Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34181 * 125.43841 * 2 1 4 4 C 1.47012 * 105.95354 * 179.97438 * 3 2 1 5 5 C 1.47382 * 127.19117 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99937 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99755 * 180.27474 * 5 4 3 8 8 C 1.46505 * 119.99724 * 179.72668 * 7 5 4 9 9 H 1.09000 * 109.46989 * 324.99747 * 8 7 5 10 10 C 1.52996 * 109.47130 * 85.00158 * 8 7 5 11 11 C 1.52998 * 109.47085 * 205.00369 * 8 7 5 12 12 C 1.53004 * 109.47475 * 64.99994 * 11 8 7 13 13 N 1.46498 * 109.47473 * 180.02562 * 12 11 8 14 14 C 1.34773 * 120.00043 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00130 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99941 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47226 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00114 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99850 * 359.97438 * 18 17 16 20 20 C 1.38791 * 120.00219 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99999 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00343 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46942 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47575 * 119.99492 * 22 20 18 25 25 H 1.48501 * 109.46963 * 239.99563 * 22 20 18 26 26 C 1.36413 * 105.61884 * 0.26362 * 4 3 2 27 27 O 1.33656 * 108.39770 * 359.57324 * 26 4 3 28 28 H 1.08994 * 109.47036 * 90.00154 * 1 2 3 29 29 H 1.08998 * 109.46779 * 210.00171 * 1 2 3 30 30 H 1.09003 * 109.46661 * 329.99780 * 1 2 3 31 31 H 1.08000 * 127.02068 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00483 * 359.73101 * 7 5 4 33 33 H 1.08998 * 109.47099 * 300.00036 * 10 8 7 34 34 H 1.09002 * 109.46807 * 60.00065 * 10 8 7 35 35 H 1.09003 * 109.47061 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47475 * 185.00182 * 11 8 7 37 37 H 1.09001 * 109.47293 * 305.00106 * 11 8 7 38 38 H 1.09000 * 109.46933 * 300.00037 * 12 11 8 39 39 H 1.08992 * 109.47030 * 59.99820 * 12 11 8 40 40 H 0.97001 * 119.99562 * 359.97438 * 13 12 11 41 41 H 1.09000 * 109.47249 * 300.00060 * 16 14 13 42 42 H 1.09006 * 109.46907 * 59.99928 * 16 14 13 43 43 H 0.96996 * 120.00279 * 180.02562 * 21 20 18 44 44 H 1.08005 * 125.80470 * 179.71597 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8320 2.6266 0.0000 7 7 6.1068 0.8074 -0.0046 8 6 7.3309 1.6123 -0.0109 9 1 7.1693 2.5147 -0.6005 10 6 7.6945 1.9988 1.4241 11 6 8.4725 0.7996 -0.6251 12 6 8.1646 0.5195 -2.0974 13 7 9.2574 -0.2592 -2.6853 14 6 9.2033 -0.6242 -3.9816 15 8 8.2498 -0.3084 -4.6612 16 6 10.3277 -1.4248 -4.5865 17 16 9.9634 -1.7563 -6.3282 18 6 11.3981 -2.6783 -6.7708 19 1 12.1635 -2.8730 -6.0340 20 6 11.5453 -3.1536 -8.0665 21 7 10.6127 -2.9160 -8.9646 22 14 13.0660 -4.1318 -8.5356 23 1 13.9560 -4.2601 -7.3538 24 1 12.6616 -5.4830 -9.0003 25 1 13.7895 -3.4294 -9.6257 26 6 3.5790 -0.7582 -0.0051 27 8 2.2853 -1.0936 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9596 2.1230 -0.0004 32 1 6.1631 -0.1610 -0.0040 33 1 6.8813 2.5778 1.8615 34 1 7.8561 1.0963 2.0135 35 1 8.6051 2.5981 1.4193 36 1 9.4020 1.3637 -0.5492 37 1 8.5756 -0.1442 -0.0896 38 1 7.2351 -0.0448 -2.1733 39 1 8.0614 1.4632 -2.6329 40 1 10.0201 -0.5115 -2.1418 41 1 11.2573 -0.8608 -4.5103 42 1 10.4306 -2.3688 -4.0511 43 1 10.7153 -3.2484 -9.8700 44 1 4.4104 -1.4476 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -74.684898 kcal Electronic energy + Delta-G solvation = -25659.834207 eV Core-core repulsion = 21704.720050 eV Total energy + Delta-G solvation = -3955.114157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.92130 -40.00436 -39.13176 -36.80380 -34.47403 -33.49051 -32.83659 -32.44338 -31.39108 -30.06172 -28.15528 -27.05470 -25.51208 -24.58423 -23.26874 -21.47286 -21.38284 -20.35910 -20.15491 -18.12141 -17.82524 -16.80517 -16.68636 -16.48390 -16.14449 -15.96212 -15.39415 -15.03695 -14.81930 -14.78882 -14.18002 -13.98101 -13.80178 -13.67339 -13.57811 -13.43655 -13.24010 -13.14509 -12.91355 -12.59903 -12.41917 -12.23440 -12.13845 -11.67529 -11.55541 -11.28985 -11.08337 -11.03477 -10.76901 -10.29075 -10.12246 -9.82292 -9.51149 -9.38719 -9.09383 -8.95631 -8.91773 -8.24590 -6.51660 -6.23175 -3.93893 0.99041 1.68862 2.43729 2.77903 3.00101 3.07603 3.09165 3.20336 3.26806 3.31161 3.66593 4.12058 4.18803 4.28627 4.43430 4.50397 4.57832 4.70558 4.89158 5.02263 5.03879 5.06821 5.11211 5.12043 5.20275 5.22535 5.28078 5.35835 5.39660 5.55597 5.60248 5.62743 5.73250 5.83804 5.87214 5.91152 5.98328 6.11356 6.15392 6.56721 6.62666 7.15483 7.58298 7.66932 7.92592 8.33882 8.58901 9.22203 10.84301 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.001898 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.642730 B =14746.650656 C =16175.881030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.163 4.163 4 C -0.233 4.233 5 C 0.591 3.409 6 O -0.534 6.534 7 N -0.723 5.723 8 C 0.147 3.853 9 H 0.095 0.905 10 C -0.162 4.162 11 C -0.140 4.140 12 C 0.120 3.880 13 N -0.740 5.740 14 C 0.530 3.470 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.022 3.978 27 O -0.172 6.172 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.398 0.602 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 5.511 25.535 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.183 4.183 4 C -0.237 4.237 5 C 0.378 3.622 6 O -0.411 6.411 7 N -0.375 5.375 8 C 0.042 3.958 9 H 0.113 0.887 10 C -0.221 4.221 11 C -0.178 4.178 12 C -0.004 4.004 13 N -0.395 5.395 14 C 0.316 3.684 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.048 4.048 27 O -0.067 6.067 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.177 0.823 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.705 6.633 24.202 29.085 hybrid contribution 2.721 -1.484 0.699 3.177 sum -11.984 5.149 24.901 28.110 Atomic orbital electron populations 1.20352 0.84558 1.04248 1.03940 1.22364 0.94237 0.83555 1.06110 1.22481 0.89903 0.99754 1.06138 1.21482 0.94734 0.93279 1.14241 1.17249 0.82174 0.87092 0.75649 1.90791 1.87088 1.13623 1.49613 1.45950 1.05372 1.10138 1.76084 1.20909 0.82707 0.94985 0.97182 0.88709 1.22168 1.02247 1.01845 0.95800 1.22133 0.98953 1.01357 0.95332 1.21261 0.90587 0.96505 0.92041 1.46000 1.23937 1.57879 1.11718 1.20329 0.87799 0.79244 0.81007 1.90714 1.34095 1.53896 1.60298 1.23532 0.99286 1.01657 1.05917 1.85428 1.29890 1.70456 0.97671 1.22906 1.06676 1.39693 0.99072 0.90867 1.25002 0.97322 0.96000 0.95329 1.70028 1.32899 1.43577 1.03747 0.86110 0.81470 0.79333 0.78532 1.19624 1.20564 1.20556 1.24408 0.84425 0.95328 1.00663 1.83740 1.16424 1.35582 1.70979 0.89743 0.90332 0.89116 0.82335 0.76772 0.91848 0.92332 0.91285 0.89267 0.90510 0.91685 0.91472 0.76841 0.89216 0.89247 0.92218 0.77253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.40 36.01 0.37 0.03 16 2 C -0.01 -0.12 7.28 -35.73 -0.26 -0.38 16 3 C -0.16 -1.59 10.90 -37.46 -0.41 -1.99 16 4 C -0.23 -2.33 6.31 -103.28 -0.65 -2.98 16 5 C 0.59 6.59 7.78 -12.54 -0.10 6.49 16 6 O -0.53 -7.91 16.65 5.27 0.09 -7.82 16 7 N -0.72 -5.76 4.52 -54.89 -0.25 -6.00 16 8 C 0.15 1.13 2.57 -67.93 -0.17 0.96 16 9 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 10 C -0.16 -1.08 9.48 37.16 0.35 -0.73 16 11 C -0.14 -0.91 4.87 -26.73 -0.13 -1.04 16 12 C 0.12 1.29 5.56 -4.04 -0.02 1.27 16 13 N -0.74 -9.16 5.56 -60.30 -0.33 -9.50 16 14 C 0.53 9.70 7.85 -10.98 -0.09 9.61 16 15 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 16 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.02 0.17 11.61 30.07 0.35 0.52 16 27 O -0.17 -1.51 10.52 7.64 0.08 -1.43 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.40 2.15 7.57 -40.82 -0.31 1.84 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.76 7.75 -51.93 -0.40 0.35 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 3.61 8.47 -40.82 -0.35 3.26 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.21 0.77 7.47 -52.48 -0.39 0.37 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -38.82 396.12 -7.66 -46.48 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.46 Total: 0.92 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.34 Total: -3.97 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.15 Total: -40.90 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.26 Total: -20.91 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.82 -7.66 -46.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.207 kcal (2) G-P(sol) polarization free energy of solvation -38.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds