Wall clock time and date at job start Sat Apr 11 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38131 * 126.29779 * 2 1 4 4 C 1.47284 * 126.42156 * 0.02562 * 3 2 1 5 5 O 1.21524 * 120.00088 * 359.97438 * 4 3 2 6 6 O 1.34759 * 119.99589 * 179.97438 * 4 3 2 7 7 C 1.45203 * 116.99689 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.46906 * 180.02562 * 7 6 4 9 9 C 1.38658 * 119.20937 * 0.02562 * 8 7 6 10 10 C 1.38205 * 119.41188 * 179.97438 * 9 8 7 11 11 C 1.39692 * 118.04146 * 0.02562 * 10 9 8 12 12 C 1.46381 * 134.32235 * 180.02562 * 11 10 9 13 13 C 1.34234 * 106.86513 * 179.97438 * 12 11 10 14 14 N 1.36910 * 109.91140 * 0.02562 * 13 12 11 15 15 H 0.97000 * 124.98338 * 179.97438 * 14 13 12 16 16 C 1.37418 * 110.02877 * 359.97438 * 14 13 12 17 17 N 1.31589 * 119.20697 * 180.02562 * 8 7 6 18 18 C 1.41340 * 107.14935 * 180.28536 * 3 2 1 19 19 N 1.30430 * 108.01071 * 359.55727 * 18 3 2 20 20 N 1.34224 * 126.29789 * 180.02562 * 2 1 3 21 21 C 1.46496 * 125.74388 * 359.94277 * 20 2 1 22 22 C 1.50705 * 109.47286 * 89.99866 * 21 20 2 23 23 H 1.07996 * 119.99867 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99990 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99809 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99969 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47516 * 90.00026 * 26 24 22 28 28 H 1.48504 * 109.46812 * 209.99641 * 26 24 22 29 29 H 1.48493 * 109.47343 * 329.99363 * 26 24 22 30 30 H 1.08996 * 109.47212 * 89.97611 * 1 2 3 31 31 H 1.09007 * 109.47219 * 209.97357 * 1 2 3 32 32 H 1.08994 * 109.47505 * 329.97236 * 1 2 3 33 33 H 1.09007 * 109.47064 * 60.00554 * 7 6 4 34 34 H 1.08996 * 109.47352 * 300.00277 * 7 6 4 35 35 H 1.07996 * 120.29666 * 359.97438 * 9 8 7 36 36 H 1.07996 * 120.97938 * 179.97438 * 10 9 8 37 37 H 1.08000 * 126.57197 * 0.22942 * 12 11 10 38 38 H 1.08001 * 125.04306 * 180.02562 * 13 12 11 39 39 H 1.07993 * 125.99718 * 179.74291 * 18 3 2 40 40 H 1.08998 * 109.47581 * 210.00239 * 21 20 2 41 41 H 1.09001 * 109.46921 * 330.00043 * 21 20 2 42 42 H 0.97006 * 120.00098 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5196 0.0005 5 8 0.7017 2.7872 0.0006 6 8 2.8014 3.5096 0.0010 7 6 2.2981 4.8716 0.0009 8 6 3.4568 5.8353 0.0008 9 6 4.7509 5.3374 0.0003 10 6 5.8166 6.2174 -0.0003 11 6 5.5380 7.5862 0.0002 12 6 6.3602 8.7973 -0.0007 13 6 5.5162 9.8410 -0.0001 14 7 4.2221 9.3942 0.0016 15 1 3.4370 9.9639 0.0026 16 6 4.1986 8.0202 0.0016 17 7 3.2161 7.1289 0.0013 18 6 3.6598 0.6497 -0.0067 19 7 3.6340 -0.6544 -0.0009 20 7 2.3015 -1.0818 -0.0005 21 6 1.8498 -2.4754 0.0001 22 6 1.6937 -2.9535 -1.4206 23 1 1.9098 -2.2861 -2.2417 24 6 1.2761 -4.2432 -1.6720 25 7 1.1394 -4.6602 -2.9117 26 14 0.9030 -5.3977 -0.2516 27 1 -0.5279 -5.2725 0.1255 28 1 1.1858 -6.7962 -0.6632 29 1 1.7545 -5.0424 0.9119 30 1 -0.3633 0.0004 -1.0276 31 1 -0.3634 -0.8903 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 1.6899 5.0343 0.8908 34 1 1.6905 5.0345 -0.8892 35 1 4.9246 4.2715 0.0003 36 1 6.8348 5.8573 -0.0004 37 1 7.4393 8.8425 -0.0054 38 1 5.8138 10.8792 -0.0009 39 1 4.5460 1.2668 -0.0124 40 1 2.5847 -3.0954 0.5134 41 1 0.8916 -2.5465 0.5147 42 1 0.8452 -5.5675 -3.0886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893252921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:03 Heat of formation + Delta-G solvation = 43.035320 kcal Electronic energy + Delta-G solvation = -27388.165191 eV Core-core repulsion = 23335.004566 eV Total energy + Delta-G solvation = -4053.160625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.49993 -42.40178 -41.00716 -39.05737 -37.31306 -35.77990 -34.04176 -33.95949 -32.97991 -31.89093 -30.72079 -29.85695 -28.49881 -27.44135 -25.12329 -24.33774 -23.90210 -22.63714 -21.68830 -21.59354 -20.48550 -19.43180 -19.27977 -18.70995 -17.73454 -17.54764 -17.17719 -16.99942 -16.49239 -16.23528 -16.07631 -15.78033 -15.62049 -15.17152 -14.60567 -14.53577 -14.37031 -14.18493 -14.10209 -14.01095 -13.82765 -13.71702 -13.22742 -13.16205 -13.10028 -13.01153 -12.86345 -12.55025 -12.15693 -11.85143 -11.83952 -11.80002 -11.37940 -11.32997 -10.90328 -10.45379 -10.31670 -9.65986 -9.39279 -8.96598 -8.41655 -6.54061 -0.03352 0.37787 0.40748 1.16121 1.24058 1.36172 1.38525 1.47735 1.68744 1.79568 2.06139 2.23149 2.26134 2.80529 2.90780 3.31570 3.64541 3.71281 3.72569 3.89855 3.95251 4.01184 4.11393 4.18829 4.25450 4.39624 4.41117 4.54148 4.58360 4.68745 4.71617 4.79935 4.84450 4.92798 5.00745 5.07537 5.18011 5.22161 5.43685 5.54393 5.58034 5.60552 5.78832 5.99423 6.17849 6.40906 6.49207 6.68814 6.85182 6.98177 7.09797 8.74616 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031394 B = 0.001915 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.690267 B =14617.420951 C =15075.801488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.164 3.836 3 C -0.319 4.319 4 C 0.563 3.437 5 O -0.540 6.540 6 O -0.341 6.341 7 C 0.130 3.870 8 C 0.146 3.854 9 C -0.185 4.185 10 C -0.032 4.032 11 C -0.171 4.171 12 C -0.215 4.215 13 C 0.080 3.920 14 N -0.579 5.579 15 H 0.429 0.571 16 C 0.258 3.742 17 N -0.518 5.518 18 C 0.101 3.899 19 N -0.332 5.332 20 N -0.333 5.333 21 C 0.232 3.768 22 C -0.554 4.554 23 H 0.027 0.973 24 C 0.023 3.977 25 N -0.934 5.934 26 Si 0.949 3.051 27 H -0.252 1.252 28 H -0.279 1.279 29 H -0.241 1.241 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.224 0.776 39 H 0.228 0.772 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 27.666 9.983 30.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.028 3.972 3 C -0.332 4.332 4 C 0.410 3.590 5 O -0.431 6.431 6 O -0.257 6.257 7 C 0.056 3.944 8 C 0.001 3.999 9 C -0.206 4.206 10 C -0.058 4.058 11 C -0.178 4.178 12 C -0.240 4.240 13 C -0.046 4.046 14 N -0.187 5.187 15 H 0.269 0.731 16 C 0.024 3.976 17 N -0.233 5.233 18 C -0.086 4.086 19 N -0.150 5.150 20 N -0.109 5.109 21 C 0.112 3.888 22 C -0.592 4.592 23 H 0.046 0.954 24 C -0.177 4.177 25 N -0.572 5.572 26 Si 0.770 3.230 27 H -0.176 1.176 28 H -0.205 1.205 29 H -0.164 1.164 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.175 0.825 36 H 0.181 0.819 37 H 0.191 0.809 38 H 0.241 0.759 39 H 0.244 0.756 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.445 26.831 9.873 29.544 hybrid contribution -0.421 -0.111 -0.279 0.517 sum 7.024 26.720 9.593 29.246 Atomic orbital electron populations 1.20707 0.85006 1.05145 1.04391 1.21957 0.96128 0.86311 0.92850 1.18971 0.93997 0.89664 1.30558 1.19710 0.83191 0.84640 0.71479 1.90774 1.18552 1.84651 1.49128 1.86402 1.39064 1.15440 1.84781 1.21226 0.92850 0.76069 1.04281 1.20217 0.93970 0.88378 0.97355 1.21853 0.91930 1.02499 1.04321 1.21341 1.00728 0.90342 0.93367 1.20411 0.94299 0.95598 1.07521 1.22036 1.00362 0.88847 1.12763 1.22681 0.80413 1.01390 1.00073 1.41747 1.09793 1.02533 1.64672 0.73128 1.18512 0.90347 0.86250 1.02516 1.65691 1.36955 1.01759 1.18900 1.24596 0.97810 0.91231 0.95001 1.77176 0.97798 1.14235 1.25822 1.48822 1.03548 1.07412 1.51131 1.19979 0.97113 0.74124 0.97538 1.21175 1.48211 0.98892 0.90920 0.95449 1.25814 0.93641 0.99222 0.99021 1.70026 1.46531 1.19064 1.21623 0.85707 0.80495 0.77767 0.79072 1.17570 1.20469 1.16422 0.89790 0.89432 0.87496 0.88778 0.89237 0.82509 0.81883 0.80901 0.75935 0.75611 0.92252 0.90658 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 9.57 71.23 0.68 -2.43 16 2 C 0.16 6.29 7.01 42.16 0.30 6.59 16 3 C -0.32 -11.18 6.13 -20.16 -0.12 -11.30 16 4 C 0.56 18.04 7.95 70.20 0.56 18.60 16 5 O -0.54 -18.89 14.63 19.76 0.29 -18.60 16 6 O -0.34 -9.13 8.47 -56.70 -0.48 -9.61 16 7 C 0.13 3.22 6.00 71.24 0.43 3.65 16 8 C 0.15 3.57 6.78 42.70 0.29 3.86 16 9 C -0.18 -3.92 9.39 22.36 0.21 -3.71 16 10 C -0.03 -0.58 10.22 22.61 0.23 -0.35 16 11 C -0.17 -3.30 6.39 -20.18 -0.13 -3.42 16 12 C -0.22 -2.60 11.09 23.48 0.26 -2.34 16 13 C 0.08 0.64 11.82 82.99 0.98 1.62 16 14 N -0.58 -7.60 6.05 -192.33 -1.16 -8.77 16 15 H 0.43 3.56 8.96 -92.71 -0.83 2.73 16 16 C 0.26 5.55 8.43 133.93 1.13 6.67 16 17 N -0.52 -13.06 10.29 -180.82 -1.86 -14.92 16 18 C 0.10 3.37 11.87 85.66 1.02 4.39 16 19 N -0.33 -13.70 12.50 -56.25 -0.70 -14.41 16 20 N -0.33 -14.33 3.56 -336.66 -1.20 -15.53 16 21 C 0.23 10.41 5.03 85.64 0.43 10.84 16 22 C -0.55 -30.62 9.94 25.60 0.25 -30.36 16 23 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 24 C 0.02 1.27 5.47 84.65 0.46 1.74 16 25 N -0.93 -55.74 13.96 21.45 0.30 -55.44 16 26 Si 0.95 39.45 27.47 68.60 1.88 41.34 16 27 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 28 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.24 -9.11 6.54 99.48 0.65 -8.46 16 30 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.09 2.61 7.05 -2.38 -0.02 2.59 16 32 H 0.11 3.24 6.50 -2.39 -0.02 3.22 16 33 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.16 2.98 6.94 -2.91 -0.02 2.96 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.22 -0.42 8.06 -2.91 -0.02 -0.45 16 39 H 0.23 5.35 8.06 -2.91 -0.02 5.32 16 40 H 0.06 2.63 7.20 -2.39 -0.02 2.61 16 41 H 0.08 2.97 6.44 -2.39 -0.02 2.95 16 42 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -76.09 366.87 4.25 -71.84 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.20 Total: 20.04 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.98 Total: 4.04 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -4.63 Total: -109.05 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.19 Total: -28.21 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.88 Total: 41.34 kcal Total: -76.09 4.25 -71.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893252921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.877 kcal (2) G-P(sol) polarization free energy of solvation -76.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds