Wall clock time and date at job start Sat Apr 11 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38131 * 126.29779 * 2 1 4 4 C 1.47284 * 126.42156 * 0.02562 * 3 2 1 5 5 O 1.21524 * 120.00088 * 359.97438 * 4 3 2 6 6 O 1.34759 * 119.99589 * 179.97438 * 4 3 2 7 7 C 1.45203 * 116.99689 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.46906 * 180.02562 * 7 6 4 9 9 C 1.38658 * 119.20937 * 0.02562 * 8 7 6 10 10 C 1.38205 * 119.41188 * 179.97438 * 9 8 7 11 11 C 1.39692 * 118.04146 * 0.02562 * 10 9 8 12 12 C 1.46381 * 134.32235 * 180.02562 * 11 10 9 13 13 C 1.34234 * 106.86513 * 179.97438 * 12 11 10 14 14 N 1.36910 * 109.91140 * 0.02562 * 13 12 11 15 15 H 0.97000 * 124.98338 * 179.97438 * 14 13 12 16 16 C 1.37418 * 110.02877 * 359.97438 * 14 13 12 17 17 N 1.31589 * 119.20697 * 180.02562 * 8 7 6 18 18 C 1.41340 * 107.14935 * 180.28536 * 3 2 1 19 19 N 1.30430 * 108.01071 * 359.55727 * 18 3 2 20 20 N 1.34224 * 126.29789 * 180.02562 * 2 1 3 21 21 C 1.46496 * 125.74388 * 359.94277 * 20 2 1 22 22 C 1.50705 * 109.47286 * 89.99866 * 21 20 2 23 23 H 1.07996 * 119.99867 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99990 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99809 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99969 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47516 * 90.00026 * 26 24 22 28 28 H 1.48504 * 109.46812 * 209.99641 * 26 24 22 29 29 H 1.48493 * 109.47343 * 329.99363 * 26 24 22 30 30 H 1.08996 * 109.47212 * 89.97611 * 1 2 3 31 31 H 1.09007 * 109.47219 * 209.97357 * 1 2 3 32 32 H 1.08994 * 109.47505 * 329.97236 * 1 2 3 33 33 H 1.09007 * 109.47064 * 60.00554 * 7 6 4 34 34 H 1.08996 * 109.47352 * 300.00277 * 7 6 4 35 35 H 1.07996 * 120.29666 * 359.97438 * 9 8 7 36 36 H 1.07996 * 120.97938 * 179.97438 * 10 9 8 37 37 H 1.08000 * 126.57197 * 0.22942 * 12 11 10 38 38 H 1.08001 * 125.04306 * 180.02562 * 13 12 11 39 39 H 1.07993 * 125.99718 * 179.74291 * 18 3 2 40 40 H 1.08998 * 109.47581 * 210.00239 * 21 20 2 41 41 H 1.09001 * 109.46921 * 330.00043 * 21 20 2 42 42 H 0.97006 * 120.00098 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5196 0.0005 5 8 0.7017 2.7872 0.0006 6 8 2.8014 3.5096 0.0010 7 6 2.2981 4.8716 0.0009 8 6 3.4568 5.8353 0.0008 9 6 4.7509 5.3374 0.0003 10 6 5.8166 6.2174 -0.0003 11 6 5.5380 7.5862 0.0002 12 6 6.3602 8.7973 -0.0007 13 6 5.5162 9.8410 -0.0001 14 7 4.2221 9.3942 0.0016 15 1 3.4370 9.9639 0.0026 16 6 4.1986 8.0202 0.0016 17 7 3.2161 7.1289 0.0013 18 6 3.6598 0.6497 -0.0067 19 7 3.6340 -0.6544 -0.0009 20 7 2.3015 -1.0818 -0.0005 21 6 1.8498 -2.4754 0.0001 22 6 1.6937 -2.9535 -1.4206 23 1 1.9098 -2.2861 -2.2417 24 6 1.2761 -4.2432 -1.6720 25 7 1.1394 -4.6602 -2.9117 26 14 0.9030 -5.3977 -0.2516 27 1 -0.5279 -5.2725 0.1255 28 1 1.1858 -6.7962 -0.6632 29 1 1.7545 -5.0424 0.9119 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3634 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 1.6899 5.0343 0.8908 34 1 1.6905 5.0345 -0.8892 35 1 4.9246 4.2715 0.0003 36 1 6.8348 5.8573 -0.0004 37 1 7.4393 8.8425 -0.0054 38 1 5.8138 10.8792 -0.0009 39 1 4.5460 1.2668 -0.0124 40 1 2.5847 -3.0954 0.5134 41 1 0.8916 -2.5465 0.5147 42 1 0.8452 -5.5675 -3.0886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893252921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:03 Heat of formation + Delta-G solvation = 63.337791 kcal Electronic energy + Delta-G solvation = -27387.284810 eV Core-core repulsion = 23335.004566 eV Total energy + Delta-G solvation = -4052.280244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78648 -40.99196 -39.76668 -38.25688 -36.10551 -33.96133 -33.24380 -32.26525 -31.50970 -30.95230 -30.08792 -28.23658 -27.10819 -26.45641 -23.58178 -23.42824 -22.52837 -21.69320 -21.04862 -20.31940 -18.99586 -18.69426 -17.40397 -17.25511 -16.84065 -16.39433 -16.23417 -15.76784 -15.31250 -15.12894 -14.77714 -14.70741 -14.24273 -13.72809 -13.64187 -13.46965 -13.41560 -13.25055 -12.85512 -12.62535 -12.36144 -12.22605 -12.18644 -12.17070 -12.12043 -11.71173 -11.26665 -10.86993 -10.79214 -10.57148 -10.48954 -10.36500 -9.92699 -9.81024 -9.64414 -8.87577 -8.73387 -8.64562 -8.37321 -8.14961 -6.35384 -4.40655 0.68498 1.15849 1.83214 2.23454 2.34249 2.62224 2.77299 3.08101 3.15092 3.16702 3.28100 3.57892 3.61732 4.13358 4.16350 4.38773 4.44750 4.66982 4.89211 4.95536 5.00227 5.05217 5.12842 5.23041 5.24240 5.34725 5.49328 5.49362 5.55130 5.61824 5.84518 5.95635 5.99265 6.15350 6.19339 6.22294 6.30031 6.41039 6.51589 6.64836 6.67248 6.96059 6.97488 7.14369 7.45064 7.72681 8.08187 8.16056 8.23875 8.67583 9.18010 10.76683 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031394 B = 0.001915 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.690267 B =14617.420951 C =15075.801488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.177 3.823 3 C -0.315 4.315 4 C 0.556 3.444 5 O -0.525 6.525 6 O -0.352 6.352 7 C 0.126 3.874 8 C 0.168 3.832 9 C -0.174 4.174 10 C -0.028 4.028 11 C -0.156 4.156 12 C -0.195 4.195 13 C 0.059 3.941 14 N -0.584 5.584 15 H 0.419 0.581 16 C 0.289 3.711 17 N -0.497 5.497 18 C 0.085 3.915 19 N -0.293 5.293 20 N -0.310 5.310 21 C 0.224 3.776 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.082 3.918 25 N -0.881 5.881 26 Si 0.872 3.128 27 H -0.270 1.270 28 H -0.278 1.278 29 H -0.263 1.263 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.178 0.822 39 H 0.187 0.813 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 25.778 7.976 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.039 3.961 3 C -0.328 4.328 4 C 0.403 3.597 5 O -0.415 6.415 6 O -0.269 6.269 7 C 0.051 3.949 8 C 0.022 3.978 9 C -0.196 4.196 10 C -0.055 4.055 11 C -0.163 4.163 12 C -0.221 4.221 13 C -0.067 4.067 14 N -0.191 5.191 15 H 0.257 0.743 16 C 0.056 3.944 17 N -0.212 5.212 18 C -0.103 4.103 19 N -0.112 5.112 20 N -0.086 5.086 21 C 0.105 3.895 22 C -0.585 4.585 23 H 0.101 0.899 24 C -0.123 4.123 25 N -0.518 5.518 26 Si 0.698 3.302 27 H -0.195 1.195 28 H -0.203 1.203 29 H -0.188 1.188 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.169 0.831 38 H 0.195 0.805 39 H 0.204 0.796 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.452 24.892 7.857 26.888 hybrid contribution -0.216 0.175 0.439 0.520 sum 6.236 25.066 8.296 27.130 Atomic orbital electron populations 1.20654 0.86437 1.03956 1.04543 1.21443 0.94983 0.86316 0.93333 1.18755 0.93773 0.89102 1.31154 1.19958 0.83259 0.84660 0.71838 1.90782 1.17860 1.84395 1.48472 1.86429 1.40000 1.15066 1.85417 1.21199 0.92399 0.76995 1.04326 1.20277 0.93711 0.88310 0.95465 1.21753 0.92018 1.01990 1.03793 1.21021 0.99838 0.90403 0.94229 1.19939 0.93838 0.94442 1.08114 1.21673 0.99058 0.89774 1.11597 1.21871 0.81750 0.99618 1.03418 1.41556 1.08421 1.03657 1.65452 0.74335 1.18127 0.90024 0.84916 1.01363 1.65780 1.35860 1.01359 1.18232 1.23941 0.96670 0.92038 0.97664 1.77229 0.97692 1.12474 1.23842 1.48951 1.02902 1.07535 1.49171 1.20206 0.95847 0.73047 1.00364 1.21075 1.48242 0.99264 0.89918 0.89949 1.24788 0.94261 0.97391 0.95887 1.69861 1.44948 1.18261 1.18686 0.86907 0.79510 0.81092 0.82681 1.19499 1.20330 1.18752 0.89093 0.90693 0.88653 0.88944 0.88887 0.83046 0.84393 0.83137 0.80511 0.79566 0.92493 0.93297 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.57 36.00 0.34 -1.28 16 2 C 0.18 3.40 7.01 -81.59 -0.57 2.83 16 3 C -0.31 -5.60 6.13 -105.08 -0.64 -6.24 16 4 C 0.56 9.07 7.95 34.41 0.27 9.35 16 5 O -0.53 -9.29 14.63 -19.28 -0.28 -9.58 16 6 O -0.35 -4.83 8.47 -40.65 -0.34 -5.18 16 7 C 0.13 1.55 6.00 36.01 0.22 1.76 16 8 C 0.17 2.05 6.78 -82.54 -0.56 1.49 16 9 C -0.17 -1.90 9.39 -39.44 -0.37 -2.27 16 10 C -0.03 -0.28 10.22 -39.05 -0.40 -0.68 16 11 C -0.16 -1.61 6.39 -105.11 -0.67 -2.29 16 12 C -0.20 -1.44 11.09 -37.72 -0.42 -1.86 16 13 C 0.06 0.34 11.82 -16.70 -0.20 0.14 16 14 N -0.58 -4.40 6.05 -12.14 -0.07 -4.47 16 15 H 0.42 2.12 8.96 -40.82 -0.37 1.75 16 16 C 0.29 3.23 8.43 -155.69 -1.31 1.91 16 17 N -0.50 -6.25 10.29 -8.50 -0.09 -6.34 16 18 C 0.08 1.45 11.87 -16.97 -0.20 1.25 16 19 N -0.29 -6.08 12.50 30.87 0.39 -5.69 16 20 N -0.31 -6.65 3.56 -57.76 -0.21 -6.85 16 21 C 0.22 5.06 5.03 -5.19 -0.03 5.04 16 22 C -0.55 -14.67 9.94 -34.44 -0.34 -15.02 16 23 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 24 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 25 N -0.88 -25.46 13.96 55.43 0.77 -24.68 16 26 Si 0.87 19.39 27.47 -169.99 -4.67 14.72 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.07 1.16 7.05 -51.93 -0.37 0.79 16 32 H 0.09 1.48 6.50 -51.93 -0.34 1.14 16 33 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.15 1.51 6.94 -52.49 -0.36 1.14 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 39 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.06 1.29 7.20 -51.93 -0.37 0.92 16 41 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -33.39 366.87 -8.64 -42.03 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.69 Total: 4.26 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -4.98 Total: -3.75 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.79 Total: -48.04 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.63 Total: -14.75 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.67 Total: 14.72 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.39 -8.64 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893252921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.369 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds