Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38048 * 126.29084 * 2 1 4 4 C 1.47430 * 126.41483 * 0.03026 * 3 2 1 5 5 O 1.21603 * 120.00081 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99963 * 180.02562 * 4 3 2 7 7 N 1.40105 * 119.99775 * 180.27838 * 6 4 3 8 8 C 1.46728 * 125.62392 * 254.43723 * 7 6 4 9 9 C 1.50825 * 106.25295 * 179.91331 * 8 7 6 10 10 C 1.37576 * 133.23938 * 180.02562 * 9 8 7 11 11 C 1.38469 * 119.95794 * 180.32112 * 10 9 8 12 12 C 1.38385 * 120.18568 * 359.97438 * 11 10 9 13 13 C 1.37938 * 120.32451 * 359.97438 * 12 11 10 14 14 C 1.39624 * 119.82395 * 0.02562 * 13 12 11 15 15 C 1.34414 * 125.62254 * 74.74899 * 7 6 4 16 16 O 1.21551 * 124.86266 * 359.97438 * 15 7 6 17 17 C 1.41282 * 107.17080 * 180.29865 * 3 2 1 18 18 N 1.30458 * 108.02280 * 359.55392 * 17 3 2 19 19 N 1.34251 * 126.29328 * 180.02562 * 2 1 3 20 20 C 1.46507 * 125.75074 * 359.96260 * 19 2 1 21 21 C 1.50696 * 109.47102 * 90.00285 * 20 19 2 22 22 H 1.08001 * 119.99825 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99968 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99935 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00322 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47023 * 89.99849 * 25 23 21 27 27 H 1.48496 * 109.47317 * 210.00095 * 25 23 21 28 28 H 1.48505 * 109.46753 * 330.00254 * 25 23 21 29 29 H 1.09003 * 109.47154 * 89.97526 * 1 2 3 30 30 H 1.09002 * 109.47209 * 209.97934 * 1 2 3 31 31 H 1.09005 * 109.46961 * 329.97830 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 33 33 H 1.09005 * 110.09583 * 299.24076 * 8 7 6 34 34 H 1.09001 * 110.09691 * 60.83804 * 8 7 6 35 35 H 1.07997 * 120.02380 * 0.29560 * 10 9 8 36 36 H 1.07999 * 119.90842 * 179.97438 * 11 10 9 37 37 H 1.08004 * 119.84274 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.09170 * 180.02562 * 13 12 11 39 39 H 1.07998 * 125.99195 * 179.73915 * 17 3 2 40 40 H 1.09005 * 109.46770 * 209.99944 * 20 19 2 41 41 H 1.08995 * 109.47419 * 329.99944 * 20 19 2 42 42 H 0.96995 * 119.99945 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0006 5 8 0.6996 2.7878 0.0017 6 7 2.8000 3.5107 0.0000 7 7 2.3834 4.8484 0.0065 8 6 2.4298 5.7635 -1.1395 9 6 1.8787 7.0798 -0.6511 10 6 1.6737 8.2983 -1.2561 11 6 1.1433 9.3507 -0.5291 12 6 0.8179 9.1806 0.8052 13 6 1.0185 7.9627 1.4211 14 6 1.5529 6.8968 0.6946 15 6 1.8809 5.5068 1.0652 16 8 1.7184 5.0255 2.1695 17 6 3.6590 0.6499 -0.0070 18 7 3.6341 -0.6544 -0.0013 19 7 2.3017 -1.0821 -0.0005 20 6 1.8501 -2.4758 -0.0003 21 6 1.6945 -2.9536 -1.4211 22 1 1.9101 -2.2857 -2.2420 23 6 1.2770 -4.2432 -1.6729 24 7 1.1408 -4.6601 -2.9128 25 14 0.9048 -5.3985 -0.2530 26 1 -0.5259 -5.2737 0.1247 27 1 1.1878 -6.7968 -0.6653 28 1 1.7568 -5.0434 0.9104 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 3.7462 3.2973 -0.0004 33 1 3.4585 5.8883 -1.4778 34 1 1.8121 5.3790 -1.9511 35 1 1.9267 8.4341 -2.2972 36 1 0.9831 10.3070 -1.0047 37 1 0.4042 10.0051 1.3668 38 1 0.7628 7.8340 2.4624 39 1 4.5449 1.2677 -0.0128 40 1 2.5850 -3.0958 0.5131 41 1 0.8917 -2.5471 0.5140 42 1 0.8467 -5.5672 -3.0899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897356606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = 86.692257 kcal Electronic energy + Delta-G solvation = -28041.742465 eV Core-core repulsion = 23990.474947 eV Total energy + Delta-G solvation = -4051.267519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47506 -40.91288 -39.03600 -37.97704 -36.31428 -34.15026 -33.72261 -32.23180 -31.51612 -31.41169 -30.06037 -27.87183 -27.07507 -26.80544 -24.30806 -23.04048 -22.34121 -22.03901 -20.77406 -19.95385 -19.24551 -17.91228 -17.32449 -17.24318 -17.23806 -16.57291 -15.88644 -15.15674 -15.10840 -15.03382 -14.73899 -14.42442 -14.30002 -14.14905 -13.71064 -13.58687 -13.56538 -13.41325 -12.86122 -12.74602 -12.60210 -12.33673 -12.27968 -12.14840 -11.67242 -11.52032 -11.27160 -10.86838 -10.53175 -10.45720 -10.32915 -9.88989 -9.82143 -9.62368 -9.44253 -9.30866 -8.96497 -8.87570 -8.73483 -8.10677 -6.35771 -4.40815 0.40181 0.86309 1.41957 1.97791 2.54012 2.62499 3.05055 3.11714 3.17048 3.23192 3.45055 3.62518 3.76417 4.06545 4.08494 4.13516 4.44548 4.57795 4.81984 4.84841 4.92659 4.97589 5.00211 5.06715 5.09343 5.28219 5.33672 5.50837 5.56750 5.72803 5.79705 5.85424 5.95850 5.99440 6.20030 6.35758 6.38257 6.42397 6.50931 6.52636 6.80920 6.90734 7.14500 7.33080 7.47283 7.85762 8.15397 8.18830 8.54360 8.66680 9.17912 10.76304 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.002162 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.672362 B =12950.164808 C =13020.114211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.177 3.823 3 C -0.323 4.323 4 C 0.609 3.391 5 O -0.531 6.531 6 N -0.504 5.504 7 N -0.415 5.415 8 C 0.145 3.855 9 C -0.076 4.076 10 C -0.101 4.101 11 C -0.087 4.087 12 C -0.127 4.127 13 C -0.043 4.043 14 C -0.145 4.145 15 C 0.565 3.435 16 O -0.506 6.506 17 C 0.064 3.936 18 N -0.288 5.288 19 N -0.311 5.311 20 C 0.224 3.776 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.082 3.918 24 N -0.882 5.882 25 Si 0.872 3.128 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.418 0.582 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.180 0.820 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 26.979 3.787 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.040 3.960 3 C -0.340 4.340 4 C 0.400 3.600 5 O -0.405 6.405 6 N -0.253 5.253 7 N -0.238 5.238 8 C 0.022 3.978 9 C -0.078 4.078 10 C -0.119 4.119 11 C -0.106 4.106 12 C -0.145 4.145 13 C -0.062 4.062 14 C -0.149 4.149 15 C 0.354 3.646 16 O -0.380 6.380 17 C -0.124 4.124 18 N -0.107 5.107 19 N -0.087 5.087 20 C 0.105 3.895 21 C -0.584 4.584 22 H 0.100 0.900 23 C -0.123 4.123 24 N -0.518 5.518 25 Si 0.698 3.302 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.260 0.740 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.197 0.803 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.173 25.300 4.279 25.752 hybrid contribution -0.057 -0.184 0.373 0.420 sum 2.116 25.116 4.652 25.631 Atomic orbital electron populations 1.20637 0.86520 1.03937 1.04374 1.21425 0.95010 0.86207 0.93338 1.19264 0.93443 0.90885 1.30404 1.17699 0.85088 0.83163 0.74098 1.90739 1.16411 1.83475 1.49902 1.44580 1.09235 0.91556 1.79885 1.46420 1.65034 1.00857 1.11442 1.20633 1.02709 0.85407 0.89013 1.20356 0.98206 0.94615 0.94591 1.20308 1.00320 0.90818 1.00471 1.21342 0.96343 0.98703 0.94172 1.21151 1.00900 0.97133 0.95281 1.20877 0.94380 0.90768 1.00160 1.20113 1.04819 0.94243 0.95765 1.18436 0.77134 0.85325 0.83743 1.90805 1.52585 1.72533 1.22075 1.23775 0.96181 0.92661 0.99799 1.77175 0.98041 1.12218 1.23269 1.48923 1.02720 1.07570 1.49471 1.20202 0.95859 0.73081 1.00338 1.21066 1.48212 0.99214 0.89905 0.89987 1.24788 0.94252 0.97408 0.95899 1.69860 1.45025 1.18277 1.18665 0.86906 0.79567 0.81057 0.82676 1.19470 1.20325 1.18756 0.89240 0.90815 0.88640 0.74028 0.88014 0.88044 0.84826 0.84815 0.84821 0.84819 0.80302 0.92549 0.93290 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.57 36.01 0.34 -1.38 16 2 C 0.18 3.54 7.01 -81.60 -0.57 2.97 16 3 C -0.32 -5.81 6.13 -105.07 -0.64 -6.45 16 4 C 0.61 10.54 7.89 -12.52 -0.10 10.44 16 5 O -0.53 -10.79 15.08 5.27 0.08 -10.71 16 6 N -0.50 -6.81 6.27 30.43 0.19 -6.62 16 7 N -0.41 -5.41 3.35 -62.40 -0.21 -5.62 16 8 C 0.14 1.26 7.62 -5.01 -0.04 1.22 16 9 C -0.08 -0.65 6.38 -104.27 -0.66 -1.32 16 10 C -0.10 -0.61 10.03 -39.74 -0.40 -1.01 16 11 C -0.09 -0.47 10.05 -39.44 -0.40 -0.86 16 12 C -0.13 -0.79 10.02 -39.64 -0.40 -1.19 16 13 C -0.04 -0.39 10.10 -39.17 -0.40 -0.78 16 14 C -0.14 -1.63 6.26 -105.05 -0.66 -2.29 16 15 C 0.57 8.52 7.96 -12.63 -0.10 8.42 16 16 O -0.51 -9.67 18.00 5.32 0.10 -9.57 16 17 C 0.06 1.05 11.50 -16.98 -0.20 0.86 16 18 N -0.29 -5.93 12.50 30.86 0.39 -5.54 16 19 N -0.31 -6.76 3.56 -57.77 -0.21 -6.97 16 20 C 0.22 5.15 5.03 -5.19 -0.03 5.13 16 21 C -0.55 -14.75 9.94 -34.44 -0.34 -15.09 16 22 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 23 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 24 N -0.88 -25.57 13.96 55.43 0.77 -24.80 16 25 Si 0.87 19.64 27.47 -169.99 -4.67 14.97 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 29 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.07 1.22 7.05 -51.93 -0.37 0.86 16 31 H 0.10 1.68 6.50 -51.93 -0.34 1.34 16 32 H 0.42 4.17 7.78 -182.59 -1.42 2.75 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 36 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 37 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.18 2.00 7.50 -52.49 -0.39 1.61 16 40 H 0.06 1.30 7.20 -51.93 -0.37 0.93 16 41 H 0.05 1.04 6.45 -51.93 -0.33 0.71 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -37.01 367.41 -8.48 -45.49 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.78 Total: 3.06 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -4.68 Total: 0.77 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.94 Total: -49.55 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.18 Total: -20.28 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.67 Total: 14.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.01 -8.48 -45.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897356606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.181 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds