Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50692 * 109.47115 * 2 1 4 4 N 1.29021 * 124.92096 * 89.99947 * 3 2 1 5 5 C 1.31781 * 117.12779 * 180.02562 * 4 3 2 6 6 C 1.50708 * 122.75107 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46678 * 305.02281 * 6 5 4 8 8 O 1.20819 * 120.00354 * 359.97438 * 7 6 5 9 9 O 1.34235 * 119.99771 * 179.97438 * 7 6 5 10 10 C 1.45193 * 116.99699 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47360 * 330.00177 * 10 9 7 12 12 C 1.53004 * 109.47036 * 90.00397 * 10 9 7 13 13 C 1.50710 * 109.46770 * 209.99887 * 10 9 7 14 14 O 1.21277 * 119.99957 * 345.79868 * 13 10 9 15 15 N 1.34777 * 119.99346 * 165.79437 * 13 10 9 16 16 C 1.46497 * 120.00650 * 4.48737 * 15 13 10 17 17 C 1.46510 * 119.99606 * 184.48338 * 15 13 10 18 18 C 1.50705 * 109.46687 * 270.00193 * 17 15 13 19 19 H 1.07995 * 120.00429 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99513 * 179.97438 * 18 17 15 21 21 N 1.31524 * 119.99985 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47120 * 60.00648 * 22 20 18 24 24 H 1.48506 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47141 * 300.00670 * 22 20 18 26 26 C 1.33635 * 114.50048 * 0.22930 * 5 4 3 27 27 S 1.70985 * 124.91423 * 269.99870 * 3 2 1 28 28 H 1.09002 * 109.47350 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47062 * 300.00236 * 1 2 3 31 31 H 1.08996 * 109.46721 * 239.99509 * 2 1 3 32 32 H 1.09004 * 109.46846 * 120.00053 * 2 1 3 33 33 H 1.08997 * 109.47098 * 185.02602 * 6 5 4 34 34 H 1.08994 * 109.47078 * 65.01956 * 6 5 4 35 35 H 1.08997 * 109.47337 * 172.25113 * 12 10 9 36 36 H 1.08997 * 109.46816 * 292.25429 * 12 10 9 37 37 H 1.08997 * 109.46920 * 52.25298 * 12 10 9 38 38 H 1.09003 * 109.46849 * 268.27466 * 16 15 13 39 39 H 1.09002 * 109.47186 * 28.26942 * 16 15 13 40 40 H 1.08997 * 109.47471 * 148.27932 * 16 15 13 41 41 H 1.09004 * 109.46869 * 29.99503 * 17 15 13 42 42 H 1.08995 * 109.47266 * 149.99911 * 17 15 13 43 43 H 0.97000 * 119.99983 * 179.97438 * 21 20 18 44 44 H 1.08007 * 126.03754 * 179.76806 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2786 2.1171 1.0579 5 6 2.7133 3.3482 0.8792 6 6 3.0392 4.2721 2.0244 7 6 1.8442 4.3830 2.9359 8 8 0.8318 3.7749 2.6815 9 8 1.9047 5.1576 4.0306 10 6 0.7161 5.2175 4.8622 11 1 -0.1688 5.0746 4.2421 12 6 0.7793 4.1159 5.9222 13 6 0.6436 6.5622 5.5389 14 8 1.6159 7.2869 5.5532 15 7 -0.5017 6.9592 6.1279 16 6 -1.6450 6.0458 6.1967 17 6 -0.6034 8.3044 6.6995 18 6 -0.1685 8.2713 8.1420 19 1 0.1521 7.3416 8.5883 20 6 -0.1787 9.4284 8.8917 21 7 -0.5686 10.5608 8.3481 22 14 0.3597 9.3875 10.6799 23 1 1.7664 8.9190 10.7627 24 1 0.2568 10.7510 11.2593 25 1 -0.5165 8.4599 11.4395 26 6 2.8363 3.7122 -0.4007 27 16 2.3586 2.3434 -1.4021 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.2920 5.2582 1.6351 34 1 3.8863 3.8737 2.5828 35 1 -0.0399 4.2448 6.6295 36 1 0.6932 3.1423 5.4399 37 1 1.7298 4.1760 6.4523 38 1 -2.2846 6.1982 5.3273 39 1 -1.2873 5.0162 6.2086 40 1 -2.2138 6.2434 7.1053 41 1 0.0392 8.9856 6.1417 42 1 -1.6361 8.6477 6.6391 43 1 -0.5762 11.3747 8.8756 44 1 3.1715 4.6747 -0.7582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919806892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -72.256907 kcal Electronic energy + Delta-G solvation = -26907.758378 eV Core-core repulsion = 22952.749506 eV Total energy + Delta-G solvation = -3955.008871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.88622 -39.98178 -38.81211 -36.32909 -34.88107 -34.64684 -32.88138 -31.99084 -31.20068 -28.63824 -27.69577 -26.15637 -25.73825 -24.40892 -23.08496 -22.15811 -20.85484 -19.96008 -18.85457 -18.19277 -17.62469 -16.65674 -16.54078 -16.09334 -15.91528 -15.62615 -15.20535 -14.82095 -14.65645 -14.56671 -14.18236 -14.08650 -13.73438 -13.36680 -13.10201 -12.88103 -12.72663 -12.45786 -12.38008 -12.07555 -12.04925 -11.99704 -11.75339 -11.59419 -11.47082 -11.31689 -11.18979 -10.88451 -10.67473 -10.53904 -10.46245 -10.15862 -9.85735 -9.66167 -9.66008 -9.05696 -8.87700 -8.43951 -7.71255 -6.05043 -4.09855 0.40296 1.05462 1.40107 2.22861 2.28427 2.78599 3.26490 3.32422 3.36576 3.40896 3.65580 3.92885 4.36675 4.44031 4.67558 4.72050 4.78492 4.85330 4.88122 4.92991 5.06633 5.11524 5.15632 5.21275 5.29425 5.34033 5.45196 5.46147 5.59983 5.70421 5.75168 5.80960 5.89210 5.89934 6.09555 6.28825 6.49210 6.99663 7.38535 7.47305 7.49333 7.79885 7.90905 8.20743 8.30784 8.85662 9.00296 9.54904 11.03124 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025745 B = 0.002110 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.331378 B =13266.425763 C =13645.431125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.056 3.944 4 N -0.448 5.448 5 C 0.081 3.919 6 C -0.038 4.038 7 C 0.463 3.537 8 O -0.494 6.494 9 O -0.327 6.327 10 C 0.073 3.927 11 H 0.102 0.898 12 C -0.170 4.170 13 C 0.507 3.493 14 O -0.518 6.518 15 N -0.597 5.597 16 C 0.067 3.933 17 C 0.247 3.753 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.251 4.251 27 S 0.115 5.885 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -20.770 -19.839 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.223 4.223 4 N -0.161 5.161 5 C -0.051 4.051 6 C -0.078 4.078 7 C 0.305 3.695 8 O -0.380 6.380 9 O -0.243 6.243 10 C 0.015 3.985 11 H 0.120 0.880 12 C -0.227 4.227 13 C 0.292 3.708 14 O -0.393 6.393 15 N -0.330 5.330 16 C -0.076 4.076 17 C 0.129 3.871 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.390 4.390 27 S 0.370 5.630 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.787 -20.758 -20.409 29.356 hybrid contribution 0.261 0.688 1.734 1.884 sum 4.048 -20.070 -18.674 27.712 Atomic orbital electron populations 1.21774 0.93298 1.02525 1.03027 1.20226 0.96944 0.87398 1.04149 1.27068 1.02852 1.01783 0.90586 1.65980 1.13219 1.05473 1.31434 1.19528 1.01226 0.91397 0.92989 1.19808 0.95909 1.00160 0.91891 1.23296 0.89582 0.76340 0.80327 1.90664 1.32353 1.42541 1.72452 1.86612 1.40358 1.62657 1.34639 1.22613 0.87632 0.96108 0.92190 0.88049 1.22289 1.04623 0.97263 0.98529 1.19802 0.84012 0.86701 0.80318 1.90701 1.34649 1.54935 1.59035 1.48082 1.11327 1.17330 1.56308 1.21970 0.89748 0.93535 1.02373 1.19342 0.97840 0.76367 0.93580 1.21377 1.44630 0.94926 0.95609 0.92409 1.24942 0.95171 0.95200 0.98816 1.69925 1.47406 0.99230 1.36849 0.86537 0.79361 0.77036 0.84366 1.20123 1.21174 1.20243 1.26789 1.12103 1.04540 0.95584 1.83917 1.60556 1.05498 1.12986 0.92456 0.91400 0.91536 0.89732 0.88725 0.85740 0.85772 0.89206 0.91154 0.90667 0.93447 0.91562 0.90278 0.93839 0.94635 0.92626 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.90 37.16 0.37 -0.65 16 2 C -0.05 -0.32 6.52 -27.88 -0.18 -0.51 16 3 C 0.06 0.55 6.64 -13.46 -0.09 0.46 16 4 N -0.45 -5.56 9.68 -8.06 -0.08 -5.64 16 5 C 0.08 0.91 5.64 -84.22 -0.47 0.43 16 6 C -0.04 -0.40 6.31 -29.03 -0.18 -0.58 16 7 C 0.46 6.83 7.90 36.01 0.28 7.11 16 8 O -0.49 -8.26 14.67 -18.74 -0.27 -8.53 16 9 O -0.33 -5.57 9.46 -45.80 -0.43 -6.00 16 10 C 0.07 1.26 2.17 -27.88 -0.06 1.20 16 11 H 0.10 1.64 6.70 -51.93 -0.35 1.29 16 12 C -0.17 -2.47 9.15 37.16 0.34 -2.13 16 13 C 0.51 11.09 7.00 -10.98 -0.08 11.01 16 14 O -0.52 -13.61 16.19 -13.66 -0.22 -13.84 16 15 N -0.60 -12.93 2.86 -182.94 -0.52 -13.45 16 16 C 0.07 1.09 9.86 59.85 0.59 1.68 16 17 C 0.25 6.52 5.14 -5.19 -0.03 6.49 16 18 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 22 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.25 -2.25 11.07 29.12 0.32 -1.93 16 27 S 0.11 0.92 23.18 -107.50 -2.49 -1.57 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.12 1.00 8.03 -51.93 -0.42 0.58 16 34 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.22 5.52 -51.93 -0.29 0.93 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.90 4.21 -51.93 -0.22 0.68 16 40 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 41 H 0.04 1.29 7.49 -51.93 -0.39 0.90 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.18 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -36.66 387.85 -8.34 -45.01 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.27 Total: -1.76 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 0.39 Total: 8.94 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.14 Total: -44.99 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.93 Total: -28.37 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.66 -8.34 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919806892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.252 kcal (2) G-P(sol) polarization free energy of solvation -36.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds