Wall clock time and date at job start Sat Apr 11 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34181 * 125.44183 * 2 1 4 4 C 1.47017 * 105.95577 * 180.02562 * 3 2 1 5 5 C 1.47381 * 127.19386 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99816 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00222 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27565 * 7 5 4 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 C 1.53003 * 109.47301 * 179.97438 * 9 8 7 11 11 H 1.08992 * 109.47039 * 305.00167 * 10 9 8 12 12 C 1.53001 * 109.46949 * 184.99469 * 10 9 8 13 13 N 1.46503 * 109.46803 * 64.99966 * 10 9 8 14 14 C 1.34775 * 119.99699 * 204.99825 * 13 10 9 15 15 O 1.21281 * 120.00101 * 0.02562 * 14 13 10 16 16 C 1.50703 * 120.00148 * 180.02562 * 14 13 10 17 17 S 1.80996 * 109.47281 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00008 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99971 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00103 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00041 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99711 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47061 * 90.00243 * 22 20 18 24 24 H 1.48503 * 109.46910 * 209.99554 * 22 20 18 25 25 H 1.48500 * 109.47381 * 329.99891 * 22 20 18 26 26 C 1.36419 * 105.61515 * 0.26396 * 4 3 2 27 27 O 1.33651 * 108.39648 * 359.57312 * 26 4 3 28 28 H 1.09002 * 109.46994 * 89.99468 * 1 2 3 29 29 H 1.09001 * 109.47726 * 209.99689 * 1 2 3 30 30 H 1.09004 * 109.47330 * 330.00036 * 1 2 3 31 31 H 1.07998 * 127.01886 * 0.02704 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 34 34 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 35 35 H 1.09004 * 109.47066 * 299.99732 * 9 8 7 36 36 H 1.09000 * 109.47665 * 59.99541 * 9 8 7 37 37 H 1.09003 * 109.46585 * 60.00658 * 12 10 9 38 38 H 1.09008 * 109.46576 * 179.97438 * 12 10 9 39 39 H 1.08992 * 109.47820 * 300.00220 * 12 10 9 40 40 H 0.97002 * 120.00479 * 25.00003 * 13 10 9 41 41 H 1.09008 * 109.46987 * 300.00114 * 16 14 13 42 42 H 1.08991 * 109.46864 * 59.99809 * 16 14 13 43 43 H 0.97004 * 120.00304 * 179.97438 * 21 20 18 44 44 H 1.07997 * 125.79811 * 179.73976 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4123 -0.0003 6 8 4.8320 2.6264 0.0000 7 7 6.1068 0.8072 -0.0015 8 6 7.3309 1.6120 0.0048 9 6 8.5495 0.6869 0.0089 10 6 9.8279 1.5274 0.0150 11 1 9.8112 2.2203 -0.8262 12 6 11.0440 0.6068 -0.1066 13 7 9.9102 2.2822 1.2679 14 6 10.6198 3.4268 1.3197 15 8 11.1900 3.8321 0.3289 16 6 10.7049 4.2030 2.6086 17 16 11.7203 5.6801 2.3575 18 6 11.6511 6.3775 3.9741 19 1 11.0903 5.8816 4.7525 20 6 12.3173 7.5642 4.2472 21 7 12.2652 8.0854 5.4547 22 14 13.2868 8.4222 2.9005 23 1 12.4012 9.3741 2.1829 24 1 14.4236 9.1628 3.5042 25 1 13.8062 7.4120 1.9440 26 6 3.5789 -0.7583 -0.0070 27 8 2.2851 -1.0935 -0.0006 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9595 2.1229 0.0004 32 1 6.1630 -0.1611 -0.0022 33 1 7.3561 2.2421 -0.8843 34 1 7.3484 2.2398 0.8957 35 1 8.5243 0.0568 0.8980 36 1 8.5321 0.0590 -0.8819 37 1 10.9828 0.0453 -1.0388 38 1 11.9548 1.2057 -0.1027 39 1 11.0608 -0.0861 0.7346 40 1 9.4539 1.9582 2.0602 41 1 9.7036 4.4996 2.9209 42 1 11.1559 3.5785 3.3796 43 1 12.7311 8.9145 5.6457 44 1 4.4102 -1.4477 -0.0132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076270366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:19 Heat of formation + Delta-G solvation = -73.586035 kcal Electronic energy + Delta-G solvation = -25584.300991 eV Core-core repulsion = 21629.234485 eV Total energy + Delta-G solvation = -3955.066507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.02128 -39.90410 -39.37610 -36.69891 -34.76018 -33.55038 -32.65072 -32.41670 -31.79633 -29.50492 -28.58788 -27.11397 -25.59203 -24.81904 -22.90861 -21.73811 -21.48838 -20.45867 -20.05681 -18.25178 -17.83441 -16.81965 -16.68171 -16.62257 -16.30421 -15.95219 -15.49276 -15.08371 -14.93715 -14.81166 -14.28240 -13.78300 -13.71066 -13.70223 -13.60174 -13.50934 -13.37238 -13.23833 -12.98888 -12.77393 -12.31825 -12.28276 -12.05579 -11.84470 -11.60476 -11.24408 -11.16755 -10.98515 -10.57945 -10.33752 -10.21164 -9.83652 -9.50220 -9.45782 -9.05865 -9.02225 -8.96366 -8.47854 -6.89199 -6.26655 -3.98148 0.89128 1.60649 2.32722 2.73198 2.78096 2.98337 3.03845 3.31328 3.36261 3.52365 3.66840 4.01761 4.20674 4.35279 4.38213 4.43826 4.58941 4.66739 4.77979 4.81904 4.93796 5.02051 5.12414 5.14170 5.15873 5.20472 5.28169 5.31753 5.33698 5.49589 5.51593 5.57772 5.70616 5.78920 5.89688 5.91445 6.03195 6.03914 6.09981 6.52354 6.56045 7.10505 7.60283 7.89354 7.96386 8.44072 8.50058 9.19564 10.82596 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.001887 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.147130 B =14836.096679 C =16141.459219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.014 4.014 3 C -0.163 4.163 4 C -0.229 4.229 5 C 0.583 3.417 6 O -0.527 6.527 7 N -0.728 5.728 8 C 0.117 3.883 9 C -0.138 4.138 10 C 0.147 3.853 11 H 0.092 0.908 12 C -0.163 4.163 13 N -0.734 5.734 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.016 3.984 27 O -0.173 6.173 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.160 0.840 32 H 0.396 0.604 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.398 0.602 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.270 0.730 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.827 -25.391 -12.044 34.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.182 4.182 4 C -0.233 4.233 5 C 0.370 3.630 6 O -0.404 6.404 7 N -0.381 5.381 8 C -0.006 4.006 9 C -0.176 4.176 10 C 0.041 3.959 11 H 0.110 0.890 12 C -0.221 4.221 13 N -0.389 5.389 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.276 4.276 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.054 4.054 27 O -0.069 6.069 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.178 0.822 32 H 0.230 0.770 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -18.985 -23.938 -13.580 33.435 hybrid contribution -0.202 -0.423 1.294 1.376 sum -19.187 -24.362 -12.287 33.356 Atomic orbital electron populations 1.20356 0.84493 1.04416 1.03841 1.22364 0.94225 0.83497 1.06158 1.22536 0.89914 0.99903 1.05873 1.21520 0.94764 0.93287 1.13760 1.17292 0.82185 0.87175 0.76298 1.90847 1.87001 1.13612 1.48913 1.45827 1.05667 1.10076 1.76493 1.21443 0.81756 0.93775 1.03601 1.22114 0.93315 0.98405 1.03758 1.20786 0.93359 0.93267 0.88452 0.89005 1.22173 0.98750 0.99504 1.01690 1.46092 1.54537 1.25031 1.13217 1.20270 0.77641 0.80019 0.90181 1.90697 1.44075 1.67927 1.36544 1.23288 1.05479 1.01324 0.97481 1.84771 1.64762 1.23049 1.18937 1.22322 1.38283 1.11789 0.94499 0.89402 1.24715 0.95194 0.95837 0.95575 1.69938 1.41988 1.20033 1.19750 0.86732 0.80654 0.81644 0.82797 1.19194 1.19965 1.15938 1.24359 0.84414 0.95244 1.01369 1.83724 1.16411 1.35618 1.71129 0.89834 0.90303 0.88989 0.82222 0.76973 0.90882 0.90650 0.90511 0.89658 0.91822 0.91452 0.92450 0.76741 0.88498 0.88506 0.91962 0.77268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.40 36.00 0.37 0.10 16 2 C -0.01 -0.10 7.28 -35.74 -0.26 -0.36 16 3 C -0.16 -1.47 10.90 -37.45 -0.41 -1.88 16 4 C -0.23 -2.08 6.31 -103.28 -0.65 -2.74 16 5 C 0.58 6.52 7.81 -12.54 -0.10 6.42 16 6 O -0.53 -8.46 16.98 5.27 0.09 -8.37 16 7 N -0.73 -5.52 5.55 -61.40 -0.34 -5.86 16 8 C 0.12 1.03 5.56 -4.04 -0.02 1.01 16 9 C -0.14 -0.84 4.87 -26.73 -0.13 -0.97 16 10 C 0.15 1.43 2.58 -67.93 -0.17 1.25 16 11 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 12 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 13 N -0.73 -8.69 4.53 -53.80 -0.24 -8.93 16 14 C 0.53 9.25 7.81 -10.98 -0.09 9.16 16 15 O -0.52 -10.95 15.52 5.56 0.09 -10.86 16 16 C -0.13 -2.43 6.16 36.01 0.22 -2.21 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.85 13.97 55.49 0.78 -26.08 16 22 Si 0.86 22.07 27.74 -169.99 -4.72 17.35 16 23 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 26 C 0.02 0.10 11.61 30.08 0.35 0.45 16 27 O -0.17 -1.24 10.52 7.65 0.08 -1.16 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.40 1.49 7.44 -40.82 -0.30 1.18 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 41 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.21 0.27 7.47 -52.49 -0.39 -0.12 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -39.14 393.44 -7.15 -46.29 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.49 Total: 0.37 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.32 Total: -3.05 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.19 Total: -40.87 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.26 Total: -20.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.35 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.14 -7.15 -46.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076270366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.301 kcal (2) G-P(sol) polarization free energy of solvation -39.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds