Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47641 * 2 1 4 4 O 1.42899 * 109.47088 * 185.00400 * 3 2 1 5 5 C 1.53002 * 109.47280 * 120.00465 * 2 1 3 6 6 C 1.50701 * 109.46768 * 299.99468 * 5 2 1 7 7 C 1.38239 * 119.98841 * 270.25358 * 6 5 2 8 8 C 1.38212 * 120.01553 * 180.30134 * 7 6 5 9 9 C 1.38361 * 119.98341 * 359.46433 * 8 7 6 10 10 Cl 1.73597 * 120.00859 * 180.27890 * 9 8 7 11 11 C 1.38346 * 119.97306 * 0.25744 * 9 8 7 12 12 C 1.38210 * 119.98768 * 0.02562 * 11 9 8 13 13 N 1.46909 * 109.46839 * 239.99822 * 2 1 3 14 14 C 1.46899 * 110.99869 * 60.00155 * 13 2 1 15 15 C 1.50697 * 109.47463 * 179.97438 * 14 13 2 16 16 O 1.21283 * 119.99609 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00644 * 180.02562 * 15 14 13 18 18 C 1.46490 * 120.00668 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47646 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99775 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00087 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00241 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46991 * 90.00247 * 23 21 19 25 25 H 1.48500 * 109.46785 * 210.00077 * 23 21 19 26 26 H 1.48493 * 109.47120 * 329.99895 * 23 21 19 27 27 H 1.09010 * 109.46833 * 300.00068 * 1 2 3 28 28 H 1.08998 * 109.47088 * 59.99462 * 1 2 3 29 29 H 1.08992 * 109.47673 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47099 * 305.00391 * 3 2 1 31 31 H 1.08993 * 109.46934 * 65.00263 * 3 2 1 32 32 H 0.96708 * 113.99523 * 180.02562 * 4 3 2 33 33 H 1.08991 * 109.47255 * 179.97438 * 5 2 1 34 34 H 1.09000 * 109.47037 * 59.99102 * 5 2 1 35 35 H 1.08004 * 119.99430 * 0.04332 * 7 6 5 36 36 H 1.08002 * 120.01126 * 179.75014 * 8 7 6 37 37 H 1.08002 * 120.00348 * 180.02562 * 11 9 8 38 38 H 1.08002 * 119.99295 * 179.97438 * 12 11 9 39 39 H 1.00901 * 110.99922 * 183.95597 * 13 2 1 40 40 H 1.08998 * 109.47156 * 300.00494 * 14 13 2 41 41 H 1.09002 * 109.46868 * 59.99859 * 14 13 2 42 42 H 0.97008 * 119.99462 * 0.02562 * 17 15 14 43 43 H 1.09004 * 109.46925 * 300.00003 * 18 17 15 44 44 H 1.09002 * 109.47208 * 59.99900 * 18 17 15 45 45 H 0.96995 * 120.00294 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4642 1.4440 -0.1175 5 6 2.0400 -0.7214 1.2492 6 6 1.5377 -0.0109 2.4797 7 6 2.2826 1.0096 3.0407 8 6 1.8255 1.6573 4.1729 9 6 0.6168 1.2917 4.7382 10 17 0.0386 2.1097 6.1560 11 6 -0.1310 0.2742 4.1729 12 6 0.3300 -0.3767 3.0442 13 7 2.0196 -0.6926 -1.1995 14 6 1.5485 -0.0265 -2.4211 15 6 2.0700 -0.7630 -3.6280 16 8 2.7660 -1.7458 -3.4845 17 7 1.7639 -0.3291 -4.8667 18 6 2.2704 -1.0454 -6.0398 19 6 1.7883 -0.3612 -7.2931 20 1 1.1672 0.5194 -7.2227 21 6 2.1412 -0.8590 -8.5295 22 7 2.8989 -1.9305 -8.6152 23 14 1.5430 -0.0113 -10.0829 24 1 2.5277 1.0216 -10.4937 25 1 1.3954 -1.0139 -11.1683 26 1 0.2305 0.6322 -9.8216 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0275 0.0005 30 1 1.6054 1.9815 -0.8418 31 1 1.7518 1.9297 0.9313 32 1 3.8573 2.3275 -0.1238 33 1 3.1299 -0.7217 1.2489 34 1 1.6765 -1.7490 1.2492 35 1 3.2240 1.2980 2.5968 36 1 2.4095 2.4519 4.6135 37 1 -1.0748 -0.0114 4.6135 38 1 -0.2535 -1.1713 2.6030 39 1 3.0261 -0.7627 -1.1910 40 1 0.4587 -0.0265 -2.4378 41 1 1.9121 1.0010 -2.4379 42 1 1.2082 0.4577 -4.9813 43 1 3.3603 -1.0457 -6.0228 44 1 1.9065 -2.0727 -6.0234 45 1 3.1468 -2.2808 -9.4851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933449591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -100.144535 kcal Electronic energy + Delta-G solvation = -26754.659039 eV Core-core repulsion = 22796.397163 eV Total energy + Delta-G solvation = -3958.261876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17353 -40.38491 -39.05861 -37.40210 -36.43897 -36.05893 -34.34668 -33.87462 -32.04510 -31.04230 -29.58605 -28.15537 -26.95809 -26.64355 -24.35665 -23.67716 -22.50249 -21.34062 -20.09769 -19.08352 -18.30831 -17.90128 -17.79228 -17.12436 -16.87629 -16.60887 -16.43316 -16.31656 -15.88240 -15.65716 -15.15875 -14.79366 -14.53222 -14.36095 -14.29099 -14.16426 -14.04839 -13.83008 -13.54471 -13.22904 -13.07016 -12.93737 -12.80318 -12.70434 -12.50560 -12.40446 -12.22298 -12.08325 -11.96042 -11.71901 -11.64701 -11.47965 -10.91890 -10.79652 -10.70770 -9.93751 -9.80999 -9.50861 -9.29007 -8.28371 -6.45216 0.15955 0.35453 1.18917 1.43442 1.45992 1.57227 1.81527 2.29130 2.47892 2.66603 3.06339 3.12802 3.51576 3.79383 3.90529 3.92933 3.97856 4.03513 4.05850 4.32499 4.33766 4.38971 4.43048 4.46249 4.60967 4.66462 4.74310 4.83394 4.89990 4.98817 5.07870 5.12663 5.20232 5.25433 5.29260 5.29604 5.33153 5.49996 5.66397 5.70461 5.85852 5.86790 6.06374 6.36393 6.66189 6.87066 6.96092 7.24423 7.54193 8.83811 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032030 B = 0.001768 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.966409 B =15835.839122 C =15910.937056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.125 3.875 3 C 0.042 3.958 4 O -0.583 6.583 5 C -0.063 4.063 6 C -0.070 4.070 7 C -0.104 4.104 8 C -0.115 4.115 9 C -0.050 4.050 10 Cl -0.079 7.079 11 C -0.113 4.113 12 C -0.103 4.103 13 N -0.669 5.669 14 C 0.056 3.944 15 C 0.493 3.507 16 O -0.592 6.592 17 N -0.709 5.709 18 C 0.267 3.733 19 C -0.556 4.556 20 H 0.085 0.915 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.986 3.014 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.255 1.255 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.395 0.605 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.348 0.652 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.408 0.592 43 H -0.015 1.015 44 H -0.014 1.014 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 12.424 28.573 32.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.034 3.966 3 C -0.038 4.038 4 O -0.391 6.391 5 C -0.101 4.101 6 C -0.070 4.070 7 C -0.122 4.122 8 C -0.133 4.133 9 C -0.076 4.076 10 Cl -0.050 7.050 11 C -0.132 4.132 12 C -0.121 4.121 13 N -0.301 5.301 14 C -0.076 4.076 15 C 0.280 3.720 16 O -0.473 6.473 17 N -0.360 5.360 18 C 0.144 3.856 19 C -0.594 4.594 20 H 0.103 0.897 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.809 3.191 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.178 1.178 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.244 0.756 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.139 0.861 41 H 0.096 0.904 42 H 0.243 0.757 43 H 0.003 0.997 44 H 0.004 0.996 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.376 10.569 28.653 31.418 hybrid contribution 0.569 1.631 -0.913 1.954 sum -6.807 12.200 27.740 31.059 Atomic orbital electron populations 1.21989 0.92001 1.03409 1.02909 1.20995 0.96019 0.90279 0.89342 1.23031 0.81651 0.98078 1.01007 1.86421 1.20057 1.35500 1.97160 1.20467 1.01096 0.98911 0.89647 1.19897 0.94812 0.96090 0.96234 1.21200 1.00479 0.95446 0.95046 1.21212 0.94816 1.01042 0.96279 1.21099 0.96833 0.98001 0.91694 1.98372 1.88725 1.78470 1.39412 1.21236 1.00613 0.95055 0.96296 1.21252 0.95668 1.00119 0.95030 1.60323 1.17691 1.52272 0.99794 1.21790 1.02564 0.96084 0.87177 1.21439 0.80227 0.84781 0.85535 1.90639 1.40575 1.29076 1.86986 1.46166 1.52551 1.31706 1.05586 1.18507 0.92599 0.91333 0.83133 1.21630 1.33375 1.13696 0.90694 0.89729 1.26087 0.94691 0.95481 1.03447 1.70143 1.36870 1.23731 1.26208 0.85143 0.79226 0.77819 0.76936 1.19618 1.21021 1.17845 0.90360 0.91793 0.91254 0.93126 0.91582 0.75560 0.90942 0.90205 0.84291 0.83989 0.83756 0.83707 0.83299 0.86105 0.90419 0.75686 0.99670 0.99649 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 7.65 71.98 0.55 -1.65 16 2 C 0.12 2.24 0.56 3.52 0.00 2.24 16 3 C 0.04 0.63 4.96 71.98 0.36 0.98 16 4 O -0.58 -9.56 12.52 -148.98 -1.86 -11.43 16 5 C -0.06 -1.09 4.61 29.85 0.14 -0.95 16 6 C -0.07 -0.99 4.03 -19.86 -0.08 -1.07 16 7 C -0.10 -1.37 7.75 22.26 0.17 -1.20 16 8 C -0.11 -1.48 9.83 22.29 0.22 -1.26 16 9 C -0.05 -0.69 6.32 22.32 0.14 -0.55 16 10 Cl -0.08 -1.09 28.96 -2.72 -0.08 -1.17 16 11 C -0.11 -1.43 9.83 22.29 0.22 -1.21 16 12 C -0.10 -1.30 7.88 22.26 0.18 -1.12 16 13 N -0.67 -17.51 5.67 -474.15 -2.69 -20.19 16 14 C 0.06 1.48 5.38 85.56 0.46 1.94 16 15 C 0.49 19.84 7.87 87.66 0.69 20.53 16 16 O -0.59 -29.96 16.20 -3.04 -0.05 -30.01 16 17 N -0.71 -29.97 5.55 -466.81 -2.59 -32.56 16 18 C 0.27 14.83 5.43 85.63 0.46 15.29 16 19 C -0.56 -30.30 9.28 25.60 0.24 -30.07 16 20 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 21 C 0.00 0.14 5.46 84.65 0.46 0.60 16 22 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 23 Si 0.99 42.21 29.54 68.60 2.03 44.24 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 27 H 0.08 0.96 6.18 -2.38 -0.01 0.94 16 28 H 0.06 0.91 6.40 -2.39 -0.02 0.90 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.73 6.68 -2.38 -0.02 0.71 16 31 H 0.07 0.83 5.82 -2.39 -0.01 0.82 16 32 H 0.39 3.37 9.12 -74.05 -0.68 2.70 16 33 H 0.07 1.42 7.77 -2.39 -0.02 1.40 16 34 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 35 H 0.14 1.67 8.01 -2.91 -0.02 1.64 16 36 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.15 1.47 8.03 -2.91 -0.02 1.45 16 39 H 0.35 10.60 7.82 -89.69 -0.70 9.90 16 40 H 0.12 2.66 6.30 -2.39 -0.02 2.64 16 41 H 0.08 1.74 6.42 -2.39 -0.02 1.73 16 42 H 0.41 13.98 8.32 -92.70 -0.77 13.21 16 43 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -74.21 381.26 -1.85 -76.06 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -1.10 Total: 28.76 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 4.21 Total: 2.50 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.99 Total: -108.95 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.91 Total: -41.44 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -74.21 -1.85 -76.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933449591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.085 kcal (2) G-P(sol) polarization free energy of solvation -74.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds