Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 O 1.42906 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46773 * 240.00285 * 2 1 3 6 6 C 1.50692 * 109.47453 * 59.99951 * 5 2 1 7 7 C 1.38241 * 119.98850 * 269.73102 * 6 5 2 8 8 C 1.38217 * 120.01369 * 179.72765 * 7 6 5 9 9 C 1.38352 * 119.98664 * 0.53699 * 8 7 6 10 10 Cl 1.73599 * 120.01134 * 179.70503 * 9 8 7 11 11 C 1.38354 * 119.96959 * 359.73406 * 9 8 7 12 12 C 1.38210 * 119.98933 * 359.97438 * 11 9 8 13 13 N 1.46895 * 109.47406 * 120.00432 * 2 1 3 14 14 C 1.46906 * 110.99789 * 299.99534 * 13 2 1 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 2 16 16 O 1.21282 * 120.00082 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99978 * 180.02562 * 15 14 13 18 18 C 1.46496 * 119.99846 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.46919 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99838 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99810 * 180.02562 * 19 18 17 22 22 N 1.31508 * 120.00245 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99747 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47494 * 89.99947 * 23 21 19 25 25 H 1.48508 * 109.46676 * 209.99921 * 23 21 19 26 26 H 1.48502 * 109.46977 * 329.99219 * 23 21 19 27 27 H 1.09007 * 109.46476 * 300.00168 * 1 2 3 28 28 H 1.08992 * 109.47092 * 59.99731 * 1 2 3 29 29 H 1.08993 * 109.47354 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47133 * 300.00442 * 3 2 1 31 31 H 1.08997 * 109.46976 * 60.00444 * 3 2 1 32 32 H 0.96697 * 114.00059 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.47219 * 180.02562 * 5 2 1 34 34 H 1.09005 * 109.47157 * 299.99911 * 5 2 1 35 35 H 1.08004 * 119.99234 * 359.97438 * 7 6 5 36 36 H 1.08001 * 120.00526 * 180.27185 * 8 7 6 37 37 H 1.08002 * 120.00190 * 179.97438 * 11 9 8 38 38 H 1.07996 * 119.99062 * 179.97438 * 12 11 9 39 39 H 1.00902 * 111.00273 * 63.95056 * 13 2 1 40 40 H 1.08992 * 109.47459 * 299.99826 * 14 13 2 41 41 H 1.09004 * 109.47040 * 59.99976 * 14 13 2 42 42 H 0.97002 * 119.99767 * 359.97438 * 17 15 14 43 43 H 1.08998 * 109.47703 * 299.99475 * 18 17 15 44 44 H 1.09001 * 109.47464 * 60.00214 * 18 17 15 45 45 H 0.97006 * 120.00459 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 2.0400 -0.7212 -1.2493 6 6 1.5376 -0.0108 -2.4797 7 6 0.3323 -0.3801 -3.0471 8 6 -0.1316 0.2749 -4.1723 9 6 0.6158 1.2928 -4.7374 10 17 0.0374 2.1107 -6.1551 11 6 1.8247 1.6581 -4.1723 12 6 2.2847 1.0065 -3.0436 13 7 2.0197 -0.6925 1.1993 14 6 1.5488 -0.0264 2.4210 15 6 2.0695 -0.7638 3.6278 16 8 2.7640 -1.7476 3.4843 17 7 1.7624 -0.3305 4.8666 18 6 2.2690 -1.0470 6.0396 19 6 1.7858 -0.3637 7.2930 20 1 1.1632 0.5159 7.2226 21 6 2.1385 -0.8617 8.5293 22 7 2.8961 -1.9331 8.6150 23 14 1.5389 -0.0151 10.0828 24 1 0.2376 -0.5999 10.4945 25 1 2.5342 -0.2091 11.1678 26 1 1.3687 1.4367 9.8211 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.8625 2.3258 -0.0002 33 1 3.1300 -0.7217 -1.2492 34 1 1.6766 -1.7489 -1.2494 35 1 -0.2489 -1.1779 -2.6087 36 1 -1.0754 -0.0108 -4.6129 37 1 2.4088 2.4524 -4.6132 38 1 3.2285 1.2914 -2.6027 39 1 1.7503 -1.6649 1.1908 40 1 1.9123 1.0010 2.4379 41 1 0.4589 -0.0265 2.4379 42 1 1.2066 0.4561 4.9813 43 1 1.9059 -2.0746 6.0227 44 1 3.3589 -1.0465 6.0231 45 1 3.1446 -2.2833 9.4849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933449592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -71.714544 kcal Electronic energy + Delta-G solvation = -26743.325606 eV Core-core repulsion = 22786.296547 eV Total energy + Delta-G solvation = -3957.029059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40444 -39.04580 -38.02705 -36.78507 -35.64351 -34.14881 -33.03105 -32.29234 -31.47952 -30.14850 -27.85898 -27.16097 -26.35555 -25.37009 -23.12469 -22.52007 -21.73204 -19.67753 -19.38682 -17.53098 -17.43310 -17.30187 -16.20774 -16.01609 -15.85910 -15.47433 -15.13442 -14.95404 -14.70061 -14.17309 -14.05000 -13.90940 -13.70791 -13.64017 -13.47154 -13.27061 -12.63962 -12.58306 -12.43866 -12.06860 -11.97614 -11.93908 -11.77064 -11.50902 -11.34197 -11.29723 -11.14706 -10.97577 -10.87359 -10.77744 -10.31812 -10.06535 -9.39231 -9.38142 -9.04048 -8.85526 -8.72970 -8.30464 -7.84617 -6.16302 -4.23297 0.75150 0.91014 1.76469 3.20747 3.23668 3.29777 3.32177 3.41870 3.71497 4.08891 4.27824 4.38115 4.44062 4.51206 4.58873 4.68469 4.75317 4.95379 4.99592 5.11143 5.19555 5.21709 5.24350 5.28490 5.31852 5.43635 5.47871 5.52128 5.65284 5.66340 5.68588 5.84024 5.85079 5.87751 5.99258 6.28176 6.44917 6.95012 7.32922 7.39369 7.46959 7.53724 7.58139 7.68161 7.97969 8.65225 8.79771 9.14366 9.43523 10.93850 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.001767 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.732632 B =15845.482191 C =15918.535836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.124 3.876 3 C 0.085 3.915 4 O -0.549 6.549 5 C -0.069 4.069 6 C -0.065 4.065 7 C -0.105 4.105 8 C -0.111 4.111 9 C -0.041 4.041 10 Cl -0.077 7.077 11 C -0.112 4.112 12 C -0.099 4.099 13 N -0.648 5.648 14 C 0.037 3.963 15 C 0.497 3.503 16 O -0.542 6.542 17 N -0.716 5.716 18 C 0.251 3.749 19 C -0.544 4.544 20 H 0.062 0.938 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.371 0.629 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.350 0.650 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.389 0.611 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 9.190 -27.924 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.033 3.967 3 C 0.007 3.993 4 O -0.353 6.353 5 C -0.107 4.107 6 C -0.066 4.066 7 C -0.123 4.123 8 C -0.130 4.130 9 C -0.067 4.067 10 Cl -0.049 7.049 11 C -0.130 4.130 12 C -0.117 4.117 13 N -0.280 5.280 14 C -0.095 4.095 15 C 0.281 3.719 16 O -0.420 6.420 17 N -0.365 5.365 18 C 0.130 3.870 19 C -0.582 4.582 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.217 0.783 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.221 0.779 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.663 8.064 -27.972 29.657 hybrid contribution -1.612 1.286 0.872 2.239 sum -7.275 9.350 -27.100 29.577 Atomic orbital electron populations 1.22661 0.96461 1.02935 1.02923 1.20838 0.91701 0.93484 0.90721 1.22253 0.82230 0.95454 0.99410 1.86634 1.18528 1.32626 1.97495 1.20567 1.03028 0.97915 0.89156 1.19983 0.94232 0.95931 0.96460 1.21099 0.95931 0.99978 0.95265 1.21041 1.00100 0.95388 0.96477 1.20940 0.96509 0.97691 0.91580 1.98372 1.88716 1.78463 1.39300 1.21081 0.94753 1.00764 0.96450 1.21185 1.00383 0.95377 0.94804 1.60145 1.62920 1.06155 0.98817 1.21919 0.98078 0.99679 0.89834 1.20333 0.81588 0.85412 0.84529 1.90666 1.38163 1.26932 1.86239 1.46436 1.52155 1.31448 1.06442 1.19079 0.95139 0.92364 0.80404 1.21231 1.33169 1.13206 0.90587 0.91951 1.24955 0.94825 0.94963 0.99298 1.69974 1.35291 1.21843 1.25105 0.86418 0.78513 0.79699 0.82280 1.20499 1.20989 1.19781 0.91864 0.91415 0.91644 0.93334 0.93793 0.78291 0.88565 0.90711 0.85086 0.85099 0.85084 0.84443 0.82960 0.88645 0.92794 0.77919 0.95644 0.95537 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 7.65 37.16 0.28 -1.28 16 2 C 0.12 1.21 0.52 -131.60 -0.07 1.14 16 3 C 0.08 0.77 4.98 37.16 0.18 0.96 16 4 O -0.55 -5.53 12.42 -35.23 -0.44 -5.96 16 5 C -0.07 -0.63 4.57 -27.88 -0.13 -0.75 16 6 C -0.07 -0.52 4.00 -104.62 -0.42 -0.94 16 7 C -0.10 -0.75 7.90 -39.59 -0.31 -1.07 16 8 C -0.11 -0.81 9.83 -39.55 -0.39 -1.20 16 9 C -0.04 -0.32 6.32 -39.50 -0.25 -0.57 16 10 Cl -0.08 -0.60 28.96 -51.86 -1.50 -2.10 16 11 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 12 C -0.10 -0.76 7.88 -39.59 -0.31 -1.07 16 13 N -0.65 -8.61 5.58 -101.21 -0.56 -9.18 16 14 C 0.04 0.52 5.38 -4.97 -0.03 0.49 16 15 C 0.50 9.87 7.87 -10.98 -0.09 9.78 16 16 O -0.54 -13.14 16.20 5.56 0.09 -13.05 16 17 N -0.72 -14.98 5.55 -61.47 -0.34 -15.32 16 18 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 19 C -0.54 -14.76 9.28 -34.44 -0.32 -15.07 16 20 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.88 -26.13 13.29 55.43 0.74 -25.39 16 23 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.06 0.53 6.40 -51.92 -0.33 0.20 16 28 H 0.07 0.50 6.19 -51.93 -0.32 0.18 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.38 6.17 -51.93 -0.32 0.06 16 31 H 0.04 0.40 6.40 -51.93 -0.33 0.07 16 32 H 0.37 2.23 9.12 45.56 0.42 2.64 16 33 H 0.10 1.04 7.63 -51.92 -0.40 0.64 16 34 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.13 0.77 8.04 -52.48 -0.42 0.35 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.14 0.98 7.59 -52.49 -0.40 0.58 16 39 H 0.35 4.83 8.42 -39.29 -0.33 4.50 16 40 H 0.10 1.23 6.30 -51.93 -0.33 0.90 16 41 H 0.05 0.64 6.30 -51.93 -0.33 0.31 16 42 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 381.17 15.07 5.74 5.74 Total: -1.00 -33.65 381.17 -9.15 -42.80 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.50 Total: 9.17 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.36 Total: -2.50 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.17 Total: -49.89 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.35 Total: -19.01 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.65 -9.15 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933449592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.915 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds