Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 O 1.42906 * 109.47132 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46773 * 240.00285 * 2 1 3 6 6 C 1.50692 * 109.47453 * 59.99951 * 5 2 1 7 7 C 1.38241 * 119.98850 * 269.73102 * 6 5 2 8 8 C 1.38217 * 120.01369 * 179.72765 * 7 6 5 9 9 C 1.38352 * 119.98664 * 0.53699 * 8 7 6 10 10 Cl 1.73599 * 120.01134 * 179.70503 * 9 8 7 11 11 C 1.38354 * 119.96959 * 359.73406 * 9 8 7 12 12 C 1.38210 * 119.98933 * 359.97438 * 11 9 8 13 13 N 1.46895 * 109.47406 * 120.00432 * 2 1 3 14 14 C 1.46906 * 110.99789 * 299.99534 * 13 2 1 15 15 C 1.50703 * 109.47109 * 179.97438 * 14 13 2 16 16 O 1.21282 * 120.00082 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99978 * 180.02562 * 15 14 13 18 18 C 1.46496 * 119.99846 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.46919 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99838 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99810 * 180.02562 * 19 18 17 22 22 N 1.31508 * 120.00245 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99747 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47494 * 89.99947 * 23 21 19 25 25 H 1.48508 * 109.46676 * 209.99921 * 23 21 19 26 26 H 1.48502 * 109.46977 * 329.99219 * 23 21 19 27 27 H 1.09007 * 109.46476 * 300.00168 * 1 2 3 28 28 H 1.08992 * 109.47092 * 59.99731 * 1 2 3 29 29 H 1.08993 * 109.47354 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47133 * 300.00442 * 3 2 1 31 31 H 1.08997 * 109.46976 * 60.00444 * 3 2 1 32 32 H 0.96697 * 114.00059 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.47219 * 180.02562 * 5 2 1 34 34 H 1.09005 * 109.47157 * 299.99911 * 5 2 1 35 35 H 1.08004 * 119.99234 * 359.97438 * 7 6 5 36 36 H 1.08001 * 120.00526 * 180.27185 * 8 7 6 37 37 H 1.08002 * 120.00190 * 179.97438 * 11 9 8 38 38 H 1.07996 * 119.99062 * 179.97438 * 12 11 9 39 39 H 1.00902 * 111.00273 * 63.95056 * 13 2 1 40 40 H 1.08992 * 109.47459 * 299.99826 * 14 13 2 41 41 H 1.09004 * 109.47040 * 59.99976 * 14 13 2 42 42 H 0.97002 * 119.99767 * 359.97438 * 17 15 14 43 43 H 1.08998 * 109.47703 * 299.99475 * 18 17 15 44 44 H 1.09001 * 109.47464 * 60.00214 * 18 17 15 45 45 H 0.97006 * 120.00459 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 2.0400 -0.7212 -1.2493 6 6 1.5376 -0.0108 -2.4797 7 6 0.3323 -0.3801 -3.0471 8 6 -0.1316 0.2749 -4.1723 9 6 0.6158 1.2928 -4.7374 10 17 0.0374 2.1107 -6.1551 11 6 1.8247 1.6581 -4.1723 12 6 2.2847 1.0065 -3.0436 13 7 2.0197 -0.6925 1.1993 14 6 1.5488 -0.0264 2.4210 15 6 2.0695 -0.7638 3.6278 16 8 2.7640 -1.7476 3.4843 17 7 1.7624 -0.3305 4.8666 18 6 2.2690 -1.0470 6.0396 19 6 1.7858 -0.3637 7.2930 20 1 1.1632 0.5159 7.2226 21 6 2.1385 -0.8617 8.5293 22 7 2.8961 -1.9331 8.6150 23 14 1.5389 -0.0151 10.0828 24 1 0.2376 -0.5999 10.4945 25 1 2.5342 -0.2091 11.1678 26 1 1.3687 1.4367 9.8211 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.8625 2.3258 -0.0002 33 1 3.1300 -0.7217 -1.2492 34 1 1.6766 -1.7489 -1.2494 35 1 -0.2489 -1.1779 -2.6087 36 1 -1.0754 -0.0108 -4.6129 37 1 2.4088 2.4524 -4.6132 38 1 3.2285 1.2914 -2.6027 39 1 1.7503 -1.6649 1.1908 40 1 1.9123 1.0010 2.4379 41 1 0.4589 -0.0265 2.4379 42 1 1.2066 0.4561 4.9813 43 1 1.9059 -2.0746 6.0227 44 1 3.3589 -1.0465 6.0231 45 1 3.1446 -2.2833 9.4849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933449592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -97.565217 kcal Electronic energy + Delta-G solvation = -26744.446575 eV Core-core repulsion = 22786.296547 eV Total energy + Delta-G solvation = -3958.150028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14524 -40.38155 -38.99284 -37.38323 -36.48162 -36.05672 -34.34518 -33.84530 -32.02960 -31.02784 -29.53836 -28.04459 -27.08686 -26.64660 -24.36015 -23.67538 -22.50364 -21.34185 -20.17010 -19.08023 -18.16434 -17.92892 -17.77712 -17.19175 -16.78296 -16.60509 -16.37912 -16.27035 -15.87076 -15.45072 -14.92738 -14.74404 -14.65046 -14.41075 -14.28742 -14.14149 -14.11985 -13.87693 -13.78832 -13.30440 -13.10021 -12.90579 -12.73888 -12.62606 -12.55879 -12.39812 -12.22381 -12.05391 -12.02609 -11.71346 -11.48934 -11.47532 -10.80242 -10.79612 -10.66726 -9.93487 -9.80760 -9.49206 -9.25415 -8.28410 -6.45232 0.16546 0.36101 1.19127 1.43411 1.45941 1.57138 1.81704 2.29103 2.47984 2.67119 3.06336 3.20370 3.46199 3.80273 3.91250 3.94575 3.98786 4.03750 4.06899 4.31272 4.35617 4.41395 4.43370 4.48811 4.62016 4.67693 4.72017 4.77376 4.90235 4.91995 5.07926 5.12578 5.18039 5.25400 5.28244 5.29924 5.31449 5.50002 5.67883 5.70567 5.85860 5.87846 6.06488 6.37392 6.66211 6.96341 7.04945 7.24443 7.54457 8.83739 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031966 B = 0.001767 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.732632 B =15845.482191 C =15918.535836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.124 3.876 3 C 0.084 3.916 4 O -0.571 6.571 5 C -0.063 4.063 6 C -0.069 4.069 7 C -0.104 4.104 8 C -0.114 4.114 9 C -0.050 4.050 10 Cl -0.079 7.079 11 C -0.115 4.115 12 C -0.102 4.102 13 N -0.668 5.668 14 C 0.057 3.943 15 C 0.493 3.507 16 O -0.591 6.591 17 N -0.710 5.710 18 C 0.267 3.733 19 C -0.556 4.556 20 H 0.085 0.915 21 C 0.003 3.997 22 N -0.931 5.931 23 Si 0.986 3.014 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.255 1.255 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.387 0.613 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.344 0.656 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.408 0.592 43 H -0.013 1.013 44 H -0.016 1.016 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 11.365 -28.476 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.033 3.967 3 C 0.006 3.994 4 O -0.378 6.378 5 C -0.100 4.100 6 C -0.070 4.070 7 C -0.122 4.122 8 C -0.133 4.133 9 C -0.076 4.076 10 Cl -0.050 7.050 11 C -0.134 4.134 12 C -0.120 4.120 13 N -0.301 5.301 14 C -0.075 4.075 15 C 0.280 3.720 16 O -0.472 6.472 17 N -0.360 5.360 18 C 0.144 3.856 19 C -0.594 4.594 20 H 0.103 0.897 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.809 3.191 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.179 1.179 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.235 0.765 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.243 0.757 43 H 0.005 0.995 44 H 0.002 0.998 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.691 10.300 -28.568 31.327 hybrid contribution -0.933 0.575 0.935 1.440 sum -8.624 10.875 -27.634 30.923 Atomic orbital electron populations 1.22607 0.94869 1.03427 1.03574 1.20950 0.92882 0.93605 0.89224 1.22308 0.81873 0.94972 1.00232 1.86600 1.19222 1.34385 1.97562 1.20446 1.01691 0.98278 0.89609 1.19898 0.94739 0.96166 0.96211 1.21239 0.95684 1.00125 0.95128 1.21230 1.00583 0.95080 0.96395 1.21097 0.96832 0.98015 0.91694 1.98371 1.88722 1.78515 1.39394 1.21219 0.94803 1.01010 0.96330 1.21230 1.00469 0.95394 0.94939 1.60138 1.64065 1.06149 0.99705 1.21789 0.99504 0.99129 0.87109 1.21442 0.80227 0.84800 0.85521 1.90641 1.40275 1.29330 1.86971 1.46171 1.52480 1.31791 1.05599 1.18505 0.92580 0.91341 0.83139 1.21632 1.33271 1.13793 0.90700 0.89732 1.26084 0.94668 0.95505 1.03445 1.70142 1.36822 1.23778 1.26206 0.85147 0.77865 0.79184 0.76946 1.19576 1.21045 1.17874 0.91601 0.90291 0.91291 0.91857 0.93466 0.76456 0.90659 0.90475 0.83701 0.83792 0.84011 0.84280 0.83645 0.86849 0.89678 0.75690 0.99531 0.99794 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 7.65 71.98 0.55 -2.00 16 2 C 0.12 2.20 0.52 3.53 0.00 2.20 16 3 C 0.08 1.36 4.98 71.98 0.36 1.72 16 4 O -0.57 -10.80 12.42 -148.98 -1.85 -12.65 16 5 C -0.06 -1.07 4.57 29.85 0.14 -0.94 16 6 C -0.07 -0.99 4.00 -19.87 -0.08 -1.07 16 7 C -0.10 -1.28 7.90 22.27 0.18 -1.10 16 8 C -0.11 -1.44 9.83 22.29 0.22 -1.22 16 9 C -0.05 -0.70 6.32 22.32 0.14 -0.56 16 10 Cl -0.08 -1.10 28.96 -2.72 -0.08 -1.18 16 11 C -0.12 -1.53 9.83 22.29 0.22 -1.31 16 12 C -0.10 -1.41 7.88 22.26 0.18 -1.24 16 13 N -0.67 -17.17 5.58 -474.13 -2.65 -19.82 16 14 C 0.06 1.48 5.38 85.56 0.46 1.94 16 15 C 0.49 19.67 7.87 87.66 0.69 20.36 16 16 O -0.59 -29.75 16.20 -3.04 -0.05 -29.79 16 17 N -0.71 -29.83 5.55 -466.79 -2.59 -32.42 16 18 C 0.27 14.80 5.43 85.64 0.46 15.26 16 19 C -0.56 -30.26 9.28 25.60 0.24 -30.02 16 20 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 21 C 0.00 0.14 5.46 84.66 0.46 0.60 16 22 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 23 Si 0.99 42.17 29.54 68.60 2.03 44.20 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 27 H 0.07 0.88 6.40 -2.38 -0.02 0.86 16 28 H 0.08 0.93 6.19 -2.39 -0.01 0.91 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.84 6.17 -2.39 -0.01 0.82 16 31 H 0.05 0.72 6.40 -2.39 -0.02 0.71 16 32 H 0.39 4.13 9.12 -74.06 -0.68 3.45 16 33 H 0.07 1.62 7.63 -2.38 -0.02 1.60 16 34 H 0.08 1.25 8.08 -2.38 -0.02 1.24 16 35 H 0.15 1.35 8.04 -2.91 -0.02 1.32 16 36 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.14 1.85 7.59 -2.91 -0.02 1.82 16 39 H 0.34 9.44 8.42 -89.69 -0.76 8.68 16 40 H 0.11 2.62 6.30 -2.39 -0.02 2.61 16 41 H 0.09 1.75 6.30 -2.38 -0.02 1.73 16 42 H 0.41 13.90 8.32 -92.71 -0.77 13.13 16 43 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 44 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H 0.27 15.18 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -75.35 381.17 -1.84 -77.19 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -1.15 Total: 27.99 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.21 Total: 2.63 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -4.95 Total: -108.39 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.90 Total: -42.45 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -75.35 -1.84 -77.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933449592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.374 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds