Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34181 * 125.43841 * 2 1 4 4 C 1.47012 * 105.95354 * 179.97438 * 3 2 1 5 5 C 1.47382 * 127.19117 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99937 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99755 * 180.27474 * 5 4 3 8 8 C 1.46505 * 119.99724 * 179.72668 * 7 5 4 9 9 H 1.09000 * 109.46989 * 324.99747 * 8 7 5 10 10 C 1.52996 * 109.47130 * 85.00158 * 8 7 5 11 11 C 1.52998 * 109.47085 * 205.00369 * 8 7 5 12 12 C 1.53004 * 109.47475 * 64.99994 * 11 8 7 13 13 N 1.46498 * 109.47473 * 180.02562 * 12 11 8 14 14 C 1.34773 * 120.00043 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00130 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99941 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47226 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00114 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99850 * 359.97438 * 18 17 16 20 20 C 1.38791 * 120.00219 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99999 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00343 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46942 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47575 * 119.99492 * 22 20 18 25 25 H 1.48501 * 109.46963 * 239.99563 * 22 20 18 26 26 C 1.36413 * 105.61884 * 0.26362 * 4 3 2 27 27 O 1.33656 * 108.39770 * 359.57324 * 26 4 3 28 28 H 1.08994 * 109.47036 * 90.00154 * 1 2 3 29 29 H 1.08998 * 109.46779 * 210.00171 * 1 2 3 30 30 H 1.09003 * 109.46661 * 329.99780 * 1 2 3 31 31 H 1.08000 * 127.02068 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00483 * 359.73101 * 7 5 4 33 33 H 1.08998 * 109.47099 * 300.00036 * 10 8 7 34 34 H 1.09002 * 109.46807 * 60.00065 * 10 8 7 35 35 H 1.09003 * 109.47061 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47475 * 185.00182 * 11 8 7 37 37 H 1.09001 * 109.47293 * 305.00106 * 11 8 7 38 38 H 1.09000 * 109.46933 * 300.00037 * 12 11 8 39 39 H 1.08992 * 109.47030 * 59.99820 * 12 11 8 40 40 H 0.97001 * 119.99562 * 359.97438 * 13 12 11 41 41 H 1.09000 * 109.47249 * 300.00060 * 16 14 13 42 42 H 1.09006 * 109.46907 * 59.99928 * 16 14 13 43 43 H 0.96996 * 120.00279 * 180.02562 * 21 20 18 44 44 H 1.08005 * 125.80470 * 179.71597 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8320 2.6266 0.0000 7 7 6.1068 0.8074 -0.0046 8 6 7.3309 1.6123 -0.0109 9 1 7.1693 2.5147 -0.6005 10 6 7.6945 1.9988 1.4241 11 6 8.4725 0.7996 -0.6251 12 6 8.1646 0.5195 -2.0974 13 7 9.2574 -0.2592 -2.6853 14 6 9.2033 -0.6242 -3.9816 15 8 8.2498 -0.3084 -4.6612 16 6 10.3277 -1.4248 -4.5865 17 16 9.9634 -1.7563 -6.3282 18 6 11.3981 -2.6783 -6.7708 19 1 12.1635 -2.8730 -6.0340 20 6 11.5453 -3.1536 -8.0665 21 7 10.6127 -2.9160 -8.9646 22 14 13.0660 -4.1318 -8.5356 23 1 13.9560 -4.2601 -7.3538 24 1 12.6616 -5.4830 -9.0003 25 1 13.7895 -3.4294 -9.6257 26 6 3.5790 -0.7582 -0.0051 27 8 2.2853 -1.0936 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9596 2.1230 -0.0004 32 1 6.1631 -0.1610 -0.0040 33 1 6.8813 2.5778 1.8615 34 1 7.8561 1.0963 2.0135 35 1 8.6051 2.5981 1.4193 36 1 9.4020 1.3637 -0.5492 37 1 8.5756 -0.1442 -0.0896 38 1 7.2351 -0.0448 -2.1733 39 1 8.0614 1.4632 -2.6329 40 1 10.0201 -0.5115 -2.1418 41 1 11.2573 -0.8608 -4.5103 42 1 10.4306 -2.3688 -4.0511 43 1 10.7153 -3.2484 -9.8700 44 1 4.4104 -1.4476 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -103.781379 kcal Electronic energy + Delta-G solvation = -25661.095925 eV Core-core repulsion = 21704.720050 eV Total energy + Delta-G solvation = -3956.375875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.57795 -40.88938 -40.44771 -37.68407 -35.61106 -34.58159 -34.18644 -33.49861 -32.21740 -31.19622 -29.20888 -27.65347 -27.57862 -25.33581 -24.12417 -22.20004 -22.13797 -21.56937 -20.92780 -19.83312 -18.70402 -17.78319 -17.59199 -17.35815 -17.24147 -16.95600 -16.87726 -16.60869 -15.95861 -15.68996 -15.57999 -15.12257 -14.80409 -14.48070 -14.45314 -14.40212 -14.02855 -13.82382 -13.79506 -13.60818 -13.54873 -13.15566 -13.02677 -12.91540 -12.69591 -12.63668 -12.42962 -12.39734 -11.94167 -11.69928 -11.18444 -11.15757 -10.96474 -10.87502 -10.26146 -10.23384 -10.08038 -9.57137 -8.66631 -8.34522 -6.12664 0.31242 0.99834 1.27862 1.41903 1.48166 1.58854 1.62172 1.86019 2.10490 2.25621 2.29350 2.29968 2.99814 3.32423 3.55768 3.63099 3.74289 3.81194 4.00102 4.04368 4.09169 4.32003 4.37409 4.43381 4.46505 4.52622 4.52747 4.62520 4.70705 4.72406 4.80747 4.86116 4.89196 5.02686 5.08256 5.13779 5.31168 5.36700 5.42470 5.43598 5.48242 5.98095 6.20423 6.47772 6.53699 7.06971 7.16304 7.27158 8.74929 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.001898 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.642730 B =14746.650656 C =16175.881030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.195 4.195 4 C -0.266 4.266 5 C 0.587 3.413 6 O -0.583 6.583 7 N -0.709 5.709 8 C 0.145 3.855 9 H 0.067 0.933 10 C -0.155 4.155 11 C -0.121 4.121 12 C 0.119 3.881 13 N -0.709 5.709 14 C 0.531 3.469 15 O -0.570 6.570 16 C -0.128 4.128 17 S -0.158 6.158 18 C -0.544 4.544 19 H 0.085 0.915 20 C 0.011 3.989 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.041 3.959 27 O -0.179 6.179 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.153 0.847 32 H 0.413 0.587 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.420 0.580 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 3.588 27.869 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.215 4.215 4 C -0.271 4.271 5 C 0.376 3.624 6 O -0.465 6.465 7 N -0.361 5.361 8 C 0.040 3.960 9 H 0.085 0.915 10 C -0.213 4.213 11 C -0.159 4.159 12 C -0.005 4.005 13 N -0.363 5.363 14 C 0.317 3.683 15 O -0.448 6.448 16 C -0.279 4.279 17 S 0.069 5.931 18 C -0.692 4.692 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.178 1.178 24 H -0.200 1.200 25 H -0.201 1.201 26 C -0.029 4.029 27 O -0.074 6.074 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.171 0.829 32 H 0.250 0.750 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.258 0.742 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.667 4.681 26.609 29.840 hybrid contribution 2.052 -0.837 0.083 2.218 sum -10.615 3.844 26.692 28.981 Atomic orbital electron populations 1.20531 0.82147 1.05586 1.04839 1.22920 0.95582 0.82893 1.04593 1.22643 0.90613 1.00219 1.07985 1.21572 0.94434 0.94483 1.16606 1.17503 0.83295 0.86626 0.75010 1.90756 1.87806 1.15656 1.52242 1.45868 1.04644 1.10966 1.74643 1.20938 0.82878 0.94306 0.97835 0.91509 1.22098 1.01930 1.02608 0.94659 1.22044 0.98922 1.02954 0.91952 1.21377 0.89788 0.94907 0.94455 1.45677 1.24859 1.56112 1.09701 1.20123 0.86636 0.79049 0.82541 1.90707 1.35892 1.56155 1.62061 1.23372 1.00631 1.03498 1.00448 1.85647 1.31421 1.71105 1.04885 1.23241 1.06670 1.39524 0.99721 0.89720 1.26153 1.00898 0.97079 0.95219 1.70197 1.35392 1.45035 1.04271 0.84889 0.76966 0.77395 0.78590 1.17840 1.19970 1.20090 1.25089 0.84899 0.94980 0.97919 1.83772 1.16945 1.35827 1.70890 0.88940 0.89022 0.87747 0.82916 0.74993 0.94253 0.90351 0.89812 0.87225 0.87348 0.92437 0.93784 0.74244 0.87133 0.86837 0.92042 0.73395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.40 71.24 0.74 0.12 16 2 C -0.01 -0.19 7.28 24.76 0.18 -0.01 16 3 C -0.20 -3.99 10.90 23.65 0.26 -3.74 16 4 C -0.27 -5.42 6.31 -18.99 -0.12 -5.54 16 5 C 0.59 13.51 7.78 86.65 0.67 14.18 16 6 O -0.58 -18.53 16.65 -4.07 -0.07 -18.60 16 7 N -0.71 -10.55 4.52 -445.84 -2.02 -12.57 16 8 C 0.15 2.04 2.57 44.99 0.12 2.15 16 9 H 0.07 1.35 7.58 -2.39 -0.02 1.34 16 10 C -0.15 -1.76 9.48 71.98 0.68 -1.07 16 11 C -0.12 -1.16 4.87 30.59 0.15 -1.01 16 12 C 0.12 2.33 5.56 86.38 0.48 2.81 16 13 N -0.71 -15.55 5.56 -463.07 -2.57 -18.13 16 14 C 0.53 18.78 7.85 87.66 0.69 19.47 16 15 O -0.57 -26.36 15.86 -3.02 -0.05 -26.40 16 16 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 17 S -0.16 -8.69 20.57 -56.49 -1.16 -9.85 16 18 C -0.54 -30.68 9.50 67.95 0.65 -30.04 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.62 5.49 84.85 0.47 1.09 16 21 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 22 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.04 0.57 11.61 67.39 0.78 1.36 16 27 O -0.18 -2.95 10.52 4.41 0.05 -2.90 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 32 H 0.41 3.43 7.57 -92.71 -0.70 2.73 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 1.26 7.75 -2.39 -0.02 1.24 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 5.71 8.47 -92.71 -0.79 4.92 16 41 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.25 1.05 7.47 -2.91 -0.02 1.03 16 Total: -1.00 -90.34 396.12 2.22 -88.12 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.46 Total: 15.49 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 6.18 Total: -4.65 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -4.30 Total: -86.39 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.07 Total: -47.91 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -90.34 2.22 -88.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.658 kcal (2) G-P(sol) polarization free energy of solvation -90.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds