Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34176 * 127.02259 * 2 1 4 4 O 1.34217 * 109.12237 * 179.97438 * 3 2 1 5 5 C 1.33645 * 110.91082 * 0.02562 * 4 3 2 6 6 C 1.36420 * 108.40003 * 359.97438 * 5 4 3 7 7 C 1.47377 * 127.19579 * 180.26038 * 6 5 4 8 8 O 1.21610 * 120.00101 * 179.68494 * 7 6 5 9 9 N 1.34776 * 119.99797 * 359.68843 * 7 6 5 10 10 C 1.46497 * 119.99913 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47568 * 324.99759 * 10 9 7 12 12 C 1.52993 * 109.47374 * 84.99947 * 10 9 7 13 13 C 1.53007 * 109.47259 * 204.99898 * 10 9 7 14 14 C 1.52996 * 109.47003 * 64.99943 * 13 10 9 15 15 N 1.46497 * 109.47051 * 180.02562 * 14 13 10 16 16 C 1.34785 * 120.00210 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99682 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00205 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.47041 * 180.02562 * 18 16 15 20 20 C 1.76197 * 99.99775 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00169 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00045 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00118 * 179.97438 * 22 20 19 24 24 Si 1.86791 * 119.99730 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47480 * 89.99736 * 24 22 20 26 26 H 1.48498 * 109.47308 * 210.00081 * 24 22 20 27 27 H 1.48502 * 109.47196 * 329.99871 * 24 22 20 28 28 H 1.09005 * 109.46836 * 270.03405 * 1 2 3 29 29 H 1.08993 * 109.47466 * 30.04005 * 1 2 3 30 30 H 1.09007 * 109.47005 * 150.04322 * 1 2 3 31 31 H 1.07996 * 125.43931 * 359.94910 * 3 2 1 32 32 H 1.08007 * 125.80119 * 180.02562 * 5 4 3 33 33 H 0.97006 * 120.00401 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47229 * 60.00118 * 12 10 9 35 35 H 1.09002 * 109.47463 * 180.02562 * 12 10 9 36 36 H 1.09007 * 109.47129 * 299.99822 * 12 10 9 37 37 H 1.08998 * 109.47357 * 184.99834 * 13 10 9 38 38 H 1.08999 * 109.46739 * 304.99988 * 13 10 9 39 39 H 1.08999 * 109.47498 * 300.00157 * 14 13 10 40 40 H 1.09003 * 109.47331 * 59.99896 * 14 13 10 41 41 H 0.96998 * 120.00130 * 359.97438 * 15 14 13 42 42 H 1.08999 * 109.47200 * 300.00788 * 18 16 15 43 43 H 1.08999 * 109.46617 * 60.00419 * 18 16 15 44 44 H 0.97003 * 120.00140 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6623 -0.6759 0.0004 6 6 2.3922 -1.1739 0.0003 7 6 1.9913 -2.5921 0.0054 8 8 0.8125 -2.8907 0.0104 9 7 2.9312 -3.5580 0.0046 10 6 2.5327 -4.9677 0.0103 11 1 1.6261 -5.0867 0.6036 12 6 2.2675 -5.4285 -1.4243 13 6 3.6544 -5.8124 0.6181 14 6 3.8351 -5.4369 2.0902 15 7 4.9095 -6.2452 2.6720 16 6 5.2477 -6.0852 3.9669 17 8 4.6622 -5.2724 4.6505 18 6 6.3525 -6.9171 4.5655 19 16 6.5663 -6.4728 6.3071 20 6 7.8798 -7.5638 6.7420 21 1 8.2934 -8.2330 6.0021 22 6 8.3831 -7.5630 8.0356 23 7 9.3639 -8.3784 8.3607 24 14 7.6673 -6.4060 9.3154 25 1 6.5449 -7.0782 10.0180 26 1 8.7197 -6.0427 10.2981 27 1 7.1682 -5.1770 8.6477 28 1 -0.3633 0.0006 1.0277 29 1 -0.3634 0.8895 -0.5144 30 1 -0.3633 -0.8904 -0.5132 31 1 1.9895 2.1010 -0.0008 32 1 4.5703 -1.2608 0.0011 33 1 3.8716 -3.3198 0.0003 34 1 3.1741 -5.3097 -2.0176 35 1 1.9705 -6.4773 -1.4201 36 1 1.4683 -4.8268 -1.8573 37 1 3.3962 -6.8686 0.5416 38 1 4.5830 -5.6254 0.0788 39 1 4.0933 -4.3808 2.1668 40 1 2.9065 -5.6239 2.6295 41 1 5.3775 -6.8956 2.1253 42 1 6.0941 -7.9733 4.4893 43 1 7.2809 -6.7304 4.0258 44 1 9.7159 -8.3776 9.2646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075679079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -74.823097 kcal Electronic energy + Delta-G solvation = -25931.164123 eV Core-core repulsion = 21976.043974 eV Total energy + Delta-G solvation = -3955.120150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.94079 -40.05035 -39.25231 -36.88713 -34.57749 -34.16842 -32.48585 -32.44609 -30.66457 -29.94472 -28.25675 -27.56341 -25.63730 -24.55011 -23.34161 -21.63521 -20.79127 -20.58080 -20.33119 -18.44470 -17.87320 -16.79702 -16.58100 -16.48113 -16.15133 -16.00656 -15.49096 -15.20701 -14.99860 -14.90121 -14.33388 -13.92816 -13.84427 -13.78185 -13.63748 -13.40577 -13.34998 -12.91336 -12.84339 -12.81126 -12.42839 -12.31310 -11.86740 -11.74904 -11.64260 -11.34597 -11.27472 -11.02124 -10.62459 -10.26770 -9.92551 -9.87422 -9.59439 -9.45597 -9.07053 -9.04930 -8.99524 -8.52066 -6.93975 -6.30646 -4.02572 0.96069 1.66676 2.53125 2.73219 2.75757 2.94015 3.03931 3.26935 3.32735 3.49451 3.61581 4.11166 4.21717 4.31643 4.37386 4.44590 4.61087 4.66995 4.73528 4.89302 5.02215 5.04127 5.04832 5.08442 5.21437 5.30824 5.32236 5.40651 5.45536 5.55227 5.57258 5.65857 5.68615 5.74775 5.78062 5.84384 5.97971 6.09283 6.13559 6.46314 6.56571 7.11889 7.55491 7.89264 7.92353 8.39630 8.45215 9.15541 10.78495 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002037 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.137993 B =13742.732656 C =14949.494780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.132 4.132 3 C -0.046 4.046 4 O -0.171 6.171 5 C 0.025 3.975 6 C -0.236 4.236 7 C 0.591 3.409 8 O -0.531 6.531 9 N -0.724 5.724 10 C 0.147 3.853 11 H 0.095 0.905 12 C -0.162 4.162 13 C -0.140 4.140 14 C 0.121 3.879 15 N -0.738 5.738 16 C 0.529 3.471 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.208 0.792 32 H 0.210 0.790 33 H 0.398 0.602 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 13.261 -24.663 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.112 4.112 4 O -0.065 6.065 5 C -0.046 4.046 6 C -0.241 4.241 7 C 0.379 3.621 8 O -0.409 6.409 9 N -0.376 5.376 10 C 0.043 3.957 11 H 0.113 0.887 12 C -0.221 4.221 13 C -0.178 4.178 14 C -0.004 4.004 15 N -0.393 5.393 16 C 0.315 3.685 17 O -0.392 6.392 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.224 0.776 32 H 0.227 0.773 33 H 0.232 0.768 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.897 14.524 -23.367 31.287 hybrid contribution 1.301 -0.987 -0.333 1.666 sum -13.595 13.538 -23.700 30.492 Atomic orbital electron populations 1.20240 0.88265 1.03126 1.02733 1.21430 0.97335 0.90333 1.04304 1.23751 0.79601 0.99799 1.08079 1.83795 1.29731 1.22279 1.70715 1.24434 0.98755 0.81292 1.00103 1.21415 0.93419 0.94270 1.14986 1.17226 0.85536 0.83695 0.75675 1.90771 1.17270 1.83245 1.49578 1.45960 1.09398 1.06108 1.76151 1.20898 0.98400 0.79199 0.97223 0.88721 1.22168 1.02260 1.01855 0.95781 1.22138 0.99237 1.01193 0.95259 1.21272 0.91177 0.95689 0.92216 1.45964 1.38708 1.42941 1.11701 1.20304 0.83840 0.83189 0.81165 1.90712 1.53161 1.35323 1.60045 1.23278 0.99276 1.02440 1.02479 1.84818 1.48546 1.54566 1.03656 1.22311 1.19726 1.24312 1.00573 0.89382 1.24718 0.93927 0.95051 0.97656 1.69937 1.24980 1.36372 1.20355 0.86730 0.79652 0.83231 0.82213 1.19197 1.19932 1.15933 0.91064 0.91721 0.89986 0.77565 0.77323 0.76803 0.92326 0.91284 0.91841 0.89218 0.90456 0.91644 0.91435 0.76663 0.88485 0.88472 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.00 36.01 0.36 -0.35 16 2 C -0.13 -1.20 6.37 -102.49 -0.65 -1.85 16 3 C -0.05 -0.33 11.96 29.30 0.35 0.02 16 4 O -0.17 -1.35 10.52 7.67 0.08 -1.27 16 5 C 0.02 0.17 11.61 30.08 0.35 0.52 16 6 C -0.24 -2.21 6.31 -103.27 -0.65 -2.87 16 7 C 0.59 6.14 7.78 -12.54 -0.10 6.04 16 8 O -0.53 -7.24 15.07 5.27 0.08 -7.16 16 9 N -0.72 -5.31 4.52 -54.90 -0.25 -5.55 16 10 C 0.15 1.05 2.57 -67.93 -0.17 0.87 16 11 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 12 C -0.16 -1.01 9.48 37.15 0.35 -0.65 16 13 C -0.14 -0.83 4.87 -26.73 -0.13 -0.96 16 14 C 0.12 1.20 5.56 -4.05 -0.02 1.18 16 15 N -0.74 -8.52 5.56 -60.30 -0.33 -8.85 16 16 C 0.53 9.09 7.85 -10.98 -0.09 9.01 16 17 O -0.52 -11.10 15.86 5.56 0.09 -11.01 16 18 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 19 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 20 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.41 13.97 55.49 0.78 -25.63 16 24 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.81 6.92 -51.93 -0.36 0.45 16 31 H 0.21 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.21 0.64 7.47 -52.48 -0.39 0.25 16 33 H 0.40 1.93 7.57 -40.82 -0.31 1.62 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.40 3.34 8.47 -40.82 -0.35 2.99 16 42 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -37.94 390.40 -6.78 -44.72 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.43 Total: 0.51 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 0.03 Total: -3.09 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.19 Total: -40.04 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.25 Total: -19.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.94 -6.78 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.100 kcal (2) G-P(sol) polarization free energy of solvation -37.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds