Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39961 * 120.32008 * 2 1 4 4 N 1.31502 * 120.10396 * 180.02562 * 3 2 1 5 5 C 1.33376 * 120.85388 * 359.97438 * 4 3 2 6 6 C 1.40800 * 132.47921 * 180.02562 * 5 4 3 7 7 C 1.46591 * 126.53643 * 0.02562 * 6 5 4 8 8 O 1.21716 * 119.99603 * 312.74080 * 7 6 5 9 9 N 1.34770 * 120.00369 * 132.74327 * 7 6 5 10 10 C 1.46506 * 119.99782 * 5.04390 * 9 7 6 11 11 C 1.50706 * 109.46840 * 90.00378 * 10 9 7 12 12 H 1.07995 * 120.00077 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99476 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00076 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99480 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47305 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46925 * 120.00029 * 15 13 11 18 18 H 1.48494 * 109.47622 * 240.00046 * 15 13 11 19 19 C 1.46501 * 120.00336 * 185.04659 * 9 7 6 20 20 C 1.50706 * 109.47094 * 94.24520 * 19 9 7 21 21 C 1.34505 * 125.78680 * 89.99850 * 20 19 9 22 22 C 1.41391 * 106.83968 * 179.97438 * 21 20 19 23 23 C 1.34512 * 106.83892 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.78787 * 269.69403 * 20 19 9 25 25 C 1.40639 * 106.92706 * 179.97438 * 6 5 4 26 26 N 1.30701 * 108.72741 * 359.97438 * 25 6 5 27 27 N 1.36599 * 120.80082 * 0.02562 * 5 4 3 28 28 C 1.35751 * 120.32012 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47177 * 89.99991 * 1 2 3 30 30 H 1.09006 * 109.47025 * 210.00075 * 1 2 3 31 31 H 1.08998 * 109.46998 * 330.00088 * 1 2 3 32 32 H 1.07997 * 119.95092 * 359.74037 * 3 2 1 33 33 H 1.09002 * 109.46935 * 209.99917 * 10 9 7 34 34 H 1.08999 * 109.46818 * 330.00202 * 10 9 7 35 35 H 0.97003 * 119.99287 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.47115 * 214.24234 * 19 9 7 37 37 H 1.09002 * 109.46913 * 334.24466 * 19 9 7 38 38 H 1.08002 * 126.58302 * 359.96874 * 21 20 19 39 39 H 1.07999 * 126.58194 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.79183 * 180.02562 * 23 22 21 41 41 H 1.08005 * 125.63584 * 180.02562 * 25 6 5 42 42 H 1.08005 * 120.42494 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5286 1.2032 -0.0005 5 6 4.2083 0.0556 -0.0005 6 6 5.5864 -0.2333 -0.0005 7 6 6.6822 0.7404 0.0000 8 8 6.6620 1.6797 -0.7738 9 7 7.7120 0.5955 0.8572 10 6 7.7929 -0.5923 1.7109 11 6 8.5639 -1.6726 0.9969 12 1 8.9542 -1.4925 0.0062 13 6 8.7709 -2.8908 1.6086 14 7 8.2960 -3.1098 2.8153 15 14 9.7260 -4.2300 0.7233 16 1 10.1501 -3.7358 -0.6113 17 1 10.9253 -4.5921 1.5206 18 1 8.8624 -5.4265 0.5571 19 6 8.7507 1.6257 0.9352 20 6 8.4154 2.5944 2.0400 21 6 8.7973 2.4847 3.3250 22 6 8.2659 3.6034 4.0072 23 6 7.5906 4.3294 3.0982 24 8 7.6894 3.7164 1.9073 25 6 5.7110 -1.6341 0.0001 26 7 4.5153 -2.1619 0.0010 27 7 3.5552 -1.1441 -0.0005 28 6 2.1924 -1.1718 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6781 2.1460 -0.0042 33 1 8.3011 -0.3374 2.6409 34 1 6.7872 -0.9496 1.9325 35 1 8.4420 -3.9668 3.2457 36 1 9.7126 1.1569 1.1426 37 1 8.8040 2.1605 -0.0131 38 1 9.3951 1.6939 3.7536 39 1 8.3797 3.8309 5.0568 40 1 7.0630 5.2515 3.2921 41 1 6.6412 -2.1831 0.0006 42 1 1.6645 -2.1141 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900456329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = 106.315095 kcal Electronic energy + Delta-G solvation = -29422.585608 eV Core-core repulsion = 25372.169000 eV Total energy + Delta-G solvation = -4050.416608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.15646 -42.07935 -38.92754 -37.79926 -35.08233 -34.19494 -32.92969 -32.45692 -32.38373 -30.48863 -29.18759 -27.42011 -26.94386 -25.42562 -24.60611 -23.23792 -22.40746 -21.48918 -21.25724 -20.21859 -19.04110 -17.94259 -17.11448 -16.86191 -16.58883 -16.27193 -15.84461 -15.76604 -15.08087 -14.95631 -14.43374 -14.41233 -14.05621 -13.70795 -13.59214 -13.17406 -12.83928 -12.75173 -12.55471 -12.40749 -12.38552 -12.27001 -12.21201 -12.17530 -11.38844 -11.24930 -11.11724 -10.91422 -10.89033 -10.61397 -10.21945 -9.82130 -9.64000 -9.50357 -9.15511 -9.14147 -8.63935 -8.10696 -7.80044 -7.53869 -6.25203 -4.34730 0.61145 0.96206 2.09344 2.26978 2.80653 2.98047 3.19060 3.28922 3.31052 3.33005 3.46701 3.83555 4.00808 4.10827 4.28436 4.35746 4.43992 4.63288 4.91984 5.07261 5.14297 5.28986 5.31671 5.38936 5.42734 5.51653 5.59976 5.65271 5.74358 5.83639 6.09923 6.14157 6.14745 6.19107 6.36214 6.50097 6.58244 6.71922 6.91216 6.95646 7.22671 7.52203 7.60668 7.70115 7.74074 7.80353 8.00344 8.31776 8.75367 9.07669 9.33260 10.80038 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007375 B = 0.005456 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3795.488752 B = 5130.729106 C = 8047.774685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.206 4.206 3 C 0.176 3.824 4 N -0.445 5.445 5 C 0.289 3.711 6 C -0.259 4.259 7 C 0.605 3.395 8 O -0.555 6.555 9 N -0.590 5.590 10 C 0.236 3.764 11 C -0.548 4.548 12 H 0.068 0.932 13 C 0.069 3.931 14 N -0.880 5.880 15 Si 0.891 3.109 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.197 3.803 20 C -0.014 4.014 21 C -0.202 4.202 22 C -0.217 4.217 23 C -0.053 4.053 24 O -0.167 6.167 25 C 0.152 3.848 26 N -0.320 5.320 27 N -0.310 5.310 28 C 0.164 3.836 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.176 0.824 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.195 0.805 41 H 0.231 0.769 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.467 7.061 -0.881 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.212 4.212 3 C -0.008 4.008 4 N -0.155 5.155 5 C 0.059 3.941 6 C -0.275 4.275 7 C 0.393 3.607 8 O -0.434 6.434 9 N -0.320 5.320 10 C 0.116 3.884 11 C -0.586 4.586 12 H 0.086 0.914 13 C -0.135 4.135 14 N -0.516 5.516 15 Si 0.718 3.282 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.206 1.206 19 C 0.073 3.927 20 C -0.065 4.065 21 C -0.222 4.222 22 C -0.236 4.236 23 C -0.121 4.121 24 O -0.063 6.063 25 C -0.028 4.028 26 N -0.142 5.142 27 N -0.078 5.078 28 C 0.028 3.972 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.193 0.807 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.212 0.788 41 H 0.247 0.753 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.459 7.002 -1.406 13.503 hybrid contribution 0.486 -0.947 0.274 1.099 sum -10.973 6.055 -1.132 12.584 Atomic orbital electron populations 1.20535 0.87960 1.03603 1.02886 1.20426 0.98726 0.92492 1.09579 1.23372 0.89043 0.98197 0.90212 1.68180 1.08559 1.24662 1.14091 1.20240 0.93093 0.81313 0.99411 1.19381 0.89588 0.94449 1.24111 1.16814 0.80805 0.83208 0.79828 1.90720 1.78784 1.33586 1.40330 1.48044 1.22539 1.21598 1.39865 1.19524 0.98414 0.80631 0.89851 1.21608 1.35970 0.97793 1.03234 0.91371 1.24979 0.95298 0.98472 0.94796 1.69947 1.44061 1.24396 1.13240 0.86534 0.79929 0.81661 0.80076 1.19294 1.20716 1.20610 1.19680 0.91929 0.86026 0.95059 1.23261 0.97161 0.88262 0.97861 1.21664 1.06533 1.00920 0.93131 1.21776 1.03952 0.97357 1.00537 1.23931 1.04863 1.00342 0.82974 1.84102 1.57277 1.31710 1.33165 1.25346 0.96934 0.92438 0.88050 1.77702 0.96610 1.07795 1.32067 1.47107 1.05884 1.08135 1.46680 1.21850 0.79877 1.00849 0.94632 0.90723 0.91069 0.90530 0.80672 0.94410 0.94245 0.92359 0.87026 0.88816 0.83354 0.83964 0.78796 0.75343 0.80633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.03 36.01 0.36 -0.16 16 2 C -0.21 -2.14 5.86 -104.86 -0.61 -2.75 16 3 C 0.18 2.21 10.97 -17.05 -0.19 2.03 16 4 N -0.45 -8.21 10.47 -12.00 -0.13 -8.33 16 5 C 0.29 5.91 7.90 -155.84 -1.23 4.68 16 6 C -0.26 -5.84 5.09 -104.65 -0.53 -6.37 16 7 C 0.61 14.28 7.53 -12.89 -0.10 14.19 16 8 O -0.55 -14.08 16.60 5.17 0.09 -14.00 16 9 N -0.59 -13.12 2.44 -178.00 -0.43 -13.56 16 10 C 0.24 5.60 4.74 -5.19 -0.02 5.58 16 11 C -0.55 -13.38 6.81 -34.44 -0.23 -13.61 16 12 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.07 1.73 5.44 -17.82 -0.10 1.64 16 14 N -0.88 -23.31 13.29 55.43 0.74 -22.57 16 15 Si 0.89 19.53 29.54 -169.99 -5.02 14.51 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 C 0.20 3.83 6.02 -5.19 -0.03 3.80 16 20 C -0.01 -0.26 6.90 -35.63 -0.25 -0.51 16 21 C -0.20 -3.56 10.81 -39.70 -0.43 -3.99 16 22 C -0.22 -3.34 10.91 -39.70 -0.43 -3.78 16 23 C -0.05 -0.81 12.09 29.42 0.36 -0.45 16 24 O -0.17 -3.20 10.65 5.71 0.06 -3.14 16 25 C 0.15 3.31 9.74 -17.13 -0.17 3.14 16 26 N -0.32 -6.52 12.58 30.77 0.39 -6.13 16 27 N -0.31 -5.63 3.86 -11.97 -0.05 -5.67 16 28 C 0.16 2.10 10.94 -16.45 -0.18 1.92 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 32 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.04 1.02 5.83 -51.93 -0.30 0.71 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.11 1.97 8.10 -51.93 -0.42 1.55 16 37 H 0.09 1.82 7.24 -51.93 -0.38 1.44 16 38 H 0.15 2.50 8.06 -52.49 -0.42 2.08 16 39 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.20 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.23 5.16 5.33 -52.48 -0.28 4.88 16 42 H 0.18 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -33.80 367.83 -7.32 -41.12 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.72 Total: 6.87 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -3.79 Total: 5.35 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.52 Total: -56.26 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.15 Total: -17.14 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.80 -7.32 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900456329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.439 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds