Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35781 * 117.00314 * 2 1 4 4 C 1.38026 * 123.47206 * 0.19259 * 3 2 1 5 5 C 1.33608 * 115.08894 * 180.27729 * 4 3 2 6 6 C 1.50692 * 124.42910 * 179.74951 * 5 4 3 7 7 S 1.70577 * 111.14597 * 359.74833 * 5 4 3 8 8 C 1.37267 * 123.47607 * 179.97438 * 3 2 1 9 9 C 1.41727 * 125.46941 * 0.02562 * 8 3 2 10 10 O 1.21773 * 120.00398 * 359.70948 * 9 8 3 11 11 N 1.34781 * 119.99767 * 179.71778 * 9 8 3 12 12 C 1.46503 * 119.99750 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46705 * 179.97438 * 12 11 9 14 14 H 1.09005 * 110.91711 * 308.90322 * 13 12 11 15 15 C 1.54909 * 111.00548 * 72.80280 * 13 12 11 16 16 N 1.47422 * 104.83564 * 155.08009 * 15 13 12 17 17 C 1.36932 * 125.65252 * 155.90449 * 16 15 13 18 18 H 1.07997 * 119.99895 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00070 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47138 * 89.99881 * 21 19 17 23 23 H 1.48506 * 109.47193 * 210.00082 * 21 19 17 24 24 H 1.48498 * 109.47139 * 329.99931 * 21 19 17 25 25 C 1.47027 * 108.69865 * 335.87617 * 16 15 13 26 26 C 1.54314 * 107.27289 * 1.05634 * 25 16 15 27 27 H 1.09004 * 110.87338 * 140.63007 * 26 25 16 28 28 O 1.42903 * 110.72054 * 263.82722 * 26 25 16 29 29 H 1.08998 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46887 * 300.00419 * 1 2 3 31 31 H 1.08999 * 109.46757 * 60.00227 * 1 2 3 32 32 H 1.08001 * 122.45380 * 0.02921 * 4 3 2 33 33 H 1.09006 * 109.47129 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47139 * 299.97199 * 6 5 4 35 35 H 1.08997 * 109.47501 * 59.97642 * 6 5 4 36 36 H 0.97001 * 120.00080 * 359.97438 * 11 9 8 37 37 H 1.08990 * 109.47150 * 60.00038 * 12 11 9 38 38 H 1.08999 * 109.47122 * 299.99279 * 12 11 9 39 39 H 1.09002 * 110.37204 * 273.92512 * 15 13 12 40 40 H 1.09001 * 110.36536 * 36.24446 * 15 13 12 41 41 H 0.97001 * 120.00218 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.87825 * 241.63649 * 25 16 15 43 43 H 1.09001 * 109.88209 * 120.47703 * 25 16 15 44 44 H 0.96700 * 114.00311 * 293.52656 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4108 0.0039 5 6 2.1390 3.5001 -0.0026 6 6 1.6190 4.9144 -0.0055 7 16 3.7924 3.0805 -0.0072 8 6 3.4094 1.3645 0.0005 9 6 4.3567 0.3103 0.0006 10 8 3.9793 -0.8474 0.0055 11 7 5.6753 0.5893 -0.0046 12 6 6.6545 -0.5004 -0.0040 13 6 8.0684 0.0845 -0.0112 14 1 8.1807 0.8211 -0.8068 15 6 8.4229 0.6971 1.3667 16 7 9.8949 0.6499 1.4333 17 6 10.6854 1.4610 2.2028 18 1 10.2352 2.2148 2.8316 19 6 12.0655 1.3145 2.1746 20 7 12.6142 0.3962 1.4079 21 14 13.1438 2.4205 3.2250 22 1 13.3529 1.7910 4.5536 23 1 14.4557 2.6127 2.5562 24 1 12.4800 3.7373 3.4002 25 6 10.3735 -0.4127 0.5369 26 6 9.1334 -1.0367 -0.1370 27 1 9.3332 -1.2631 -1.1844 28 8 8.7158 -2.2114 0.5614 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2867 2.4660 0.0076 33 1 2.4582 5.6101 -0.0105 34 1 1.0085 5.0753 -0.8941 35 1 1.0143 5.0811 0.8858 36 1 5.9760 1.5115 -0.0088 37 1 6.5123 -1.1172 -0.8913 38 1 6.5181 -1.1109 0.8886 39 1 8.0733 1.7278 1.4250 40 1 7.9877 0.1021 2.1696 41 1 13.5786 0.2935 1.3885 42 1 10.9042 -1.1716 1.1120 43 1 11.0335 0.0104 -0.2203 44 1 9.3468 -2.9426 0.5138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958451986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = -59.530181 kcal Electronic energy + Delta-G solvation = -27135.816516 eV Core-core repulsion = 23181.359517 eV Total energy + Delta-G solvation = -3954.456999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41570 -39.17290 -38.10734 -36.60813 -34.82087 -34.44907 -32.38056 -31.90661 -29.77799 -28.33560 -27.80231 -26.96756 -25.25577 -23.68018 -23.25115 -21.35247 -20.26267 -19.97609 -19.29078 -18.40423 -17.32452 -17.12830 -16.45600 -16.16220 -16.10546 -15.19835 -14.94901 -14.81609 -14.59001 -14.26366 -14.19526 -13.97231 -13.66810 -13.58909 -13.25136 -12.99204 -12.71351 -12.54922 -12.45668 -12.39772 -11.80460 -11.74747 -11.35715 -11.19862 -11.16459 -11.13940 -10.79573 -10.60874 -10.42299 -10.06219 -10.01232 -9.78601 -9.65417 -9.13492 -9.01633 -8.70710 -8.64156 -8.24792 -6.83980 -5.72572 -3.05309 0.28591 1.19161 1.52598 2.11280 3.24149 3.39933 3.42345 3.44822 3.46279 3.46707 4.21258 4.48376 4.72080 4.75482 4.79826 4.81493 4.87923 5.04904 5.08111 5.17848 5.22555 5.32968 5.39738 5.47151 5.51645 5.54985 5.58586 5.65384 5.88186 5.97388 6.14479 6.16474 6.45084 6.46860 6.57501 6.72655 6.95018 7.03573 7.41975 7.50953 7.70573 7.76189 8.23050 8.28441 8.44721 9.20464 9.81172 10.47294 11.39557 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.002656 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.821020 B =10541.471880 C =11988.147037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.271 6.271 3 C 0.190 3.810 4 C -0.222 4.222 5 C -0.164 4.164 6 C -0.088 4.088 7 S 0.232 5.768 8 C -0.325 4.325 9 C 0.592 3.408 10 O -0.526 6.526 11 N -0.729 5.729 12 C 0.144 3.856 13 C -0.110 4.110 14 H 0.088 0.912 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.925 5.925 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.154 3.846 26 C 0.083 3.917 27 H 0.057 0.943 28 O -0.563 6.563 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.393 0.607 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.026 0.974 41 H 0.252 0.748 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.761 5.886 -6.434 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.182 6.182 3 C 0.130 3.870 4 C -0.255 4.255 5 C -0.285 4.285 6 C -0.147 4.147 7 S 0.497 5.503 8 C -0.445 4.445 9 C 0.379 3.621 10 O -0.405 6.405 11 N -0.381 5.381 12 C 0.021 3.979 13 C -0.130 4.130 14 H 0.106 0.894 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.028 3.972 26 C 0.023 3.977 27 H 0.075 0.925 28 O -0.369 6.369 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.227 0.773 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -22.863 6.062 -6.264 24.469 hybrid contribution -0.300 0.037 0.434 0.529 sum -23.164 6.099 -5.829 24.652 Atomic orbital electron populations 1.23170 0.78523 1.04364 1.01167 1.86349 1.20717 1.24130 1.87004 1.18206 0.90217 0.85312 0.93256 1.19907 1.01845 0.90672 1.13116 1.23972 0.99326 1.00517 1.04658 1.20458 1.01798 0.88854 1.03552 1.83150 1.02533 0.95668 1.68916 1.22769 0.95423 0.98103 1.28170 1.15515 0.81628 0.87673 0.77243 1.90866 1.79571 1.20075 1.49984 1.46014 1.05675 1.10326 1.76089 1.21141 0.85532 0.88339 1.02860 1.22684 0.92565 0.97252 1.00460 0.89360 1.21590 0.86456 0.97184 0.92925 1.44380 0.99404 1.38834 1.50331 1.19077 0.87801 1.10700 1.17741 0.90377 1.24792 0.96553 0.99216 1.00048 1.69931 1.09891 1.35454 1.42056 0.86097 0.80017 0.79877 0.79648 1.21627 1.21708 1.20688 1.21851 0.90818 0.91270 0.93216 1.23126 0.95381 0.84986 0.94220 0.92543 1.86418 1.48961 1.24270 1.77226 0.87885 0.92641 0.92675 0.83422 0.90775 0.89988 0.89947 0.77276 0.91724 0.90310 0.94551 0.95610 0.93772 0.93247 0.92961 0.77852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.94 101.05 1.00 1.19 16 2 O -0.27 -3.65 9.36 -36.57 -0.34 -4.00 16 3 C 0.19 2.44 6.70 -40.01 -0.27 2.17 16 4 C -0.22 -2.07 9.02 -41.28 -0.37 -2.44 16 5 C -0.16 -1.39 6.26 -35.93 -0.23 -1.61 16 6 C -0.09 -0.45 10.32 36.00 0.37 -0.08 16 7 S 0.23 2.31 21.92 -107.50 -2.36 -0.05 16 8 C -0.32 -4.52 6.28 -38.60 -0.24 -4.77 16 9 C 0.59 9.98 7.60 -14.93 -0.11 9.87 16 10 O -0.53 -10.78 15.84 -12.39 -0.20 -10.97 16 11 N -0.73 -11.26 5.49 -63.19 -0.35 -11.60 16 12 C 0.14 2.45 4.60 -4.04 -0.02 2.43 16 13 C -0.11 -1.96 2.98 -88.47 -0.26 -2.22 16 14 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 15 C 0.14 3.06 6.64 -2.53 -0.02 3.04 16 16 N -0.60 -15.45 3.39 -170.08 -0.58 -16.03 16 17 C -0.22 -6.28 10.28 -15.06 -0.15 -6.43 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.93 -26.99 10.31 55.49 0.57 -26.41 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.15 3.67 5.14 -3.07 -0.02 3.65 16 26 C 0.08 1.56 4.08 -24.90 -0.10 1.46 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.56 -10.23 12.24 -35.23 -0.43 -10.66 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.34 7.87 -51.93 -0.41 -0.07 16 31 H 0.05 0.33 7.89 -51.93 -0.41 -0.08 16 32 H 0.15 0.97 6.99 -52.49 -0.37 0.61 16 33 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.39 5.29 7.44 -40.82 -0.30 4.98 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.52 7.55 -51.93 -0.39 1.12 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.03 0.59 7.91 -51.93 -0.41 0.17 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.05 1.31 7.44 -51.93 -0.39 0.92 16 43 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 44 H 0.37 5.38 9.12 45.56 0.42 5.80 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -36.05 375.60 -9.13 -45.18 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.57 Total: 5.94 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.51 Total: 5.87 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.35 Total: -54.04 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.97 Total: -25.63 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.36 Total: -0.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.05 -9.13 -45.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958451986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.354 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds