Wall clock time and date at job start Sat Apr 11 2020 05:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50692 * 109.47115 * 2 1 4 4 N 1.29021 * 124.92096 * 89.99947 * 3 2 1 5 5 C 1.31781 * 117.12779 * 180.02562 * 4 3 2 6 6 C 1.50708 * 122.75107 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46678 * 305.02281 * 6 5 4 8 8 O 1.20819 * 120.00354 * 359.97438 * 7 6 5 9 9 O 1.34235 * 119.99771 * 179.97438 * 7 6 5 10 10 C 1.45193 * 116.99699 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47360 * 330.00177 * 10 9 7 12 12 C 1.53004 * 109.47036 * 90.00397 * 10 9 7 13 13 C 1.50710 * 109.46770 * 209.99887 * 10 9 7 14 14 O 1.21277 * 119.99957 * 345.79868 * 13 10 9 15 15 N 1.34777 * 119.99346 * 165.79437 * 13 10 9 16 16 C 1.46497 * 120.00650 * 4.48737 * 15 13 10 17 17 C 1.46510 * 119.99606 * 184.48338 * 15 13 10 18 18 C 1.50705 * 109.46687 * 270.00193 * 17 15 13 19 19 H 1.07995 * 120.00429 * 0.02562 * 18 17 15 20 20 C 1.37878 * 119.99513 * 179.97438 * 18 17 15 21 21 N 1.31524 * 119.99985 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47120 * 60.00648 * 22 20 18 24 24 H 1.48506 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47141 * 300.00670 * 22 20 18 26 26 C 1.33635 * 114.50048 * 0.22930 * 5 4 3 27 27 S 1.70985 * 124.91423 * 269.99870 * 3 2 1 28 28 H 1.09002 * 109.47350 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47062 * 300.00236 * 1 2 3 31 31 H 1.08996 * 109.46721 * 239.99509 * 2 1 3 32 32 H 1.09004 * 109.46846 * 120.00053 * 2 1 3 33 33 H 1.08997 * 109.47098 * 185.02602 * 6 5 4 34 34 H 1.08994 * 109.47078 * 65.01956 * 6 5 4 35 35 H 1.08997 * 109.47337 * 172.25113 * 12 10 9 36 36 H 1.08997 * 109.46816 * 292.25429 * 12 10 9 37 37 H 1.08997 * 109.46920 * 52.25298 * 12 10 9 38 38 H 1.09003 * 109.46849 * 268.27466 * 16 15 13 39 39 H 1.09002 * 109.47186 * 28.26942 * 16 15 13 40 40 H 1.08997 * 109.47471 * 148.27932 * 16 15 13 41 41 H 1.09004 * 109.46869 * 29.99503 * 17 15 13 42 42 H 1.08995 * 109.47266 * 149.99911 * 17 15 13 43 43 H 0.97000 * 119.99983 * 179.97438 * 21 20 18 44 44 H 1.08007 * 126.03754 * 179.76806 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2786 2.1171 1.0579 5 6 2.7133 3.3482 0.8792 6 6 3.0392 4.2721 2.0244 7 6 1.8442 4.3830 2.9359 8 8 0.8318 3.7749 2.6815 9 8 1.9047 5.1576 4.0306 10 6 0.7161 5.2175 4.8622 11 1 -0.1688 5.0746 4.2421 12 6 0.7793 4.1159 5.9222 13 6 0.6436 6.5622 5.5389 14 8 1.6159 7.2869 5.5532 15 7 -0.5017 6.9592 6.1279 16 6 -1.6450 6.0458 6.1967 17 6 -0.6034 8.3044 6.6995 18 6 -0.1685 8.2713 8.1420 19 1 0.1521 7.3416 8.5883 20 6 -0.1787 9.4284 8.8917 21 7 -0.5686 10.5608 8.3481 22 14 0.3597 9.3875 10.6799 23 1 1.7664 8.9190 10.7627 24 1 0.2568 10.7510 11.2593 25 1 -0.5165 8.4599 11.4395 26 6 2.8363 3.7122 -0.4007 27 16 2.3586 2.3434 -1.4021 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.2920 5.2582 1.6351 34 1 3.8863 3.8737 2.5828 35 1 -0.0399 4.2448 6.6295 36 1 0.6932 3.1423 5.4399 37 1 1.7298 4.1760 6.4523 38 1 -2.2846 6.1982 5.3273 39 1 -1.2873 5.0162 6.2086 40 1 -2.2138 6.2434 7.1053 41 1 0.0392 8.9856 6.1417 42 1 -1.6361 8.6477 6.6391 43 1 -0.5762 11.3747 8.8756 44 1 3.1715 4.6747 -0.7582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919806892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:19 Heat of formation + Delta-G solvation = -95.271844 kcal Electronic energy + Delta-G solvation = -26908.756380 eV Core-core repulsion = 22952.749506 eV Total energy + Delta-G solvation = -3956.006874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03266 -41.00715 -40.29290 -37.61688 -36.70402 -35.28018 -34.88972 -33.28233 -32.18287 -29.70859 -29.32918 -27.68973 -26.41488 -25.97235 -24.63017 -23.17307 -21.94719 -20.67550 -20.45369 -19.23595 -18.70257 -18.60095 -18.05214 -17.42222 -17.28441 -16.71454 -16.43681 -16.20379 -16.10409 -15.44575 -15.34655 -14.93549 -14.81292 -14.70167 -14.29490 -14.05070 -13.89959 -13.79907 -13.62894 -13.46036 -13.34301 -13.09090 -13.01795 -12.85639 -12.61642 -12.54513 -12.44141 -12.39239 -12.18748 -12.00648 -11.93019 -11.74294 -11.63541 -10.65017 -10.63214 -10.55972 -10.34478 -9.72037 -9.54312 -8.23435 -6.37921 -0.27555 0.41925 0.70754 1.10759 1.23262 1.37207 1.41741 1.48530 1.59096 1.83647 2.34426 2.45926 3.00673 3.06519 3.37133 3.57192 3.72613 3.81192 3.86730 4.04036 4.18906 4.21234 4.28157 4.33032 4.43749 4.52986 4.57242 4.60306 4.62615 4.69774 4.83564 4.92841 4.97208 5.03791 5.09046 5.12394 5.16943 5.31568 5.34494 5.50667 5.76697 6.02658 6.52541 6.67183 6.70114 6.80675 7.18597 7.35067 8.83947 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025745 B = 0.002110 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.331378 B =13266.425763 C =13645.431125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.038 3.962 4 N -0.486 5.486 5 C 0.053 3.947 6 C -0.033 4.033 7 C 0.462 3.538 8 O -0.515 6.515 9 O -0.344 6.344 10 C 0.083 3.917 11 H 0.115 0.885 12 C -0.162 4.162 13 C 0.500 3.500 14 O -0.574 6.574 15 N -0.601 5.601 16 C 0.061 3.939 17 C 0.260 3.740 18 C -0.543 4.543 19 H 0.055 0.945 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.278 1.278 25 H -0.259 1.259 26 C -0.252 4.252 27 S 0.159 5.841 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.037 0.963 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.078 0.922 41 H -0.001 1.001 42 H 0.031 0.969 43 H 0.268 0.732 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 -22.775 -20.492 30.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.240 4.240 4 N -0.201 5.201 5 C -0.079 4.079 6 C -0.073 4.073 7 C 0.305 3.695 8 O -0.403 6.403 9 O -0.260 6.260 10 C 0.025 3.975 11 H 0.133 0.867 12 C -0.219 4.219 13 C 0.287 3.713 14 O -0.454 6.454 15 N -0.333 5.333 16 C -0.080 4.080 17 C 0.139 3.861 18 C -0.582 4.582 19 H 0.074 0.926 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.793 3.207 23 H -0.203 1.203 24 H -0.203 1.203 25 H -0.184 1.184 26 C -0.391 4.391 27 S 0.415 5.585 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.017 0.983 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.751 -22.813 -21.079 31.287 hybrid contribution 0.238 1.295 1.797 2.228 sum 3.988 -21.518 -19.282 29.167 Atomic orbital electron populations 1.21742 0.93333 1.03445 1.01690 1.20368 0.96813 0.86308 1.05315 1.27533 1.02608 1.02840 0.91062 1.65980 1.14616 1.06374 1.33121 1.19658 1.02888 0.91528 0.93804 1.19977 0.94306 1.01695 0.91309 1.24114 0.90557 0.75161 0.79638 1.90644 1.33551 1.43372 1.72733 1.86631 1.40205 1.63615 1.35588 1.22452 0.88603 0.93533 0.92922 0.86730 1.22273 1.04726 0.96985 0.97945 1.20642 0.83024 0.87980 0.79659 1.90660 1.36602 1.56965 1.61150 1.48077 1.13074 1.16515 1.55657 1.22280 0.88327 0.93885 1.03529 1.18856 0.96224 0.78414 0.92575 1.21643 1.44877 0.95071 0.96570 0.92643 1.25870 0.94999 0.94734 1.03573 1.70044 1.48154 0.99898 1.38664 0.85453 0.78789 0.77666 0.78824 1.20339 1.20344 1.18365 1.27175 1.10778 1.05890 0.95239 1.83719 1.59270 1.04222 1.11327 0.92202 0.89375 0.94342 0.87044 0.89069 0.83237 0.84258 0.88045 0.89219 0.91401 0.91033 0.88513 0.90276 0.98282 0.95079 0.92337 0.77767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.90 71.98 0.71 -1.11 16 2 C -0.05 -0.60 6.52 29.85 0.19 -0.40 16 3 C 0.04 0.70 6.64 88.52 0.59 1.29 16 4 N -0.49 -11.74 9.68 -179.40 -1.74 -13.48 16 5 C 0.05 1.13 5.64 41.52 0.23 1.37 16 6 C -0.03 -0.67 6.31 29.10 0.18 -0.49 16 7 C 0.46 13.35 7.90 71.24 0.56 13.91 16 8 O -0.52 -16.94 14.67 21.99 0.32 -16.62 16 9 O -0.34 -11.66 9.46 -45.23 -0.43 -12.08 16 10 C 0.08 2.82 2.17 29.85 0.06 2.88 16 11 H 0.12 3.56 6.70 -2.39 -0.02 3.55 16 12 C -0.16 -4.47 9.15 71.98 0.66 -3.81 16 13 C 0.50 22.25 7.00 87.66 0.61 22.86 16 14 O -0.57 -31.47 16.19 15.36 0.25 -31.22 16 15 N -0.60 -26.32 2.86 -851.09 -2.43 -28.75 16 16 C 0.06 1.89 9.86 127.77 1.26 3.15 16 17 C 0.26 14.20 5.14 85.63 0.44 14.64 16 18 C -0.54 -31.46 9.39 25.60 0.24 -31.22 16 19 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 20 C 0.01 0.42 5.46 84.65 0.46 0.89 16 21 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 22 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 C -0.25 -4.03 11.07 66.77 0.74 -3.29 16 27 S 0.16 2.22 23.18 -56.49 -1.31 0.91 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.15 2.16 8.03 -2.39 -0.02 2.14 16 34 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.10 2.52 5.52 -2.39 -0.01 2.50 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 2.39 4.21 -2.39 -0.01 2.38 16 40 H 0.08 2.46 8.08 -2.39 -0.02 2.44 16 41 H 0.00 -0.06 7.49 -2.38 -0.02 -0.08 16 42 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -82.55 387.85 4.94 -77.61 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.01 Total: 11.90 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 6.95 Total: 20.68 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -3.88 Total: -98.22 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: 0.14 Total: -59.93 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.31 Total: 0.91 kcal Total: -82.55 4.94 -77.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919806892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.665 kcal (2) G-P(sol) polarization free energy of solvation -82.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds