Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33654 * 125.80431 * 2 1 4 4 C 1.34216 * 110.90847 * 180.28517 * 3 2 1 5 5 C 1.34178 * 109.12489 * 359.73111 * 4 3 2 6 6 C 1.36414 * 125.80167 * 179.81263 * 2 1 3 7 7 C 1.47381 * 127.19115 * 359.97438 * 6 2 1 8 8 O 1.21612 * 119.99920 * 359.70954 * 7 6 2 9 9 N 1.34776 * 120.00398 * 179.70464 * 7 6 2 10 10 C 1.46498 * 120.00351 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47226 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47152 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46830 * 304.99846 * 12 11 10 14 14 C 1.53000 * 109.47187 * 185.00354 * 12 11 10 15 15 N 1.46496 * 109.47630 * 64.99994 * 12 11 10 16 16 C 1.34777 * 120.00258 * 205.00405 * 15 12 11 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 12 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 12 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.08995 * 109.47027 * 270.18846 * 1 2 3 29 29 H 1.09004 * 109.47282 * 30.18555 * 1 2 3 30 30 H 1.09005 * 109.47347 * 150.18659 * 1 2 3 31 31 H 1.08001 * 125.43876 * 179.71886 * 4 3 2 32 32 H 1.07997 * 127.02593 * 179.97438 * 5 4 3 33 33 H 0.97007 * 119.99765 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.46711 * 60.00749 * 10 9 7 35 35 H 1.08995 * 109.47155 * 300.00701 * 10 9 7 36 36 H 1.08994 * 109.46979 * 59.99957 * 11 10 9 37 37 H 1.09003 * 109.47135 * 300.00519 * 11 10 9 38 38 H 1.08992 * 109.47302 * 59.99702 * 14 12 11 39 39 H 1.09006 * 109.47229 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46821 * 299.99498 * 14 12 11 41 41 H 0.96999 * 119.99694 * 24.99795 * 15 12 11 42 42 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 43 43 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 44 44 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7389 -0.0062 5 6 3.6849 -0.5992 -0.0046 6 6 2.3050 -1.1064 0.0036 7 6 1.8739 -2.5157 0.0088 8 8 0.6889 -2.7891 0.0155 9 7 2.7929 -3.5016 0.0059 10 6 2.3644 -4.9025 0.0116 11 6 3.5946 -5.8122 0.0074 12 6 3.1470 -7.2752 0.0127 13 1 2.4813 -7.4484 0.8582 14 6 4.3726 -8.1830 0.1344 15 7 2.4398 -7.5741 -1.2350 16 6 1.5404 -8.5770 -1.2761 17 8 1.3167 -9.2323 -0.2804 18 6 0.8125 -8.8841 -2.5595 19 16 -0.3176 -10.2730 -2.2947 20 6 -1.0151 -10.4116 -3.9068 21 1 -0.7015 -9.7380 -4.6905 22 6 -1.9683 -11.3858 -4.1690 23 7 -2.4891 -11.4896 -5.3735 24 14 -2.5123 -12.5494 -2.8129 25 1 -3.6706 -11.9627 -2.0922 26 1 -2.9072 -13.8519 -3.4069 27 1 -1.3917 -12.7587 -1.8612 28 1 -0.3633 0.0034 1.0276 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3634 -0.8917 -0.5109 31 1 4.4173 1.4283 -0.0119 32 1 4.5927 -1.1842 -0.0088 33 1 3.7381 -3.2835 0.0008 34 1 1.7618 -5.1017 -0.8747 35 1 1.7717 -5.0975 0.9052 36 1 4.1968 -5.6128 0.8937 37 1 4.1876 -5.6172 -0.8861 38 1 4.8987 -7.9606 1.0626 39 1 4.0538 -9.2254 0.1377 40 1 5.0384 -8.0098 -0.7112 41 1 2.6189 -7.0502 -2.0314 42 1 0.2448 -8.0083 -2.8738 43 1 1.5345 -9.1459 -3.3330 44 1 -3.1550 -12.1707 -5.5570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075549573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -102.545073 kcal Electronic energy + Delta-G solvation = -25866.789491 eV Core-core repulsion = 21910.467227 eV Total energy + Delta-G solvation = -3956.322265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53968 -40.92994 -40.41318 -37.69542 -35.67470 -34.68172 -34.07626 -33.09013 -32.72440 -30.56370 -29.74746 -27.85947 -27.82423 -25.24564 -23.63276 -22.61128 -21.95400 -21.61350 -20.81674 -19.89113 -18.89211 -17.99818 -17.46861 -17.35172 -17.10663 -16.86648 -16.78998 -16.43399 -16.32842 -15.78651 -15.48605 -15.01239 -14.77243 -14.76037 -14.56954 -14.33325 -14.16761 -13.96505 -13.85417 -13.74270 -13.36857 -13.34106 -13.08021 -13.01229 -12.70536 -12.62402 -12.43545 -12.39647 -11.91515 -11.86561 -11.18197 -11.12763 -10.95650 -10.85420 -10.54688 -10.22302 -10.08267 -9.52871 -9.00286 -8.52502 -6.23149 0.30514 0.98589 1.13896 1.30755 1.45964 1.55596 1.58649 1.82123 2.21442 2.22984 2.27543 2.29591 2.71503 2.85562 3.60147 3.71053 3.73153 3.86095 3.90599 3.98579 4.07682 4.22002 4.34950 4.43427 4.45783 4.48755 4.57473 4.60427 4.64659 4.74809 4.82734 4.87613 4.89783 5.03596 5.13351 5.18884 5.34325 5.36538 5.43079 5.54626 5.69777 6.03779 6.10305 6.48243 6.52959 6.92549 7.19811 7.22284 8.59954 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002020 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.485359 B =13857.521360 C =15193.057832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.063 3.937 3 O -0.185 6.185 4 C -0.033 4.033 5 C -0.192 4.192 6 C -0.271 4.271 7 C 0.580 3.420 8 O -0.583 6.583 9 N -0.706 5.706 10 C 0.119 3.881 11 C -0.118 4.118 12 C 0.143 3.857 13 H 0.067 0.933 14 C -0.157 4.157 15 N -0.709 5.709 16 C 0.536 3.464 17 O -0.561 6.561 18 C -0.113 4.113 19 S -0.176 6.176 20 C -0.529 4.529 21 H 0.061 0.939 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.264 1.264 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.249 0.751 32 H 0.188 0.812 33 H 0.417 0.583 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.415 0.585 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.298 26.694 12.714 36.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.010 3.990 3 O -0.081 6.081 4 C -0.098 4.098 5 C -0.211 4.211 6 C -0.276 4.276 7 C 0.369 3.631 8 O -0.465 6.465 9 N -0.358 5.358 10 C -0.005 4.005 11 C -0.156 4.156 12 C 0.038 3.962 13 H 0.085 0.915 14 C -0.215 4.215 15 N -0.364 5.364 16 C 0.322 3.678 17 O -0.439 6.439 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.677 4.677 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.265 0.735 32 H 0.205 0.795 33 H 0.255 0.745 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.252 0.748 42 H 0.126 0.874 43 H 0.132 0.868 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.922 25.615 14.243 35.438 hybrid contribution -0.050 0.118 -1.592 1.597 sum 19.871 25.733 12.650 34.887 Atomic orbital electron populations 1.20601 0.83584 1.05053 1.04785 1.23078 0.94784 0.83584 0.97571 1.83797 1.18327 1.34728 1.71241 1.24760 0.83308 0.97192 1.04527 1.23192 0.95957 0.95105 1.06848 1.21255 0.95415 0.92857 1.18044 1.17588 0.85177 0.84949 0.75357 1.90784 1.18561 1.84788 1.52380 1.45571 1.10225 1.05293 1.74716 1.21336 0.97881 0.79786 1.01508 1.22004 0.96597 0.90438 1.06570 1.20990 0.93862 0.94975 0.86361 0.91461 1.22119 0.96923 0.98556 1.03919 1.45911 1.41310 1.34193 1.14945 1.19891 0.79213 0.80127 0.88597 1.90684 1.65611 1.50647 1.37004 1.23293 1.01425 1.02102 0.99593 1.84686 1.51319 1.42059 1.16856 1.22464 1.27849 1.21705 0.95650 0.92044 1.25588 0.94725 0.98038 0.97779 1.70019 1.28607 1.35095 1.21754 0.85851 0.80917 0.79393 0.80106 1.18842 1.18182 1.16024 0.88780 0.88472 0.89328 0.73510 0.79500 0.74500 0.92741 0.93202 0.86770 0.87718 0.89328 0.94865 0.90560 0.74839 0.87397 0.86764 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.88 71.24 0.70 -0.66 16 2 C 0.06 1.13 7.37 25.26 0.19 1.32 16 3 O -0.18 -2.69 10.52 4.45 0.05 -2.64 16 4 C -0.03 -0.27 12.03 66.89 0.80 0.54 16 5 C -0.19 -1.82 10.60 23.65 0.25 -1.57 16 6 C -0.27 -4.83 6.31 -18.99 -0.12 -4.95 16 7 C 0.58 12.78 7.81 86.65 0.68 13.45 16 8 O -0.58 -17.97 14.85 -4.07 -0.06 -18.04 16 9 N -0.71 -10.25 5.55 -466.42 -2.59 -12.84 16 10 C 0.12 1.98 5.56 86.38 0.48 2.46 16 11 C -0.12 -1.11 4.87 30.59 0.15 -0.96 16 12 C 0.14 2.53 2.57 44.99 0.12 2.64 16 13 H 0.07 1.58 7.58 -2.39 -0.02 1.57 16 14 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 15 N -0.71 -15.75 4.53 -442.54 -2.00 -17.76 16 16 C 0.54 18.36 7.81 87.66 0.68 19.04 16 17 O -0.56 -23.95 15.53 -3.03 -0.05 -24.00 16 18 C -0.11 -4.35 6.16 71.24 0.44 -3.91 16 19 S -0.18 -9.07 18.55 -56.49 -1.05 -10.11 16 20 C -0.53 -31.41 10.04 67.96 0.68 -30.73 16 21 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 22 C 0.04 2.63 5.50 84.86 0.47 3.10 16 23 N -0.92 -56.66 13.97 21.65 0.30 -56.36 16 24 Si 0.92 45.87 27.74 68.60 1.90 47.78 16 25 H -0.26 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.09 1.85 6.49 -2.38 -0.02 1.84 16 31 H 0.25 -0.38 8.06 -2.91 -0.02 -0.40 16 32 H 0.19 0.40 7.74 -2.91 -0.02 0.37 16 33 H 0.42 2.81 7.64 -92.70 -0.71 2.10 16 34 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.41 6.68 8.60 -92.71 -0.80 5.88 16 42 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 44 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -86.54 389.82 2.20 -84.35 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.51 Total: 11.63 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 6.20 Total: -2.01 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -4.29 Total: -86.95 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.06 Total: -44.68 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.78 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.11 kcal Total: -86.54 2.20 -84.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075549573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.197 kcal (2) G-P(sol) polarization free energy of solvation -86.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds