Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35788 * 116.99994 * 2 1 4 4 C 1.38023 * 123.47103 * 0.19986 * 3 2 1 5 5 C 1.33620 * 115.08415 * 180.26948 * 4 3 2 6 6 C 1.50697 * 124.42534 * 179.74693 * 5 4 3 7 7 S 1.70572 * 111.14513 * 359.74967 * 5 4 3 8 8 C 1.37270 * 123.47219 * 179.97438 * 3 2 1 9 9 C 1.41724 * 125.47277 * 0.03052 * 8 3 2 10 10 O 1.21775 * 120.00077 * 359.70300 * 9 8 3 11 11 N 1.34783 * 119.99788 * 179.71510 * 9 8 3 12 12 C 1.46501 * 119.99965 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47195 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.51228 * 304.90238 * 13 12 11 15 15 C 1.52874 * 109.62721 * 184.90811 * 13 12 11 16 16 N 1.47146 * 108.61038 * 187.90024 * 15 13 12 17 17 C 1.36938 * 120.98166 * 230.49961 * 16 15 13 18 18 H 1.08000 * 120.00437 * 26.46046 * 17 16 15 19 19 C 1.38817 * 120.00106 * 206.45559 * 17 16 15 20 20 N 1.31620 * 119.99788 * 16.42248 * 19 17 16 21 21 Si 1.86802 * 119.99867 * 196.14101 * 19 17 16 22 22 H 1.48493 * 109.47220 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46793 * 120.00703 * 21 19 17 24 24 H 1.48501 * 109.47003 * 240.00077 * 21 19 17 25 25 C 1.47152 * 118.03553 * 50.22601 * 16 15 13 26 26 C 1.53291 * 108.38463 * 309.71610 * 25 16 15 27 27 O 1.42958 * 109.22268 * 52.30270 * 26 25 16 28 28 H 1.09001 * 109.46944 * 60.00075 * 1 2 3 29 29 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47658 * 300.00535 * 1 2 3 31 31 H 1.07998 * 122.45674 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.46932 * 179.97438 * 6 5 4 33 33 H 1.09009 * 109.47202 * 299.97497 * 6 5 4 34 34 H 1.08990 * 109.47453 * 59.97557 * 6 5 4 35 35 H 0.97002 * 119.99921 * 359.97438 * 11 9 8 36 36 H 1.09002 * 109.46907 * 59.99826 * 12 11 9 37 37 H 1.08995 * 109.47254 * 300.00014 * 12 11 9 38 38 H 1.09004 * 109.61801 * 68.08073 * 15 13 12 39 39 H 1.09002 * 109.52448 * 307.66775 * 15 13 12 40 40 H 0.96997 * 119.99644 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.68009 * 69.44637 * 25 16 15 42 42 H 1.08998 * 109.67837 * 189.95158 * 25 16 15 43 43 H 1.09002 * 109.50962 * 172.22809 * 26 25 16 44 44 H 1.08996 * 109.51452 * 292.32644 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3652 2.4108 0.0040 5 6 2.1389 3.5002 -0.0024 6 6 1.6188 4.9145 -0.0051 7 16 3.7922 3.0806 -0.0070 8 6 3.4094 1.3646 0.0005 9 6 4.3567 0.3105 0.0005 10 8 3.9793 -0.8473 0.0054 11 7 5.6753 0.5895 -0.0048 12 6 6.6546 -0.5001 -0.0042 13 6 8.0683 0.0847 -0.0115 14 1 8.1770 0.7639 -0.8570 15 6 9.0908 -1.0451 -0.1342 16 7 10.4375 -0.4820 0.0517 17 6 11.4394 -0.7398 -0.8455 18 1 11.1982 -0.9736 -1.8719 19 6 12.7651 -0.7007 -0.4356 20 7 13.0589 -0.7398 0.8467 21 14 14.1323 -0.6005 -1.7046 22 1 13.5423 -0.5755 -3.0670 23 1 14.9218 0.6379 -1.4846 24 1 15.0197 -1.7836 -1.5705 25 6 10.6741 0.3715 1.2269 26 6 9.5731 1.4367 1.2803 27 8 8.2962 0.7980 1.2063 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2866 2.4660 0.0079 32 1 2.4580 5.6102 -0.0100 33 1 1.0083 5.0755 -0.8938 34 1 1.0141 5.0811 0.8862 35 1 5.9759 1.5118 -0.0089 36 1 6.5123 -1.1169 -0.8917 37 1 6.5182 -1.1108 0.8883 38 1 9.0164 -1.5004 -1.1218 39 1 8.8978 -1.7959 0.6322 40 1 13.9852 -0.7128 1.1330 41 1 10.6434 -0.2342 2.1325 42 1 11.6480 0.8533 1.1405 43 1 9.6488 1.9920 2.2153 44 1 9.6877 2.1214 0.4400 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035530218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -57.689139 kcal Electronic energy + Delta-G solvation = -27038.997638 eV Core-core repulsion = 23084.620473 eV Total energy + Delta-G solvation = -3954.377165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44939 -39.22214 -38.29696 -36.64040 -34.78593 -34.20936 -32.32946 -31.48027 -30.63830 -28.45940 -27.77772 -26.91311 -25.15295 -23.49629 -23.15805 -22.06490 -21.18238 -19.89989 -19.38713 -18.45921 -17.27073 -16.83225 -16.32362 -16.22178 -15.93804 -15.43951 -14.99124 -14.76613 -14.64878 -14.38312 -14.25021 -14.17805 -13.86135 -13.66521 -13.21974 -13.08261 -12.92778 -12.75584 -12.61990 -12.50924 -12.12026 -11.80010 -11.51345 -11.20950 -11.16908 -11.11134 -10.85812 -10.69081 -10.37356 -10.24144 -9.98050 -9.85206 -9.61957 -9.06770 -9.04085 -8.78713 -8.54380 -8.28277 -6.74125 -5.83697 -3.27609 0.25056 1.15715 1.49302 2.07887 3.21205 3.33935 3.36469 3.40477 3.42664 3.44596 4.17787 4.28085 4.43862 4.69750 4.75567 4.78516 4.85714 5.01529 5.05229 5.16426 5.20447 5.31310 5.34933 5.47186 5.50704 5.54363 5.56700 5.83265 5.86176 5.94135 6.08574 6.19590 6.32393 6.39474 6.51115 6.62428 6.78793 7.00462 7.12101 7.52976 7.66044 7.72012 7.88300 8.34145 8.39333 9.12176 9.74750 10.31912 11.24547 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.002307 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.750059 B =12132.419485 C =12786.582570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.271 6.271 3 C 0.191 3.809 4 C -0.222 4.222 5 C -0.165 4.165 6 C -0.088 4.088 7 S 0.232 5.768 8 C -0.325 4.325 9 C 0.592 3.408 10 O -0.528 6.528 11 N -0.723 5.723 12 C 0.134 3.866 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.122 3.878 16 N -0.594 5.594 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.139 3.861 26 C 0.039 3.961 27 O -0.389 6.389 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.148 0.852 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.397 0.603 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.254 0.746 41 H 0.028 0.972 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.324 12.063 -1.253 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.182 6.182 3 C 0.131 3.869 4 C -0.255 4.255 5 C -0.285 4.285 6 C -0.147 4.147 7 S 0.497 5.503 8 C -0.445 4.445 9 C 0.380 3.620 10 O -0.407 6.407 11 N -0.375 5.375 12 C 0.010 3.990 13 C 0.005 3.995 14 H 0.076 0.924 15 C -0.005 4.005 16 N -0.318 5.318 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.014 3.986 26 C -0.039 4.039 27 O -0.308 6.308 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.231 0.769 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.090 11.810 -1.048 26.850 hybrid contribution -0.472 -0.169 -0.687 0.851 sum -24.562 11.641 -1.735 27.237 Atomic orbital electron populations 1.23174 0.78484 1.04400 1.01178 1.86350 1.20751 1.24108 1.86979 1.18207 0.90200 0.85331 0.93184 1.19913 1.01864 0.90666 1.13093 1.23982 0.99343 1.00524 1.04650 1.20458 1.01782 0.88835 1.03576 1.83131 1.02502 0.95703 1.68928 1.22731 0.95388 0.98080 1.28252 1.15524 0.81594 0.87707 0.77199 1.90867 1.79581 1.20051 1.50164 1.45834 1.05378 1.10318 1.75923 1.21390 0.85443 0.89164 1.03026 1.22728 0.93442 0.95622 0.87712 0.92425 1.21358 0.86145 0.93054 0.99980 1.44056 1.05934 1.54632 1.27186 1.19240 0.85360 1.43647 0.90041 0.91313 1.25060 0.97791 1.00913 0.95943 1.70044 1.17706 1.53653 1.13310 0.86180 0.82069 0.77369 0.80909 1.20205 1.21508 1.21621 1.21439 0.96904 0.90857 0.89422 1.23322 0.84554 0.95815 1.00177 1.87800 1.35800 1.69209 1.38035 0.92657 0.87853 0.92633 0.83395 0.90802 0.89964 0.89944 0.76932 0.90045 0.90557 0.91744 0.95183 0.93563 0.95343 0.88815 0.90050 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.94 101.05 1.00 1.18 16 2 O -0.27 -3.57 9.36 -36.59 -0.34 -3.91 16 3 C 0.19 2.39 6.70 -40.01 -0.27 2.12 16 4 C -0.22 -1.99 9.02 -41.28 -0.37 -2.36 16 5 C -0.16 -1.33 6.27 -35.93 -0.23 -1.55 16 6 C -0.09 -0.41 10.32 36.00 0.37 -0.04 16 7 S 0.23 2.22 21.92 -107.50 -2.36 -0.13 16 8 C -0.32 -4.42 6.28 -38.60 -0.24 -4.66 16 9 C 0.59 9.76 7.60 -14.93 -0.11 9.65 16 10 O -0.53 -10.51 15.84 -12.40 -0.20 -10.71 16 11 N -0.72 -11.02 5.49 -63.19 -0.35 -11.37 16 12 C 0.13 2.19 5.35 -4.04 -0.02 2.17 16 13 C 0.06 1.17 2.80 -26.80 -0.07 1.10 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 15 C 0.12 2.59 6.00 -3.75 -0.02 2.57 16 16 N -0.59 -15.00 3.05 -172.09 -0.53 -15.53 16 17 C -0.25 -6.93 9.65 -15.06 -0.15 -7.07 16 18 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 19 C 0.00 0.04 4.95 -17.43 -0.09 -0.04 16 20 N -0.90 -26.07 11.15 55.49 0.62 -25.45 16 21 Si 0.91 21.49 29.58 -169.99 -5.03 16.46 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.14 3.34 5.44 -3.54 -0.02 3.32 16 26 C 0.04 0.76 6.98 37.31 0.26 1.02 16 27 O -0.39 -7.49 10.33 -35.23 -0.36 -7.85 16 28 H 0.05 0.32 7.89 -51.93 -0.41 -0.09 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 31 H 0.15 0.93 6.99 -52.49 -0.37 0.56 16 32 H 0.07 0.29 8.11 -51.93 -0.42 -0.13 16 33 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.40 5.38 7.44 -40.82 -0.30 5.08 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -34.49 375.38 -9.26 -43.75 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.42 Total: 1.69 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 0.05 Total: 7.40 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.25 Total: -52.35 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.90 Total: -22.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.36 Total: -0.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.49 -9.26 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035530218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.940 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds