Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35781 * 117.00314 * 2 1 4 4 C 1.38026 * 123.47206 * 0.19259 * 3 2 1 5 5 C 1.33608 * 115.08894 * 180.27729 * 4 3 2 6 6 C 1.50692 * 124.42910 * 179.74951 * 5 4 3 7 7 S 1.70577 * 111.14597 * 359.74833 * 5 4 3 8 8 C 1.37267 * 123.47607 * 179.97438 * 3 2 1 9 9 C 1.41727 * 125.46941 * 0.02562 * 8 3 2 10 10 O 1.21773 * 120.00398 * 359.70948 * 9 8 3 11 11 N 1.34781 * 119.99767 * 179.71778 * 9 8 3 12 12 C 1.46503 * 119.99750 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46705 * 179.97438 * 12 11 9 14 14 H 1.09005 * 110.91711 * 308.90322 * 13 12 11 15 15 C 1.54909 * 111.00548 * 72.80280 * 13 12 11 16 16 N 1.47422 * 104.83564 * 155.08009 * 15 13 12 17 17 C 1.36932 * 125.65252 * 155.90449 * 16 15 13 18 18 H 1.07997 * 119.99895 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00070 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99770 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47138 * 89.99881 * 21 19 17 23 23 H 1.48506 * 109.47193 * 210.00082 * 21 19 17 24 24 H 1.48498 * 109.47139 * 329.99931 * 21 19 17 25 25 C 1.47027 * 108.69865 * 335.87617 * 16 15 13 26 26 C 1.54314 * 107.27289 * 1.05634 * 25 16 15 27 27 H 1.09004 * 110.87338 * 140.63007 * 26 25 16 28 28 O 1.42903 * 110.72054 * 263.82722 * 26 25 16 29 29 H 1.08998 * 109.47239 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46887 * 300.00419 * 1 2 3 31 31 H 1.08999 * 109.46757 * 60.00227 * 1 2 3 32 32 H 1.08001 * 122.45380 * 0.02921 * 4 3 2 33 33 H 1.09006 * 109.47129 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47139 * 299.97199 * 6 5 4 35 35 H 1.08997 * 109.47501 * 59.97642 * 6 5 4 36 36 H 0.97001 * 120.00080 * 359.97438 * 11 9 8 37 37 H 1.08990 * 109.47150 * 60.00038 * 12 11 9 38 38 H 1.08999 * 109.47122 * 299.99279 * 12 11 9 39 39 H 1.09002 * 110.37204 * 273.92512 * 15 13 12 40 40 H 1.09001 * 110.36536 * 36.24446 * 15 13 12 41 41 H 0.97001 * 120.00218 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.87825 * 241.63649 * 25 16 15 43 43 H 1.09001 * 109.88209 * 120.47703 * 25 16 15 44 44 H 0.96700 * 114.00311 * 293.52656 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4108 0.0039 5 6 2.1390 3.5001 -0.0026 6 6 1.6190 4.9144 -0.0055 7 16 3.7924 3.0805 -0.0072 8 6 3.4094 1.3645 0.0005 9 6 4.3567 0.3103 0.0006 10 8 3.9793 -0.8474 0.0055 11 7 5.6753 0.5893 -0.0046 12 6 6.6545 -0.5004 -0.0040 13 6 8.0684 0.0845 -0.0112 14 1 8.1807 0.8211 -0.8068 15 6 8.4229 0.6971 1.3667 16 7 9.8949 0.6499 1.4333 17 6 10.6854 1.4610 2.2028 18 1 10.2352 2.2148 2.8316 19 6 12.0655 1.3145 2.1746 20 7 12.6142 0.3962 1.4079 21 14 13.1438 2.4205 3.2250 22 1 13.3529 1.7910 4.5536 23 1 14.4557 2.6127 2.5562 24 1 12.4800 3.7373 3.4002 25 6 10.3735 -0.4127 0.5369 26 6 9.1334 -1.0367 -0.1370 27 1 9.3332 -1.2631 -1.1844 28 8 8.7158 -2.2114 0.5614 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2867 2.4660 0.0076 33 1 2.4582 5.6101 -0.0105 34 1 1.0085 5.0753 -0.8941 35 1 1.0143 5.0811 0.8858 36 1 5.9760 1.5115 -0.0088 37 1 6.5123 -1.1172 -0.8913 38 1 6.5181 -1.1109 0.8886 39 1 8.0733 1.7278 1.4250 40 1 7.9877 0.1021 2.1696 41 1 13.5786 0.2935 1.3885 42 1 10.9042 -1.1716 1.1120 43 1 11.0335 0.0104 -0.2203 44 1 9.3468 -2.9426 0.5138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958451986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -86.771621 kcal Electronic energy + Delta-G solvation = -27136.997794 eV Core-core repulsion = 23181.359517 eV Total energy + Delta-G solvation = -3955.638277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39238 -40.43281 -39.62658 -37.36933 -36.41697 -36.01558 -33.98392 -32.94504 -31.40363 -29.60879 -28.88961 -28.03749 -26.94678 -25.11310 -24.10803 -22.60792 -21.96970 -21.41543 -20.31404 -19.44632 -19.06319 -18.28412 -17.82919 -17.26476 -16.99911 -16.80378 -16.33903 -16.18595 -15.76459 -15.53237 -15.32602 -14.96749 -14.88332 -14.69613 -14.49193 -14.38265 -14.23581 -13.57988 -13.53505 -13.15658 -13.12931 -13.08406 -13.00846 -12.66646 -12.43343 -12.34938 -12.10549 -11.92267 -11.87223 -11.80411 -11.76983 -11.57650 -11.02428 -10.78612 -10.72534 -10.18411 -9.67606 -9.07065 -8.91319 -7.85504 -5.20918 -0.54880 0.40382 0.76429 1.29123 1.46591 1.48666 1.57157 2.21531 2.26678 2.49312 2.49568 3.27315 3.36267 3.55399 3.57931 3.87871 3.91408 3.99620 4.04681 4.18153 4.25283 4.35451 4.37534 4.42131 4.56611 4.61147 4.66012 4.71597 4.75630 4.82913 4.89495 4.92958 4.98306 5.08398 5.23284 5.29679 5.40786 5.41953 5.53384 5.69791 6.17501 6.25879 6.51117 6.93703 7.09330 7.21705 7.75477 8.40556 9.24892 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.002656 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.821020 B =10541.471880 C =11988.147037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.308 6.308 3 C 0.191 3.809 4 C -0.232 4.232 5 C -0.141 4.141 6 C -0.091 4.091 7 S 0.249 5.751 8 C -0.380 4.380 9 C 0.590 3.410 10 O -0.576 6.576 11 N -0.722 5.722 12 C 0.160 3.840 13 C -0.093 4.093 14 H 0.109 0.891 15 C 0.143 3.857 16 N -0.624 5.624 17 C -0.242 4.242 18 H 0.083 0.917 19 C -0.066 4.066 20 N -0.952 5.952 21 Si 0.980 3.020 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.266 1.266 25 C 0.161 3.839 26 C 0.095 3.905 27 H 0.088 0.912 28 O -0.571 6.571 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.178 0.822 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.404 0.596 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.010 0.990 41 H 0.247 0.753 42 H 0.014 0.986 43 H 0.026 0.974 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.950 8.401 -6.873 28.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.220 6.220 3 C 0.130 3.870 4 C -0.264 4.264 5 C -0.262 4.262 6 C -0.149 4.149 7 S 0.515 5.485 8 C -0.499 4.499 9 C 0.381 3.619 10 O -0.459 6.459 11 N -0.375 5.375 12 C 0.036 3.964 13 C -0.113 4.113 14 H 0.127 0.873 15 C 0.018 3.982 16 N -0.350 5.350 17 C -0.371 4.371 18 H 0.101 0.899 19 C -0.259 4.259 20 N -0.601 5.601 21 Si 0.808 3.192 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.191 1.191 25 C 0.036 3.964 26 C 0.035 3.965 27 H 0.106 0.894 28 O -0.379 6.379 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.195 0.805 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.240 0.760 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.056 0.944 42 H 0.033 0.967 43 H 0.044 0.956 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -25.077 8.595 -6.702 27.343 hybrid contribution 0.253 -0.713 0.606 0.969 sum -24.823 7.882 -6.096 26.749 Atomic orbital electron populations 1.23487 0.75907 1.05668 1.02969 1.86295 1.23663 1.25324 1.86756 1.18646 0.90265 0.86263 0.91857 1.20092 1.03307 0.89315 1.13652 1.24502 0.98233 1.02109 1.01332 1.20669 1.02598 0.86377 1.05250 1.82983 1.03885 0.92694 1.68948 1.22700 0.95567 0.99601 1.32032 1.15922 0.82083 0.87862 0.76059 1.90819 1.80303 1.22191 1.52571 1.45877 1.05264 1.10456 1.75867 1.20821 0.85275 0.88502 1.01768 1.22580 0.92658 0.97073 0.98972 0.87322 1.21669 0.84129 0.98020 0.94369 1.44695 1.01186 1.38878 1.50237 1.19472 0.88537 1.11044 1.18014 0.89943 1.25643 0.97873 1.00840 1.01552 1.70144 1.09647 1.36901 1.43395 0.85061 0.77919 0.78641 0.77609 1.21685 1.21926 1.19089 1.21674 0.92602 0.90109 0.92043 1.22980 0.93177 0.85195 0.95126 0.89389 1.86400 1.49548 1.24572 1.77400 0.87039 0.90881 0.90676 0.80458 0.89900 0.88007 0.88201 0.76033 0.91401 0.92849 0.93105 0.97228 0.94355 0.96744 0.95613 0.75985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.94 113.37 1.13 1.32 16 2 O -0.31 -8.31 9.36 -74.35 -0.70 -9.01 16 3 C 0.19 4.77 6.70 21.99 0.15 4.92 16 4 C -0.23 -3.70 9.02 21.17 0.19 -3.51 16 5 C -0.14 -1.94 6.26 24.63 0.15 -1.79 16 6 C -0.09 -0.53 10.32 71.23 0.74 0.20 16 7 S 0.25 4.56 21.92 -56.49 -1.24 3.32 16 8 C -0.38 -10.54 6.28 22.90 0.14 -10.39 16 9 C 0.59 20.38 7.60 85.10 0.65 21.03 16 10 O -0.58 -24.60 15.84 12.17 0.19 -24.41 16 11 N -0.72 -22.34 5.49 -472.01 -2.59 -24.93 16 12 C 0.16 5.44 4.60 86.38 0.40 5.84 16 13 C -0.09 -3.26 2.98 -9.40 -0.03 -3.29 16 14 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 15 C 0.14 6.06 6.64 86.86 0.58 6.64 16 16 N -0.62 -32.42 3.39 -692.00 -2.35 -34.77 16 17 C -0.24 -13.64 10.28 84.03 0.86 -12.77 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 20 N -0.95 -56.91 10.31 21.65 0.22 -56.68 16 21 Si 0.98 45.74 29.55 68.60 2.03 47.76 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.16 7.88 5.14 86.72 0.45 8.33 16 26 C 0.10 3.54 4.08 31.78 0.13 3.67 16 27 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 28 O -0.57 -20.68 12.24 -148.98 -1.82 -22.50 16 29 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 0.74 7.87 -2.39 -0.02 0.72 16 31 H 0.07 0.73 7.89 -2.39 -0.02 0.71 16 32 H 0.18 1.65 6.99 -2.91 -0.02 1.63 16 33 H 0.08 0.39 8.11 -2.38 -0.02 0.37 16 34 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.40 10.60 7.44 -92.71 -0.69 9.91 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 2.10 7.55 -2.39 -0.02 2.09 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.01 0.45 7.91 -2.39 -0.02 0.43 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.01 0.79 7.44 -2.39 -0.02 0.78 16 43 H 0.03 1.38 7.38 -2.39 -0.02 1.36 16 44 H 0.39 11.16 9.12 -74.06 -0.68 10.48 16 Total: -1.00 -81.66 375.60 -0.58 -82.24 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.32 Total: 22.09 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.00 Total: 16.88 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -4.72 Total: -116.38 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -2.33 Total: -55.92 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -1.24 Total: 3.32 kcal Total: -81.66 -0.58 -82.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958451986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.534 kcal (2) G-P(sol) polarization free energy of solvation -81.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds