Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39961 * 120.32008 * 2 1 4 4 N 1.31502 * 120.10396 * 180.02562 * 3 2 1 5 5 C 1.33376 * 120.85388 * 359.97438 * 4 3 2 6 6 C 1.40800 * 132.47921 * 180.02562 * 5 4 3 7 7 C 1.46591 * 126.53643 * 0.02562 * 6 5 4 8 8 O 1.21716 * 119.99603 * 312.74080 * 7 6 5 9 9 N 1.34770 * 120.00369 * 132.74327 * 7 6 5 10 10 C 1.46506 * 119.99782 * 5.04390 * 9 7 6 11 11 C 1.50706 * 109.46840 * 90.00378 * 10 9 7 12 12 H 1.07995 * 120.00077 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99476 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00076 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99480 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47305 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46925 * 120.00029 * 15 13 11 18 18 H 1.48494 * 109.47622 * 240.00046 * 15 13 11 19 19 C 1.46501 * 120.00336 * 185.04659 * 9 7 6 20 20 C 1.50706 * 109.47094 * 94.24520 * 19 9 7 21 21 C 1.34505 * 125.78680 * 89.99850 * 20 19 9 22 22 C 1.41391 * 106.83968 * 179.97438 * 21 20 19 23 23 C 1.34512 * 106.83892 * 0.02562 * 22 21 20 24 24 O 1.34299 * 125.78787 * 269.69403 * 20 19 9 25 25 C 1.40639 * 106.92706 * 179.97438 * 6 5 4 26 26 N 1.30701 * 108.72741 * 359.97438 * 25 6 5 27 27 N 1.36599 * 120.80082 * 0.02562 * 5 4 3 28 28 C 1.35751 * 120.32012 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47177 * 89.99991 * 1 2 3 30 30 H 1.09006 * 109.47025 * 210.00075 * 1 2 3 31 31 H 1.08998 * 109.46998 * 330.00088 * 1 2 3 32 32 H 1.07997 * 119.95092 * 359.74037 * 3 2 1 33 33 H 1.09002 * 109.46935 * 209.99917 * 10 9 7 34 34 H 1.08999 * 109.46818 * 330.00202 * 10 9 7 35 35 H 0.97003 * 119.99287 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.47115 * 214.24234 * 19 9 7 37 37 H 1.09002 * 109.46913 * 334.24466 * 19 9 7 38 38 H 1.08002 * 126.58302 * 359.96874 * 21 20 19 39 39 H 1.07999 * 126.58194 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.79183 * 180.02562 * 23 22 21 41 41 H 1.08005 * 125.63584 * 180.02562 * 25 6 5 42 42 H 1.08005 * 120.42494 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5286 1.2032 -0.0005 5 6 4.2083 0.0556 -0.0005 6 6 5.5864 -0.2333 -0.0005 7 6 6.6822 0.7404 0.0000 8 8 6.6620 1.6797 -0.7738 9 7 7.7120 0.5955 0.8572 10 6 7.7929 -0.5923 1.7109 11 6 8.5639 -1.6726 0.9969 12 1 8.9542 -1.4925 0.0062 13 6 8.7709 -2.8908 1.6086 14 7 8.2960 -3.1098 2.8153 15 14 9.7260 -4.2300 0.7233 16 1 10.1501 -3.7358 -0.6113 17 1 10.9253 -4.5921 1.5206 18 1 8.8624 -5.4265 0.5571 19 6 8.7507 1.6257 0.9352 20 6 8.4154 2.5944 2.0400 21 6 8.7973 2.4847 3.3250 22 6 8.2659 3.6034 4.0072 23 6 7.5906 4.3294 3.0982 24 8 7.6894 3.7164 1.9073 25 6 5.7110 -1.6341 0.0001 26 7 4.5153 -2.1619 0.0010 27 7 3.5552 -1.1441 -0.0005 28 6 2.1924 -1.1718 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6781 2.1460 -0.0042 33 1 8.3011 -0.3374 2.6409 34 1 6.7872 -0.9496 1.9325 35 1 8.4420 -3.9668 3.2457 36 1 9.7126 1.1569 1.1426 37 1 8.8040 2.1605 -0.0131 38 1 9.3951 1.6939 3.7536 39 1 8.3797 3.8309 5.0568 40 1 7.0630 5.2515 3.2921 41 1 6.6412 -2.1831 0.0006 42 1 1.6645 -2.1141 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900456329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = 85.008734 kcal Electronic energy + Delta-G solvation = -29423.509521 eV Core-core repulsion = 25372.169000 eV Total energy + Delta-G solvation = -4051.340522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.51520 -43.42662 -40.57156 -39.15701 -36.88045 -35.39370 -34.72293 -33.87748 -33.58450 -31.98751 -30.58634 -29.21416 -28.01185 -26.83505 -25.78351 -25.04411 -23.80553 -22.91307 -22.60366 -21.58792 -20.52895 -19.31710 -18.77830 -18.24331 -18.07621 -17.89500 -17.35357 -17.17113 -16.50454 -16.46931 -16.10398 -15.95984 -15.28674 -14.95297 -14.57112 -14.49478 -14.35257 -14.18561 -13.86897 -13.79883 -13.70865 -13.54669 -13.39512 -13.22535 -13.03384 -12.95481 -12.66575 -12.58813 -12.49565 -12.13868 -11.90330 -11.70717 -10.98687 -10.86013 -10.80995 -10.59155 -10.40202 -9.66267 -9.40238 -8.96816 -8.19970 -6.35204 -0.54125 -0.24745 0.72833 1.00220 1.18328 1.43293 1.47786 1.57895 1.66572 1.90553 2.18974 2.35277 2.38493 2.57829 2.81567 3.02664 3.13706 3.44049 3.78951 3.84148 3.93376 3.96780 4.15833 4.18919 4.24882 4.36063 4.44328 4.56419 4.58758 4.82864 4.90381 4.92798 4.95719 5.03429 5.06108 5.20138 5.21933 5.22698 5.33914 5.48885 5.62969 5.67351 5.79169 6.05448 6.25102 6.28262 6.49386 6.57026 6.80524 7.27449 7.39051 8.85717 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007375 B = 0.005456 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3795.488752 B = 5130.729106 C = 8047.774685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.171 4.171 3 C 0.190 3.810 4 N -0.497 5.497 5 C 0.289 3.711 6 C -0.313 4.313 7 C 0.603 3.397 8 O -0.586 6.586 9 N -0.590 5.590 10 C 0.258 3.742 11 C -0.545 4.545 12 H 0.063 0.937 13 C 0.032 3.968 14 N -0.912 5.912 15 Si 0.951 3.049 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.279 1.279 19 C 0.195 3.805 20 C -0.045 4.045 21 C -0.204 4.204 22 C -0.223 4.223 23 C -0.044 4.044 24 O -0.193 6.193 25 C 0.145 3.855 26 N -0.337 5.337 27 N -0.308 5.308 28 C 0.139 3.861 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.224 0.776 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.149 0.851 39 H 0.175 0.825 40 H 0.240 0.760 41 H 0.213 0.787 42 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 7.902 -0.453 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.177 4.177 3 C 0.009 3.991 4 N -0.209 5.209 5 C 0.056 3.944 6 C -0.330 4.330 7 C 0.393 3.607 8 O -0.468 6.468 9 N -0.320 5.320 10 C 0.138 3.862 11 C -0.583 4.583 12 H 0.081 0.919 13 C -0.170 4.170 14 N -0.550 5.550 15 Si 0.776 3.224 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.204 1.204 19 C 0.072 3.928 20 C -0.096 4.096 21 C -0.224 4.224 22 C -0.242 4.242 23 C -0.111 4.111 24 O -0.090 6.090 25 C -0.035 4.035 26 N -0.160 5.160 27 N -0.076 5.076 28 C 0.005 3.995 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.240 0.760 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.167 0.833 39 H 0.192 0.808 40 H 0.256 0.744 41 H 0.229 0.771 42 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -14.700 7.837 -0.972 16.687 hybrid contribution 1.099 -1.033 0.174 1.518 sum -13.601 6.804 -0.797 15.229 Atomic orbital electron populations 1.20762 0.83439 1.05744 1.04778 1.21094 1.01275 0.90583 1.04763 1.24421 0.87486 1.01194 0.85971 1.68259 1.11286 1.23946 1.17390 1.20251 0.92873 0.82679 0.98569 1.19336 0.90646 0.94410 1.28585 1.17077 0.81165 0.83117 0.79368 1.90658 1.79539 1.35053 1.41536 1.48057 1.22999 1.21699 1.39242 1.19109 0.96713 0.81091 0.89336 1.21648 1.35582 0.98210 1.02872 0.91900 1.25601 0.95942 1.00171 0.95251 1.70042 1.45379 1.25000 1.14579 0.85597 0.78606 0.79070 0.79082 1.18964 1.20337 1.20444 1.19745 0.91729 0.85827 0.95458 1.23066 0.99251 0.89103 0.98151 1.21886 1.06018 1.01607 0.92920 1.22144 1.03586 0.96324 1.02106 1.24881 1.03749 1.01006 0.81504 1.84078 1.57693 1.31983 1.35223 1.24888 0.97040 0.92310 0.89224 1.77523 0.96558 1.08601 1.33299 1.47254 1.07361 1.06881 1.46076 1.22880 0.77852 1.03770 0.95003 0.88635 0.89247 0.88182 0.75960 0.95975 0.96486 0.92249 0.85971 0.89398 0.83291 0.80794 0.74396 0.77124 0.76958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 10.03 71.24 0.71 0.25 16 2 C -0.17 -2.84 5.86 -20.02 -0.12 -2.96 16 3 C 0.19 4.15 10.97 85.16 0.93 5.09 16 4 N -0.50 -18.11 10.47 -191.88 -2.01 -20.12 16 5 C 0.29 12.14 7.90 133.98 1.06 13.20 16 6 C -0.31 -15.04 5.09 -19.89 -0.10 -15.14 16 7 C 0.60 30.47 7.53 86.42 0.65 31.13 16 8 O -0.59 -31.65 16.60 -4.40 -0.07 -31.72 16 9 N -0.59 -28.13 2.44 -835.28 -2.04 -30.17 16 10 C 0.26 13.10 4.74 85.63 0.41 13.50 16 11 C -0.54 -28.00 6.81 25.60 0.17 -27.83 16 12 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 13 C 0.03 1.66 5.44 84.66 0.46 2.12 16 14 N -0.91 -49.91 13.29 21.45 0.28 -49.63 16 15 Si 0.95 41.09 29.54 68.60 2.03 43.11 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 C 0.20 8.13 6.02 85.63 0.52 8.65 16 20 C -0.04 -1.78 6.90 24.83 0.17 -1.60 16 21 C -0.20 -7.31 10.81 22.19 0.24 -7.07 16 22 C -0.22 -6.56 10.91 22.19 0.24 -6.32 16 23 C -0.04 -1.28 12.09 66.97 0.81 -0.47 16 24 O -0.19 -7.51 10.65 -2.49 -0.03 -7.54 16 25 C 0.14 6.75 9.74 85.45 0.83 7.58 16 26 N -0.34 -14.30 12.58 -56.58 -0.71 -15.01 16 27 N -0.31 -11.20 3.86 -191.79 -0.74 -11.94 16 28 C 0.14 3.19 10.94 83.42 0.91 4.11 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.26 16 30 H 0.09 0.27 8.09 -2.38 -0.02 0.25 16 31 H 0.10 0.18 8.10 -2.39 -0.02 0.16 16 32 H 0.22 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 34 H 0.02 0.95 5.83 -2.39 -0.01 0.94 16 35 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 36 H 0.12 4.63 8.10 -2.39 -0.02 4.61 16 37 H 0.09 3.69 7.24 -2.39 -0.02 3.67 16 38 H 0.15 5.19 8.06 -2.91 -0.02 5.17 16 39 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.24 4.39 8.06 -2.91 -0.02 4.36 16 41 H 0.21 10.34 5.33 -2.91 -0.02 10.33 16 42 H 0.21 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -80.54 367.83 5.68 -74.86 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 1.07 Total: 23.92 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 7.90 Total: 24.23 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -5.21 Total: -126.86 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.10 Total: -39.26 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -80.54 5.68 -74.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900456329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.865 kcal (2) G-P(sol) polarization free energy of solvation -80.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds