Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38048 * 126.29084 * 2 1 4 4 C 1.47430 * 126.41483 * 0.03026 * 3 2 1 5 5 O 1.21603 * 120.00081 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99963 * 180.02562 * 4 3 2 7 7 N 1.40105 * 119.99775 * 180.27838 * 6 4 3 8 8 C 1.46728 * 125.62392 * 254.43723 * 7 6 4 9 9 C 1.50825 * 106.25295 * 179.91331 * 8 7 6 10 10 C 1.37576 * 133.23938 * 180.02562 * 9 8 7 11 11 C 1.38469 * 119.95794 * 180.32112 * 10 9 8 12 12 C 1.38385 * 120.18568 * 359.97438 * 11 10 9 13 13 C 1.37938 * 120.32451 * 359.97438 * 12 11 10 14 14 C 1.39624 * 119.82395 * 0.02562 * 13 12 11 15 15 C 1.34414 * 125.62254 * 74.74899 * 7 6 4 16 16 O 1.21551 * 124.86266 * 359.97438 * 15 7 6 17 17 C 1.41282 * 107.17080 * 180.29865 * 3 2 1 18 18 N 1.30458 * 108.02280 * 359.55392 * 17 3 2 19 19 N 1.34251 * 126.29328 * 180.02562 * 2 1 3 20 20 C 1.46507 * 125.75074 * 359.96260 * 19 2 1 21 21 C 1.50696 * 109.47102 * 90.00285 * 20 19 2 22 22 H 1.08001 * 119.99825 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99968 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99935 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00322 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47023 * 89.99849 * 25 23 21 27 27 H 1.48496 * 109.47317 * 210.00095 * 25 23 21 28 28 H 1.48505 * 109.46753 * 330.00254 * 25 23 21 29 29 H 1.09003 * 109.47154 * 89.97526 * 1 2 3 30 30 H 1.09002 * 109.47209 * 209.97934 * 1 2 3 31 31 H 1.09005 * 109.46961 * 329.97830 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 33 33 H 1.09005 * 110.09583 * 299.24076 * 8 7 6 34 34 H 1.09001 * 110.09691 * 60.83804 * 8 7 6 35 35 H 1.07997 * 120.02380 * 0.29560 * 10 9 8 36 36 H 1.07999 * 119.90842 * 179.97438 * 11 10 9 37 37 H 1.08004 * 119.84274 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.09170 * 180.02562 * 13 12 11 39 39 H 1.07998 * 125.99195 * 179.73915 * 17 3 2 40 40 H 1.09005 * 109.46770 * 209.99944 * 20 19 2 41 41 H 1.08995 * 109.47419 * 329.99944 * 20 19 2 42 42 H 0.96995 * 119.99945 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0006 5 8 0.6996 2.7878 0.0017 6 7 2.8000 3.5107 0.0000 7 7 2.3834 4.8484 0.0065 8 6 2.4298 5.7635 -1.1395 9 6 1.8787 7.0798 -0.6511 10 6 1.6737 8.2983 -1.2561 11 6 1.1433 9.3507 -0.5291 12 6 0.8179 9.1806 0.8052 13 6 1.0185 7.9627 1.4211 14 6 1.5529 6.8968 0.6946 15 6 1.8809 5.5068 1.0652 16 8 1.7184 5.0255 2.1695 17 6 3.6590 0.6499 -0.0070 18 7 3.6341 -0.6544 -0.0013 19 7 2.3017 -1.0821 -0.0005 20 6 1.8501 -2.4758 -0.0003 21 6 1.6945 -2.9536 -1.4211 22 1 1.9101 -2.2857 -2.2420 23 6 1.2770 -4.2432 -1.6729 24 7 1.1408 -4.6601 -2.9128 25 14 0.9048 -5.3985 -0.2530 26 1 -0.5259 -5.2737 0.1247 27 1 1.1878 -6.7968 -0.6653 28 1 1.7568 -5.0434 0.9104 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 3.7462 3.2973 -0.0004 33 1 3.4585 5.8883 -1.4778 34 1 1.8121 5.3790 -1.9511 35 1 1.9267 8.4341 -2.2972 36 1 0.9831 10.3070 -1.0047 37 1 0.4042 10.0051 1.3668 38 1 0.7628 7.8340 2.4624 39 1 4.5449 1.2677 -0.0128 40 1 2.5850 -3.0958 0.5131 41 1 0.8917 -2.5471 0.5140 42 1 0.8467 -5.5672 -3.0899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897356606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = 60.114683 kcal Electronic energy + Delta-G solvation = -28042.894955 eV Core-core repulsion = 23990.474947 eV Total energy + Delta-G solvation = -4052.420009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.56532 -42.18626 -40.18096 -39.02019 -37.37807 -35.84217 -34.96574 -33.97358 -32.95977 -32.09920 -31.06417 -29.51920 -28.30227 -27.81053 -25.48153 -24.62797 -23.50903 -22.69505 -21.90506 -21.12860 -20.74129 -19.30357 -19.11768 -18.60194 -18.05478 -17.23996 -17.10503 -16.63866 -16.44357 -16.08038 -15.94232 -15.60979 -15.58295 -15.14576 -15.01330 -14.84184 -14.53977 -14.50777 -14.25447 -14.09544 -13.88202 -13.76798 -13.40495 -13.19707 -13.08942 -12.81148 -12.58746 -12.19088 -12.13946 -11.90267 -11.86331 -11.59389 -11.19666 -10.92789 -10.80571 -10.35649 -10.30309 -9.97421 -9.74645 -9.61612 -8.44220 -6.56142 -0.27847 0.33464 0.39546 0.49250 1.19060 1.33575 1.33926 1.44068 1.60136 1.66215 2.23385 2.30060 2.79346 2.85239 2.89719 3.13392 3.30289 3.60613 3.63696 3.88286 3.92454 4.08236 4.19249 4.30419 4.34580 4.36053 4.42072 4.44466 4.54137 4.62678 4.65647 4.74289 4.96659 5.00879 5.02005 5.13241 5.15294 5.37297 5.46073 5.49960 5.59036 5.71668 5.76921 5.90380 6.14441 6.18766 6.46479 6.66895 6.71144 7.07492 7.33727 8.71927 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.002162 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.672362 B =12950.164808 C =13020.114211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.158 3.842 3 C -0.324 4.324 4 C 0.610 3.390 5 O -0.567 6.567 6 N -0.492 5.492 7 N -0.419 5.419 8 C 0.141 3.859 9 C -0.074 4.074 10 C -0.096 4.096 11 C -0.073 4.073 12 C -0.124 4.124 13 C -0.059 4.059 14 C -0.184 4.184 15 C 0.549 3.451 16 O -0.568 6.568 17 C 0.087 3.913 18 N -0.326 5.326 19 N -0.334 5.334 20 C 0.232 3.768 21 C -0.552 4.552 22 H 0.029 0.971 23 C 0.024 3.976 24 N -0.933 5.933 25 Si 0.947 3.053 26 H -0.254 1.254 27 H -0.277 1.277 28 H -0.243 1.243 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.436 0.564 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.125 0.875 39 H 0.234 0.766 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 29.708 3.806 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.021 3.979 3 C -0.341 4.341 4 C 0.400 3.600 5 O -0.445 6.445 6 N -0.240 5.240 7 N -0.240 5.240 8 C 0.021 3.979 9 C -0.076 4.076 10 C -0.114 4.114 11 C -0.091 4.091 12 C -0.142 4.142 13 C -0.079 4.079 14 C -0.188 4.188 15 C 0.340 3.660 16 O -0.446 6.446 17 C -0.100 4.100 18 N -0.145 5.145 19 N -0.110 5.110 20 C 0.112 3.888 21 C -0.590 4.590 22 H 0.048 0.952 23 C -0.176 4.176 24 N -0.571 5.571 25 Si 0.768 3.232 26 H -0.178 1.178 27 H -0.202 1.202 28 H -0.166 1.166 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.282 0.718 33 H 0.158 0.842 34 H 0.124 0.876 35 H 0.186 0.814 36 H 0.190 0.810 37 H 0.179 0.821 38 H 0.143 0.857 39 H 0.250 0.750 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.852 28.082 4.260 28.546 hybrid contribution -0.208 -0.756 0.244 0.821 sum 2.644 27.326 4.504 27.820 Atomic orbital electron populations 1.20616 0.85720 1.04464 1.04131 1.21881 0.95938 0.86583 0.93457 1.19464 0.93981 0.91038 1.29627 1.17610 0.84989 0.83561 0.73823 1.90720 1.18010 1.84075 1.51661 1.44254 1.09519 0.91926 1.78346 1.46788 1.64348 1.00237 1.12671 1.20967 1.05163 0.84557 0.87253 1.20495 0.98261 0.95506 0.93307 1.20753 0.99070 0.89528 1.02032 1.21871 0.93789 0.99936 0.93495 1.21501 1.00060 0.96433 0.96161 1.21045 0.95011 0.91664 1.00136 1.20028 1.08284 0.92818 0.97705 1.19271 0.76338 0.87024 0.83335 1.90746 1.55390 1.74104 1.24391 1.24589 0.97304 0.91726 0.96428 1.77128 0.97801 1.14201 1.25326 1.48776 1.03482 1.07285 1.51442 1.19959 0.96926 0.74245 0.97657 1.21148 1.48198 0.98849 0.90807 0.95231 1.25781 0.93667 0.99201 0.98958 1.70014 1.46508 1.19095 1.21454 0.85736 0.80397 0.77959 0.79145 1.17790 1.20205 1.16637 0.89800 0.89723 0.88577 0.71832 0.84223 0.87578 0.81412 0.80988 0.82109 0.85729 0.75035 0.92287 0.91159 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.35 9.57 71.24 0.68 -2.66 16 2 C 0.16 6.39 7.01 42.15 0.30 6.68 16 3 C -0.32 -11.62 6.13 -20.15 -0.12 -11.75 16 4 C 0.61 21.19 7.89 86.66 0.68 21.88 16 5 O -0.57 -23.67 15.08 -4.04 -0.06 -23.73 16 6 N -0.49 -12.93 6.27 -175.88 -1.10 -14.03 16 7 N -0.42 -10.76 3.35 -469.82 -1.57 -12.33 16 8 C 0.14 2.16 7.62 85.63 0.65 2.81 16 9 C -0.07 -1.11 6.38 -19.64 -0.13 -1.24 16 10 C -0.10 -0.76 10.03 22.17 0.22 -0.54 16 11 C -0.07 -0.45 10.05 22.36 0.22 -0.22 16 12 C -0.12 -1.21 10.02 22.23 0.22 -0.98 16 13 C -0.06 -1.06 10.10 22.53 0.23 -0.84 16 14 C -0.18 -4.14 6.26 -20.14 -0.13 -4.27 16 15 C 0.55 17.17 7.96 86.76 0.69 17.86 16 16 O -0.57 -23.11 18.00 -3.88 -0.07 -23.18 16 17 C 0.09 2.77 11.50 85.65 0.99 3.75 16 18 N -0.33 -13.35 12.50 -56.28 -0.70 -14.06 16 19 N -0.33 -14.69 3.56 -336.69 -1.20 -15.89 16 20 C 0.23 10.70 5.03 85.63 0.43 11.14 16 21 C -0.55 -30.82 9.94 25.60 0.25 -30.56 16 22 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 23 C 0.02 1.35 5.47 84.65 0.46 1.81 16 24 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 25 Si 0.95 40.25 27.47 68.60 1.88 42.13 16 26 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 27 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 29 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.08 2.84 7.05 -2.39 -0.02 2.82 16 31 H 0.10 3.49 6.50 -2.38 -0.02 3.47 16 32 H 0.44 7.90 7.78 -213.32 -1.66 6.24 16 33 H 0.14 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 36 H 0.17 -0.19 8.06 -2.91 -0.02 -0.21 16 37 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 38 H 0.12 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.23 4.43 7.50 -2.91 -0.02 4.40 16 40 H 0.06 2.68 7.20 -2.38 -0.02 2.66 16 41 H 0.07 2.92 6.45 -2.39 -0.02 2.91 16 42 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -88.12 367.41 2.50 -85.61 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.63 Total: 18.10 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 5.66 Total: 12.86 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -4.28 Total: -111.80 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.13 Total: -46.91 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.88 Total: 42.13 kcal Total: -88.12 2.50 -85.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897356606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.729 kcal (2) G-P(sol) polarization free energy of solvation -88.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds