Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34176 * 127.02259 * 2 1 4 4 O 1.34217 * 109.12237 * 179.97438 * 3 2 1 5 5 C 1.33645 * 110.91082 * 0.02562 * 4 3 2 6 6 C 1.36420 * 108.40003 * 359.97438 * 5 4 3 7 7 C 1.47377 * 127.19579 * 180.26038 * 6 5 4 8 8 O 1.21610 * 120.00101 * 179.68494 * 7 6 5 9 9 N 1.34776 * 119.99797 * 359.68843 * 7 6 5 10 10 C 1.46497 * 119.99913 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47568 * 324.99759 * 10 9 7 12 12 C 1.52993 * 109.47374 * 84.99947 * 10 9 7 13 13 C 1.53007 * 109.47259 * 204.99898 * 10 9 7 14 14 C 1.52996 * 109.47003 * 64.99943 * 13 10 9 15 15 N 1.46497 * 109.47051 * 180.02562 * 14 13 10 16 16 C 1.34785 * 120.00210 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99682 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00205 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.47041 * 180.02562 * 18 16 15 20 20 C 1.76197 * 99.99775 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00169 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00045 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00118 * 179.97438 * 22 20 19 24 24 Si 1.86791 * 119.99730 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47480 * 89.99736 * 24 22 20 26 26 H 1.48498 * 109.47308 * 210.00081 * 24 22 20 27 27 H 1.48502 * 109.47196 * 329.99871 * 24 22 20 28 28 H 1.09005 * 109.46836 * 270.03405 * 1 2 3 29 29 H 1.08993 * 109.47466 * 30.04005 * 1 2 3 30 30 H 1.09007 * 109.47005 * 150.04322 * 1 2 3 31 31 H 1.07996 * 125.43931 * 359.94910 * 3 2 1 32 32 H 1.08007 * 125.80119 * 180.02562 * 5 4 3 33 33 H 0.97006 * 120.00401 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47229 * 60.00118 * 12 10 9 35 35 H 1.09002 * 109.47463 * 180.02562 * 12 10 9 36 36 H 1.09007 * 109.47129 * 299.99822 * 12 10 9 37 37 H 1.08998 * 109.47357 * 184.99834 * 13 10 9 38 38 H 1.08999 * 109.46739 * 304.99988 * 13 10 9 39 39 H 1.08999 * 109.47498 * 300.00157 * 14 13 10 40 40 H 1.09003 * 109.47331 * 59.99896 * 14 13 10 41 41 H 0.96998 * 120.00130 * 359.97438 * 15 14 13 42 42 H 1.08999 * 109.47200 * 300.00788 * 18 16 15 43 43 H 1.08999 * 109.46617 * 60.00419 * 18 16 15 44 44 H 0.97003 * 120.00140 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6623 -0.6759 0.0004 6 6 2.3922 -1.1739 0.0003 7 6 1.9913 -2.5921 0.0054 8 8 0.8125 -2.8907 0.0104 9 7 2.9312 -3.5580 0.0046 10 6 2.5327 -4.9677 0.0103 11 1 1.6261 -5.0867 0.6036 12 6 2.2675 -5.4285 -1.4243 13 6 3.6544 -5.8124 0.6181 14 6 3.8351 -5.4369 2.0902 15 7 4.9095 -6.2452 2.6720 16 6 5.2477 -6.0852 3.9669 17 8 4.6622 -5.2724 4.6505 18 6 6.3525 -6.9171 4.5655 19 16 6.5663 -6.4728 6.3071 20 6 7.8798 -7.5638 6.7420 21 1 8.2934 -8.2330 6.0021 22 6 8.3831 -7.5630 8.0356 23 7 9.3639 -8.3784 8.3607 24 14 7.6673 -6.4060 9.3154 25 1 6.5449 -7.0782 10.0180 26 1 8.7197 -6.0427 10.2981 27 1 7.1682 -5.1770 8.6477 28 1 -0.3633 0.0006 1.0277 29 1 -0.3634 0.8895 -0.5144 30 1 -0.3633 -0.8904 -0.5132 31 1 1.9895 2.1010 -0.0008 32 1 4.5703 -1.2608 0.0011 33 1 3.8716 -3.3198 0.0003 34 1 3.1741 -5.3097 -2.0176 35 1 1.9705 -6.4773 -1.4201 36 1 1.4683 -4.8268 -1.8573 37 1 3.3962 -6.8686 0.5416 38 1 4.5830 -5.6254 0.0788 39 1 4.0933 -4.3808 2.1668 40 1 2.9065 -5.6239 2.6295 41 1 5.3775 -6.8956 2.1253 42 1 6.0941 -7.9733 4.4893 43 1 7.2809 -6.7304 4.0258 44 1 9.7159 -8.3776 9.2646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075679079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -103.294140 kcal Electronic energy + Delta-G solvation = -25932.398720 eV Core-core repulsion = 21976.043974 eV Total energy + Delta-G solvation = -3956.354747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.51764 -40.88191 -40.45819 -37.68981 -35.62921 -34.79951 -34.66862 -33.22545 -31.67980 -30.74119 -29.22381 -28.16274 -27.83958 -25.24122 -24.11849 -22.29068 -21.74727 -21.29388 -21.14615 -19.89137 -19.02062 -17.84561 -17.49535 -17.30092 -17.17496 -17.02433 -16.79519 -16.61823 -15.90112 -15.69707 -15.59889 -15.21605 -14.95240 -14.77343 -14.51580 -14.45030 -14.24115 -14.02715 -13.63069 -13.59868 -13.44454 -13.34504 -13.02455 -12.98244 -12.71927 -12.47848 -12.42424 -12.37601 -11.94130 -11.85483 -11.17242 -11.07703 -11.00637 -10.61095 -10.52514 -10.20683 -10.06605 -9.62360 -8.99472 -8.51481 -6.22003 0.35769 0.99619 1.06400 1.31212 1.46878 1.55980 1.57149 2.00493 2.17814 2.21827 2.26231 2.31962 2.72432 2.86794 3.59368 3.63896 3.73804 3.77375 3.99059 4.04203 4.11487 4.25463 4.33478 4.42934 4.46837 4.48736 4.49119 4.62218 4.76906 4.80741 4.87856 4.93182 4.99949 5.04450 5.07080 5.13836 5.31335 5.40892 5.47096 5.52044 5.71022 5.99105 6.11845 6.48599 6.51863 6.94006 7.20460 7.21611 8.60676 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.002037 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.137993 B =13742.732656 C =14949.494780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.168 4.168 3 C -0.036 4.036 4 O -0.177 6.177 5 C 0.042 3.958 6 C -0.272 4.272 7 C 0.585 3.415 8 O -0.576 6.576 9 N -0.711 5.711 10 C 0.147 3.853 11 H 0.068 0.932 12 C -0.155 4.155 13 C -0.122 4.122 14 C 0.120 3.880 15 N -0.709 5.709 16 C 0.532 3.468 17 O -0.567 6.567 18 C -0.110 4.110 19 S -0.182 6.182 20 C -0.527 4.527 21 H 0.064 0.936 22 C 0.045 3.955 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.264 1.264 26 H -0.259 1.259 27 H -0.237 1.237 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.241 0.759 32 H 0.247 0.753 33 H 0.412 0.588 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.420 0.580 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.615 13.918 -26.331 32.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.170 4.170 3 C -0.101 4.101 4 O -0.071 6.071 5 C -0.028 4.028 6 C -0.276 4.276 7 C 0.374 3.626 8 O -0.457 6.457 9 N -0.363 5.363 10 C 0.042 3.958 11 H 0.086 0.914 12 C -0.213 4.213 13 C -0.160 4.160 14 C -0.004 4.004 15 N -0.363 5.363 16 C 0.318 3.682 17 O -0.445 6.445 18 C -0.261 4.261 19 S 0.045 5.955 20 C -0.674 4.674 21 H 0.083 0.917 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.736 3.264 25 H -0.189 1.189 26 H -0.184 1.184 27 H -0.161 1.161 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.257 0.743 32 H 0.263 0.737 33 H 0.249 0.751 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.258 0.742 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.057 15.147 -25.095 32.509 hybrid contribution 1.040 -1.230 0.021 1.611 sum -13.017 13.917 -25.074 31.494 Atomic orbital electron populations 1.20165 0.88412 1.03055 1.02230 1.21717 0.97830 0.91247 1.06160 1.24325 0.78949 1.00727 1.06135 1.83826 1.30061 1.22672 1.70542 1.25076 0.99105 0.81086 0.97535 1.21554 0.94828 0.93933 1.17300 1.17503 0.85317 0.84636 0.75118 1.90742 1.19113 1.83941 1.51920 1.45881 1.09737 1.05850 1.74878 1.20901 0.97952 0.79228 0.97702 0.91417 1.22097 1.02279 1.02121 0.94828 1.22051 1.00011 1.01828 0.92144 1.21384 0.89419 0.95175 0.94440 1.45679 1.38218 1.42589 1.09801 1.20009 0.83153 0.82430 0.82627 1.90706 1.54747 1.37420 1.61643 1.23272 1.01221 1.03718 0.97895 1.84786 1.47082 1.54120 1.09529 1.22452 1.20431 1.24279 1.00259 0.91745 1.25553 0.94336 0.96509 0.99649 1.70011 1.26233 1.37892 1.21250 0.85879 0.79292 0.81259 0.80017 1.18894 1.18358 1.16120 0.91809 0.89333 0.92440 0.74336 0.73678 0.75101 0.90517 0.89948 0.94221 0.87347 0.87485 0.92244 0.93554 0.74229 0.86776 0.86443 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.00 71.24 0.71 -0.71 16 2 C -0.17 -3.04 6.37 -18.49 -0.12 -3.16 16 3 C -0.04 -0.46 11.96 66.89 0.80 0.34 16 4 O -0.18 -2.44 10.52 4.52 0.05 -2.39 16 5 C 0.04 0.51 11.61 67.40 0.78 1.29 16 6 C -0.27 -5.02 6.31 -18.99 -0.12 -5.14 16 7 C 0.59 12.40 7.78 86.65 0.67 13.07 16 8 O -0.58 -16.81 15.07 -4.06 -0.06 -16.87 16 9 N -0.71 -9.56 4.52 -445.85 -2.02 -11.57 16 10 C 0.15 1.87 2.57 44.99 0.12 1.99 16 11 H 0.07 1.27 7.58 -2.39 -0.02 1.25 16 12 C -0.16 -1.64 9.48 71.98 0.68 -0.95 16 13 C -0.12 -1.03 4.87 30.60 0.15 -0.88 16 14 C 0.12 2.12 5.56 86.38 0.48 2.60 16 15 N -0.71 -14.15 5.56 -463.06 -2.57 -16.73 16 16 C 0.53 17.26 7.85 87.66 0.69 17.94 16 17 O -0.57 -23.89 15.86 -3.03 -0.05 -23.93 16 18 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 19 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 20 C -0.53 -30.21 10.04 67.96 0.68 -29.53 16 21 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 22 C 0.04 2.62 5.50 84.86 0.47 3.09 16 23 N -0.92 -55.27 13.97 21.65 0.30 -54.97 16 24 Si 0.91 44.86 27.74 68.60 1.90 46.76 16 25 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.26 6.92 -2.38 -0.02 1.25 16 31 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.25 0.68 7.47 -2.91 -0.02 0.65 16 33 H 0.41 2.92 7.57 -92.70 -0.70 2.22 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 38 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.06 1.17 7.75 -2.39 -0.02 1.15 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.42 5.15 8.47 -92.71 -0.79 4.37 16 42 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 43 H 0.12 3.74 8.14 -2.40 -0.02 3.72 16 44 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -86.22 390.40 2.45 -83.76 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -0.49 Total: 9.56 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 6.43 Total: -3.53 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -4.29 Total: -83.27 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.06 Total: -43.19 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -86.22 2.45 -83.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.531 kcal (2) G-P(sol) polarization free energy of solvation -86.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds