Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47641 * 2 1 4 4 O 1.42899 * 109.47088 * 185.00400 * 3 2 1 5 5 C 1.53002 * 109.47280 * 120.00465 * 2 1 3 6 6 C 1.50701 * 109.46768 * 299.99468 * 5 2 1 7 7 C 1.38239 * 119.98841 * 270.25358 * 6 5 2 8 8 C 1.38212 * 120.01553 * 180.30134 * 7 6 5 9 9 C 1.38361 * 119.98341 * 359.46433 * 8 7 6 10 10 Cl 1.73597 * 120.00859 * 180.27890 * 9 8 7 11 11 C 1.38346 * 119.97306 * 0.25744 * 9 8 7 12 12 C 1.38210 * 119.98768 * 0.02562 * 11 9 8 13 13 N 1.46909 * 109.46839 * 239.99822 * 2 1 3 14 14 C 1.46899 * 110.99869 * 60.00155 * 13 2 1 15 15 C 1.50697 * 109.47463 * 179.97438 * 14 13 2 16 16 O 1.21283 * 119.99609 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00644 * 180.02562 * 15 14 13 18 18 C 1.46490 * 120.00668 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47646 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99775 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00087 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00241 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46991 * 90.00247 * 23 21 19 25 25 H 1.48500 * 109.46785 * 210.00077 * 23 21 19 26 26 H 1.48493 * 109.47120 * 329.99895 * 23 21 19 27 27 H 1.09010 * 109.46833 * 300.00068 * 1 2 3 28 28 H 1.08998 * 109.47088 * 59.99462 * 1 2 3 29 29 H 1.08992 * 109.47673 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47099 * 305.00391 * 3 2 1 31 31 H 1.08993 * 109.46934 * 65.00263 * 3 2 1 32 32 H 0.96708 * 113.99523 * 180.02562 * 4 3 2 33 33 H 1.08991 * 109.47255 * 179.97438 * 5 2 1 34 34 H 1.09000 * 109.47037 * 59.99102 * 5 2 1 35 35 H 1.08004 * 119.99430 * 0.04332 * 7 6 5 36 36 H 1.08002 * 120.01126 * 179.75014 * 8 7 6 37 37 H 1.08002 * 120.00348 * 180.02562 * 11 9 8 38 38 H 1.08002 * 119.99295 * 179.97438 * 12 11 9 39 39 H 1.00901 * 110.99922 * 183.95597 * 13 2 1 40 40 H 1.08998 * 109.47156 * 300.00494 * 14 13 2 41 41 H 1.09002 * 109.46868 * 59.99859 * 14 13 2 42 42 H 0.97008 * 119.99462 * 0.02562 * 17 15 14 43 43 H 1.09004 * 109.46925 * 300.00003 * 18 17 15 44 44 H 1.09002 * 109.47208 * 59.99900 * 18 17 15 45 45 H 0.96995 * 120.00294 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4642 1.4440 -0.1175 5 6 2.0400 -0.7214 1.2492 6 6 1.5377 -0.0109 2.4797 7 6 2.2826 1.0096 3.0407 8 6 1.8255 1.6573 4.1729 9 6 0.6168 1.2917 4.7382 10 17 0.0386 2.1097 6.1560 11 6 -0.1310 0.2742 4.1729 12 6 0.3300 -0.3767 3.0442 13 7 2.0196 -0.6926 -1.1995 14 6 1.5485 -0.0265 -2.4211 15 6 2.0700 -0.7630 -3.6280 16 8 2.7660 -1.7458 -3.4845 17 7 1.7639 -0.3291 -4.8667 18 6 2.2704 -1.0454 -6.0398 19 6 1.7883 -0.3612 -7.2931 20 1 1.1672 0.5194 -7.2227 21 6 2.1412 -0.8590 -8.5295 22 7 2.8989 -1.9305 -8.6152 23 14 1.5430 -0.0113 -10.0829 24 1 2.5277 1.0216 -10.4937 25 1 1.3954 -1.0139 -11.1683 26 1 0.2305 0.6322 -9.8216 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.6054 1.9815 -0.8418 31 1 1.7518 1.9297 0.9313 32 1 3.8573 2.3275 -0.1238 33 1 3.1299 -0.7217 1.2489 34 1 1.6765 -1.7490 1.2492 35 1 3.2240 1.2980 2.5968 36 1 2.4095 2.4519 4.6135 37 1 -1.0748 -0.0114 4.6135 38 1 -0.2535 -1.1713 2.6030 39 1 3.0261 -0.7627 -1.1910 40 1 0.4587 -0.0265 -2.4378 41 1 1.9121 1.0010 -2.4379 42 1 1.2082 0.4577 -4.9813 43 1 3.3603 -1.0457 -6.0228 44 1 1.9065 -2.0727 -6.0234 45 1 3.1468 -2.2808 -9.4851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933449591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -74.820334 kcal Electronic energy + Delta-G solvation = -26753.560899 eV Core-core repulsion = 22796.397163 eV Total energy + Delta-G solvation = -3957.163736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43380 -39.05764 -38.08027 -36.81315 -35.64048 -34.14703 -33.04162 -32.28651 -31.49857 -30.17297 -27.94941 -27.16247 -26.28793 -25.33940 -23.12970 -22.51532 -21.72882 -19.66921 -19.30650 -17.69700 -17.41462 -17.32420 -16.25397 -15.94061 -15.81544 -15.69940 -15.18052 -15.06835 -14.68674 -14.40174 -14.06555 -13.89995 -13.75685 -13.58033 -13.46315 -12.85070 -12.71520 -12.47879 -12.40866 -12.13570 -11.95161 -11.88557 -11.80963 -11.49831 -11.42006 -11.25051 -11.13902 -10.98331 -10.91221 -10.85047 -10.31924 -10.25925 -9.38963 -9.38780 -9.04197 -8.85958 -8.72552 -8.32483 -7.83978 -6.15960 -4.22933 0.74299 0.89979 1.75881 3.19834 3.23902 3.29987 3.32405 3.43039 3.67972 4.03043 4.30361 4.37653 4.46029 4.50652 4.58424 4.66389 4.78767 4.94639 4.98821 5.07144 5.19560 5.19907 5.21214 5.30223 5.37376 5.46513 5.54874 5.58256 5.64211 5.67823 5.74080 5.84345 5.85925 5.93570 6.01206 6.26170 6.43134 6.96238 7.30662 7.34570 7.46708 7.50677 7.54277 7.68697 7.98416 8.65912 8.80265 9.15148 9.43897 10.94216 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.001768 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.966409 B =15835.839122 C =15910.937056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.126 3.874 3 C 0.037 3.963 4 O -0.567 6.567 5 C -0.070 4.070 6 C -0.066 4.066 7 C -0.102 4.102 8 C -0.112 4.112 9 C -0.041 4.041 10 Cl -0.077 7.077 11 C -0.111 4.111 12 C -0.102 4.102 13 N -0.653 5.653 14 C 0.037 3.963 15 C 0.498 3.502 16 O -0.543 6.543 17 N -0.716 5.716 18 C 0.251 3.749 19 C -0.543 4.543 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.379 0.621 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.360 0.640 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.389 0.611 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 10.015 28.015 30.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.034 3.966 3 C -0.042 4.042 4 O -0.372 6.372 5 C -0.108 4.108 6 C -0.066 4.066 7 C -0.121 4.121 8 C -0.131 4.131 9 C -0.067 4.067 10 Cl -0.048 7.048 11 C -0.129 4.129 12 C -0.120 4.120 13 N -0.286 5.286 14 C -0.095 4.095 15 C 0.282 3.718 16 O -0.421 6.421 17 N -0.365 5.365 18 C 0.130 3.870 19 C -0.582 4.582 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.226 0.774 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.181 0.819 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.221 0.779 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.592 8.101 28.051 29.728 hybrid contribution -0.024 2.423 -0.848 2.567 sum -5.616 10.524 27.202 29.703 Atomic orbital electron populations 1.21988 0.93071 1.03431 1.01996 1.20878 0.95285 0.89605 0.90839 1.23101 0.81723 0.99183 1.00220 1.86443 1.19799 1.33817 1.97117 1.20586 1.01875 0.99104 0.89205 1.19990 0.94341 0.95790 0.96501 1.21137 1.00344 0.95585 0.94996 1.21060 0.94811 1.00795 0.96395 1.20940 0.96485 0.97705 0.91583 1.98372 1.88708 1.78429 1.39317 1.21060 1.00130 0.95332 0.96399 1.21126 0.95827 0.99971 0.95072 1.60308 1.18498 1.50962 0.98833 1.21900 1.01525 0.96235 0.89872 1.20339 0.81593 0.85368 0.84541 1.90663 1.38487 1.26671 1.86260 1.46433 1.52232 1.31371 1.06442 1.19077 0.95027 0.92481 0.80408 1.21231 1.33244 1.13109 0.90591 0.91954 1.24957 0.94855 0.94941 0.99294 1.69975 1.35366 1.21784 1.25096 0.86417 0.79079 0.79130 0.82281 1.20502 1.20992 1.19782 0.91836 0.92174 0.90729 0.93475 0.92879 0.77404 0.89760 0.89527 0.84794 0.85139 0.85011 0.84786 0.81899 0.88630 0.92822 0.77923 0.95640 0.95544 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.65 37.16 0.28 -1.00 16 2 C 0.13 1.23 0.56 -131.60 -0.07 1.15 16 3 C 0.04 0.32 4.96 37.16 0.18 0.51 16 4 O -0.57 -5.09 12.52 -35.23 -0.44 -5.53 16 5 C -0.07 -0.63 4.61 -27.88 -0.13 -0.76 16 6 C -0.07 -0.52 4.03 -104.62 -0.42 -0.94 16 7 C -0.10 -0.76 7.75 -39.59 -0.31 -1.07 16 8 C -0.11 -0.82 9.83 -39.55 -0.39 -1.21 16 9 C -0.04 -0.32 6.32 -39.50 -0.25 -0.57 16 10 Cl -0.08 -0.59 28.96 -51.86 -1.50 -2.09 16 11 C -0.11 -0.80 9.83 -39.55 -0.39 -1.19 16 12 C -0.10 -0.74 7.88 -39.59 -0.31 -1.05 16 13 N -0.65 -8.79 5.67 -101.22 -0.57 -9.37 16 14 C 0.04 0.52 5.38 -4.98 -0.03 0.50 16 15 C 0.50 9.94 7.87 -10.99 -0.09 9.85 16 16 O -0.54 -13.22 16.20 5.56 0.09 -13.13 16 17 N -0.72 -15.04 5.55 -61.48 -0.34 -15.39 16 18 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 19 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 20 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.88 -26.16 13.29 55.43 0.74 -25.42 16 23 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.06 0.48 6.18 -51.92 -0.32 0.16 16 28 H 0.06 0.52 6.40 -51.93 -0.33 0.19 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.41 6.68 -51.93 -0.35 0.07 16 31 H 0.05 0.41 5.82 -51.93 -0.30 0.10 16 32 H 0.38 1.97 9.12 45.56 0.42 2.38 16 33 H 0.08 0.83 7.77 -51.93 -0.40 0.43 16 34 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.13 0.91 8.01 -52.48 -0.42 0.49 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 0.81 8.03 -52.49 -0.42 0.39 16 39 H 0.36 5.46 7.82 -39.29 -0.31 5.15 16 40 H 0.10 1.19 6.30 -51.93 -0.33 0.86 16 41 H 0.05 0.68 6.42 -51.93 -0.33 0.34 16 42 H 0.39 6.94 8.32 -40.82 -0.34 6.60 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -33.12 381.26 -9.17 -42.29 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.51 Total: 9.63 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.36 Total: -2.55 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.18 Total: -50.17 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.35 Total: -18.66 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.12 -9.17 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933449591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.530 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds