Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33654 * 125.80431 * 2 1 4 4 C 1.34216 * 110.90847 * 180.28517 * 3 2 1 5 5 C 1.34178 * 109.12489 * 359.73111 * 4 3 2 6 6 C 1.36414 * 125.80167 * 179.81263 * 2 1 3 7 7 C 1.47381 * 127.19115 * 359.97438 * 6 2 1 8 8 O 1.21612 * 119.99920 * 359.70954 * 7 6 2 9 9 N 1.34776 * 120.00398 * 179.70464 * 7 6 2 10 10 C 1.46498 * 120.00351 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47226 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47152 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46830 * 304.99846 * 12 11 10 14 14 C 1.53000 * 109.47187 * 185.00354 * 12 11 10 15 15 N 1.46496 * 109.47630 * 64.99994 * 12 11 10 16 16 C 1.34777 * 120.00258 * 205.00405 * 15 12 11 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 12 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 12 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.08995 * 109.47027 * 270.18846 * 1 2 3 29 29 H 1.09004 * 109.47282 * 30.18555 * 1 2 3 30 30 H 1.09005 * 109.47347 * 150.18659 * 1 2 3 31 31 H 1.08001 * 125.43876 * 179.71886 * 4 3 2 32 32 H 1.07997 * 127.02593 * 179.97438 * 5 4 3 33 33 H 0.97007 * 119.99765 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.46711 * 60.00749 * 10 9 7 35 35 H 1.08995 * 109.47155 * 300.00701 * 10 9 7 36 36 H 1.08994 * 109.46979 * 59.99957 * 11 10 9 37 37 H 1.09003 * 109.47135 * 300.00519 * 11 10 9 38 38 H 1.08992 * 109.47302 * 59.99702 * 14 12 11 39 39 H 1.09006 * 109.47229 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46821 * 299.99498 * 14 12 11 41 41 H 0.96999 * 119.99694 * 24.99795 * 15 12 11 42 42 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 43 43 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 44 44 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7389 -0.0062 5 6 3.6849 -0.5992 -0.0046 6 6 2.3050 -1.1064 0.0036 7 6 1.8739 -2.5157 0.0088 8 8 0.6889 -2.7891 0.0155 9 7 2.7929 -3.5016 0.0059 10 6 2.3644 -4.9025 0.0116 11 6 3.5946 -5.8122 0.0074 12 6 3.1470 -7.2752 0.0127 13 1 2.4813 -7.4484 0.8582 14 6 4.3726 -8.1830 0.1344 15 7 2.4398 -7.5741 -1.2350 16 6 1.5404 -8.5770 -1.2761 17 8 1.3167 -9.2323 -0.2804 18 6 0.8125 -8.8841 -2.5595 19 16 -0.3176 -10.2730 -2.2947 20 6 -1.0151 -10.4116 -3.9068 21 1 -0.7015 -9.7380 -4.6905 22 6 -1.9683 -11.3858 -4.1690 23 7 -2.4891 -11.4896 -5.3735 24 14 -2.5123 -12.5494 -2.8129 25 1 -3.6706 -11.9627 -2.0922 26 1 -2.9072 -13.8519 -3.4069 27 1 -1.3917 -12.7587 -1.8612 28 1 -0.3633 0.0034 1.0276 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3634 -0.8917 -0.5109 31 1 4.4173 1.4283 -0.0119 32 1 4.5927 -1.1842 -0.0088 33 1 3.7381 -3.2835 0.0008 34 1 1.7618 -5.1017 -0.8747 35 1 1.7717 -5.0975 0.9052 36 1 4.1968 -5.6128 0.8937 37 1 4.1876 -5.6172 -0.8861 38 1 4.8987 -7.9606 1.0626 39 1 4.0538 -9.2254 0.1377 40 1 5.0384 -8.0098 -0.7112 41 1 2.6189 -7.0502 -2.0314 42 1 0.2448 -8.0083 -2.8738 43 1 1.5345 -9.1459 -3.3330 44 1 -3.1550 -12.1707 -5.5570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075549573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -74.283495 kcal Electronic energy + Delta-G solvation = -25865.563977 eV Core-core repulsion = 21910.467227 eV Total energy + Delta-G solvation = -3955.096751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.99633 -39.87676 -39.36648 -36.69989 -34.74400 -33.45156 -32.41867 -32.30612 -31.83907 -29.57100 -28.58965 -27.25308 -25.59224 -24.52854 -22.95049 -21.68255 -21.33765 -20.44466 -20.11437 -18.34488 -17.81847 -16.80033 -16.66476 -16.42007 -16.17643 -15.92356 -15.45168 -15.08294 -14.93504 -14.81315 -14.25911 -13.85912 -13.68969 -13.60316 -13.49613 -13.37990 -13.30583 -13.26925 -12.94326 -12.77473 -12.26526 -12.14807 -12.04844 -11.80971 -11.58794 -11.24415 -11.14866 -10.98602 -10.57769 -10.27149 -10.24508 -9.83700 -9.49644 -9.41717 -9.03121 -8.98109 -8.95373 -8.47802 -6.89228 -6.26749 -3.98200 0.98230 1.59513 2.36195 2.78149 2.88662 2.98880 3.05622 3.31666 3.36179 3.52307 3.67148 4.06665 4.34296 4.35216 4.42119 4.42680 4.61895 4.69082 4.78550 4.85882 5.05664 5.12263 5.15897 5.17926 5.21273 5.23728 5.30934 5.34726 5.42492 5.53471 5.59539 5.71683 5.76342 5.79115 5.84137 5.92714 6.04080 6.10040 6.12104 6.56973 6.57518 7.18450 7.61142 7.94283 7.96350 8.43996 8.50661 9.19450 10.82497 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002020 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.485359 B =13857.521360 C =15193.057832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.083 3.917 3 O -0.177 6.177 4 C -0.038 4.038 5 C -0.190 4.190 6 C -0.250 4.250 7 C 0.588 3.412 8 O -0.535 6.535 9 N -0.724 5.724 10 C 0.118 3.882 11 C -0.138 4.138 12 C 0.147 3.853 13 H 0.092 0.908 14 C -0.163 4.163 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.208 0.792 32 H 0.156 0.844 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.398 0.602 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.065 25.064 11.781 33.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 O -0.072 6.072 4 C -0.104 4.104 5 C -0.209 4.209 6 C -0.254 4.254 7 C 0.376 3.624 8 O -0.414 6.414 9 N -0.376 5.376 10 C -0.005 4.005 11 C -0.176 4.176 12 C 0.042 3.958 13 H 0.110 0.890 14 C -0.221 4.221 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.225 0.775 32 H 0.174 0.826 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.606 23.942 13.331 32.042 hybrid contribution 0.821 0.449 -1.282 1.587 sum 17.428 24.390 12.050 32.308 Atomic orbital electron populations 1.20662 0.83559 1.05347 1.04588 1.22901 0.94235 0.83054 0.96868 1.83790 1.17179 1.35030 1.71250 1.23869 0.83590 0.96412 1.06534 1.22844 0.96537 0.94596 1.06914 1.21146 0.93351 0.93851 1.17069 1.17192 0.85488 0.83729 0.75993 1.90809 1.16520 1.83985 1.50052 1.45760 1.09598 1.06183 1.76063 1.21427 0.96877 0.78781 1.03464 1.22107 0.97627 0.94110 1.03741 1.20783 0.94169 0.92336 0.88558 0.89024 1.22172 0.97207 1.01045 1.01691 1.46090 1.43258 1.36265 1.13236 1.20268 0.78494 0.79183 0.90165 1.90696 1.63879 1.48648 1.36043 1.23289 1.02155 1.04542 0.97573 1.84774 1.49432 1.38313 1.19015 1.22320 1.27649 1.22296 0.94573 0.89401 1.24722 0.94592 0.96437 0.95627 1.69942 1.27764 1.33994 1.20026 0.86725 0.81460 0.80781 0.82827 1.19196 1.19978 1.15938 0.89166 0.90242 0.87084 0.77546 0.82603 0.76683 0.90723 0.90980 0.89702 0.90558 0.91825 0.91464 0.92468 0.76748 0.88499 0.88515 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 9.88 36.00 0.36 -0.30 16 2 C 0.08 0.75 7.37 -34.97 -0.26 0.49 16 3 O -0.18 -1.42 10.52 7.65 0.08 -1.34 16 4 C -0.04 -0.21 12.03 29.30 0.35 0.14 16 5 C -0.19 -1.18 10.60 -37.45 -0.40 -1.58 16 6 C -0.25 -2.33 6.31 -103.28 -0.65 -2.98 16 7 C 0.59 6.52 7.81 -12.54 -0.10 6.42 16 8 O -0.54 -7.85 14.85 5.27 0.08 -7.77 16 9 N -0.72 -5.91 5.55 -61.40 -0.34 -6.25 16 10 C 0.12 1.06 5.56 -4.04 -0.02 1.04 16 11 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 12 C 0.15 1.46 2.57 -67.94 -0.17 1.28 16 13 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 14 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 15 N -0.73 -8.75 4.53 -53.81 -0.24 -8.99 16 16 C 0.53 9.25 7.81 -10.98 -0.09 9.16 16 17 O -0.52 -10.95 15.53 5.56 0.09 -10.87 16 18 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 21 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 22 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.82 13.97 55.49 0.78 -26.04 16 24 Si 0.86 22.03 27.74 -169.99 -4.72 17.31 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.11 1.05 6.49 -51.93 -0.34 0.71 16 31 H 0.21 0.31 8.06 -52.49 -0.42 -0.11 16 32 H 0.16 0.51 7.74 -52.49 -0.41 0.11 16 33 H 0.40 2.04 7.64 -40.82 -0.31 1.73 16 34 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.40 3.73 8.60 -40.82 -0.35 3.38 16 42 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 44 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -37.64 389.82 -7.15 -44.79 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.43 Total: 1.74 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.32 Total: -2.84 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.19 Total: -41.28 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.24 Total: -19.98 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.64 -7.15 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075549573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.497 kcal (2) G-P(sol) polarization free energy of solvation -37.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds