333 21 C 0.265 3.735 22 C -0.555 4.555 23 H 0.051 0.949 24 C 0.025 3.975 25 N -0.915 5.915 26 Si 0.971 3.029 27 H -0.274 1.274 28 H -0.274 1.274 29 H -0.267 1.267 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.245 0.755 38 H 0.122 0.878 39 H 0.220 0.780 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 29.345 5.089 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.024 3.976 3 C -0.334 4.334 4 C 0.406 3.594 5 O -0.433 6.433 6 O -0.264 6.264 7 C 0.033 3.967 8 C -0.047 4.047 9 C -0.180 4.180 10 C -0.047 4.047 11 C -0.245 4.245 12 C -0.040 4.040 13 N -0.116 5.116 14 H 0.308 0.692 15 N -0.184 5.184 16 C -0.075 4.075 17 C -0.126 4.126 18 C -0.090 4.090 19 N -0.155 5.155 20 N -0.109 5.109 21 C 0.147 3.853 22 C -0.593 4.593 23 H 0.070 0.930 24 C -0.177 4.177 25 N -0.553 5.553 26 Si 0.795 3.205 27 H -0.199 1.199 28 H -0.199 1.199 29 H -0.192 1.192 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.180 0.820 37 H 0.261 0.739 38 H 0.140 0.860 39 H 0.236 0.764 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.699 28.147 3.816 30.015 hybrid contribution -0.454 0.099 -0.504 0.686 sum 9.245 28.246 3.312 29.905 Atomic orbital electron populations 1.20660 0.84998 1.04670 1.04486 1.21968 0.96134 0.86256 0.93203 1.19054 0.93752 0.90079 1.30539 1.19735 0.83347 0.84779 0.71505 1.90747 1.18454 1.84727 1.49352 1.86594 1.39300 1.16049 1.84442 1.22006 0.94257 0.76291 1.04189 1.19027 0.96221 0.95798 0.93704 1.20629 0.99414 1.01072 0.96905 1.20587 0.93347 0.93939 0.96780 1.20132 1.02773 1.07053 0.94550 1.23586 0.97066 0.96911 0.86438 1.46428 1.25881 1.33480 1.05776 0.69220 1.77635 1.06606 1.14575 1.19574 1.21056 0.96598 0.97467 0.92343 1.19834 0.95812 0.98547 0.98390 1.24494 0.97825 0.91251 0.95449 1.77165 0.98276 1.14105 1.25929 1.49184 1.03341 1.07917 1.50497 1.19469 0.95652 0.71893 0.98293 1.21408 1.47907 0.98506 0.91522 0.93049 1.25701 0.93848 0.95949 1.02178 1.69994 1.44771 1.07683 1.32836 0.85308 0.78474 0.78142 0.78576 1.19864 1.19942 1.19238 0.89285 0.90310 0.87574 0.90301 0.88822 0.84202 0.81956 0.73910 0.86032 0.76391 0.94747 0.92486 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.17 9.56 71.23 0.68 -2.48 16 2 C 0.16 6.60 7.01 42.16 0.30 6.89 16 3 C -0.32 -12.08 6.13 -20.16 -0.12 -12.20 16 4 C 0.56 18.94 7.95 70.20 0.56 19.50 16 5 O -0.54 -19.38 14.64 19.77 0.29 -19.09 16 6 O -0.35 -10.09 10.05 -56.68 -0.57 -10.66 16 7 C 0.11 2.46 5.54 71.24 0.39 2.85 16 8 C -0.04 -0.93 5.48 -20.12 -0.11 -1.04 16 9 C -0.16 -2.75 9.51 22.02 0.21 -2.54 16 10 C -0.03 -0.36 10.09 22.38 0.23 -0.13 16 11 C -0.24 -3.72 6.33 -20.23 -0.13 -3.84 16 12 C 0.12 0.88 12.07 84.36 1.02 1.90 16 13 N -0.41 -4.46 7.18 -56.35 -0.40 -4.87 16 14 H 0.46 1.23 8.96 -213.41 -1.91 -0.69 16 15 N -0.35 -7.87 12.70 -48.70 -0.62 -8.49 16 16 C 0.08 1.79 7.49 42.16 0.32 2.10 16 17 C -0.10 -2.49 9.65 22.38 0.22 -2.28 16 18 C 0.10 3.57 11.87 85.67 1.02 4.59 16 19 N -0.34 -14.98 12.50 -56.25 -0.70 -15.69 16 20 N -0.33 -15.46 3.56 -336.66 -1.20 -16.66 16 21 C 0.27 13.57 5.97 85.63 0.51 14.08 16 22 C -0.56 -30.49 9.39 25.60 0.24 -30.25 16 23 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 24 C 0.02 1.33 5.46 84.65 0.46 1.80 16 25 N -0.91 -50.77 13.29 21.45 0.28 -50.49 16 26 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.08 2.70 7.04 -2.39 -0.02 2.68 16 32 H 0.11 3.42 6.52 -2.38 -0.02 3.40 16 33 H 0.08 1.82 8.05 -2.38 -0.02 1.80 16 34 H 0.09 1.93 8.06 -2.39 -0.02 1.91 16 35 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.24 -1.10 8.06 -2.91 -0.02 -1.12 16 38 H 0.12 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.22 6.21 8.06 -2.91 -0.02 6.18 16 40 H 0.03 1.89 8.14 -2.39 -0.02 1.88 16 41 H 0.06 2.87 7.01 -2.39 -0.02 2.85 16 42 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -75.28 372.62 4.06 -71.22 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -0.83 Total: 11.02 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.78 Total: -1.06 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -2.64 Total: -96.19 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.28 Total: -29.75 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -75.28 4.06 -71.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892745369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.152 kcal (2) G-P(sol) polarization free energy of solvation -75.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds