Wall clock time and date at job start Sat Apr 11 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.55047 * 2 1 4 4 N 1.46502 * 109.47269 * 60.12739 * 3 2 1 5 5 C 1.34772 * 119.99716 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00281 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99501 * 179.97438 * 5 4 3 8 8 O 1.42905 * 109.46971 * 180.02562 * 7 5 4 9 9 C 1.36225 * 117.00172 * 179.97438 * 8 7 5 10 10 C 1.38668 * 122.58808 * 179.73707 * 9 8 7 11 11 C 1.33432 * 114.88579 * 179.76788 * 10 9 8 12 12 S 1.75875 * 109.65585 * 0.47477 * 11 10 9 13 13 C 1.33629 * 122.58225 * 0.03284 * 9 8 7 14 14 C 1.53290 * 109.51186 * 239.87277 * 2 1 3 15 15 N 1.47232 * 108.40798 * 292.38068 * 14 2 1 16 16 C 1.36930 * 121.03328 * 129.46021 * 15 14 2 17 17 H 1.08002 * 120.00530 * 206.18598 * 16 15 14 18 18 C 1.38816 * 119.99608 * 26.18827 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.88476 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.88547 * 18 16 15 21 21 H 1.48493 * 109.47161 * 89.99376 * 20 18 16 22 22 H 1.48497 * 109.47448 * 210.00216 * 20 18 16 23 23 H 1.48503 * 109.46954 * 330.00010 * 20 18 16 24 24 C 1.47154 * 117.98230 * 309.48797 * 15 14 2 25 25 C 1.53298 * 108.41825 * 50.51870 * 24 15 14 26 26 O 1.42959 * 109.51115 * 120.12528 * 2 1 3 27 27 H 1.09000 * 109.47604 * 299.87595 * 1 2 3 28 28 H 1.09004 * 109.47201 * 59.87360 * 1 2 3 29 29 H 1.09000 * 109.47333 * 179.87598 * 1 2 3 30 30 H 1.09002 * 109.46970 * 180.12437 * 3 2 1 31 31 H 1.08999 * 109.47186 * 300.12520 * 3 2 1 32 32 H 0.97000 * 120.00089 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47291 * 299.99677 * 7 5 4 34 34 H 1.08999 * 109.47236 * 60.00311 * 7 5 4 35 35 H 1.08000 * 122.55478 * 359.97438 * 10 9 8 36 36 H 1.07999 * 125.17124 * 180.18888 * 11 10 9 37 37 H 1.07994 * 125.20398 * 0.02562 * 13 9 8 38 38 H 1.09001 * 109.68414 * 52.09887 * 14 2 1 39 39 H 1.09001 * 109.68139 * 172.65251 * 14 2 1 40 40 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.68310 * 290.77188 * 24 15 14 42 42 H 1.09005 * 109.67869 * 170.25970 * 24 15 14 43 43 H 1.09001 * 109.51044 * 67.59999 * 25 24 15 44 44 H 1.09000 * 109.51036 * 187.70217 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.5571 2.1322 1.1977 5 6 1.8854 3.4218 1.4114 6 8 2.5818 4.0108 0.6120 7 6 1.3862 4.1321 2.6432 8 8 1.8645 5.4788 2.6433 9 6 1.5009 6.2642 3.6953 10 6 1.9038 7.5857 3.8150 11 6 1.4547 8.2131 4.9036 12 16 0.4778 7.1088 5.8623 13 6 0.7333 5.8189 4.6943 14 6 2.0420 -0.7252 -1.2497 15 7 1.6959 -2.1516 -1.1340 16 6 1.0613 -2.8090 -2.1539 17 1 0.4490 -3.6729 -1.9412 18 6 1.2049 -2.3650 -3.4612 19 7 2.1856 -1.5448 -3.7738 20 14 0.0060 -2.9315 -4.7770 21 1 -1.1377 -1.9869 -4.8445 22 1 0.6954 -2.9691 -6.0918 23 1 -0.4927 -4.2893 -4.4407 24 6 2.0522 -2.8497 0.1114 25 6 1.5396 -2.0210 1.2949 26 8 2.0075 -0.6763 1.1655 27 1 -0.3634 0.5119 0.8911 28 1 -0.3634 0.5158 -0.8889 29 1 -0.3634 -1.0276 -0.0022 30 1 3.1320 1.4403 -0.0022 31 1 1.6775 1.9568 -0.8888 32 1 0.9998 1.6613 1.8369 33 1 0.2962 4.1342 2.6448 34 1 1.7499 3.6170 3.5323 35 1 2.5303 8.0710 3.0813 36 1 1.6636 9.2414 5.1595 37 1 0.3315 4.8196 4.7729 38 1 1.5704 -0.3042 -2.1376 39 1 3.1240 -0.6147 -1.3208 40 1 2.2857 -1.2342 -4.6873 41 1 3.1352 -2.9532 0.1774 42 1 1.5878 -3.8358 0.1252 43 1 0.4496 -2.0284 1.2995 44 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108343863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:51 Heat of formation + Delta-G solvation = -67.745929 kcal Electronic energy + Delta-G solvation = -27275.792995 eV Core-core repulsion = 23320.979734 eV Total energy + Delta-G solvation = -3954.813261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42233 -40.75070 -39.90253 -36.93785 -36.51620 -35.93678 -33.36644 -33.19012 -30.23987 -29.96026 -29.53832 -28.00228 -26.90188 -24.99476 -24.46264 -22.92609 -21.71807 -20.71203 -20.33828 -19.31570 -18.95671 -18.25320 -17.84995 -17.54422 -17.30424 -16.81296 -16.62942 -16.10262 -15.77858 -15.55964 -15.44064 -15.24796 -14.98197 -14.72350 -14.59675 -14.23987 -14.11666 -13.69003 -13.63492 -13.37604 -13.17398 -12.92316 -12.80826 -12.79503 -12.52755 -12.45015 -12.13101 -11.96514 -11.95512 -11.85066 -11.82611 -11.19985 -11.00115 -10.74985 -10.50262 -10.20798 -9.78189 -8.94879 -8.72358 -7.89897 -5.36678 0.03180 0.69428 1.02039 1.45749 1.46313 1.47412 1.55980 1.57793 1.73744 2.46813 2.66860 2.79706 3.24579 3.49160 3.58213 3.91354 3.96844 4.01464 4.06520 4.10650 4.11202 4.37178 4.42834 4.46238 4.47741 4.56531 4.63706 4.72027 4.79114 4.94131 4.96757 4.98153 5.04868 5.12509 5.21438 5.24328 5.28432 5.37212 5.53822 5.61624 6.17662 6.28941 6.36707 6.47719 7.06620 7.12612 7.76138 8.29993 9.15667 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.002060 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.956249 B =13587.497086 C =14065.483761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.095 3.905 3 C 0.151 3.849 4 N -0.697 5.697 5 C 0.510 3.490 6 O -0.576 6.576 7 C 0.050 3.950 8 O -0.311 6.311 9 C 0.092 3.908 10 C -0.169 4.169 11 C -0.178 4.178 12 S 0.143 5.857 13 C -0.330 4.330 14 C 0.165 3.835 15 N -0.607 5.607 16 C -0.257 4.257 17 H 0.074 0.926 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.284 1.284 22 H -0.300 1.300 23 H -0.266 1.266 24 C 0.100 3.900 25 C 0.053 3.947 26 O -0.384 6.384 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.419 0.581 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.200 0.800 37 H 0.187 0.813 38 H 0.067 0.933 39 H -0.008 1.008 40 H 0.250 0.750 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 14.121 22.324 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.054 3.946 3 C 0.026 3.974 4 N -0.351 5.351 5 C 0.297 3.703 6 O -0.455 6.455 7 C -0.028 4.028 8 O -0.226 6.226 9 C 0.036 3.964 10 C -0.200 4.200 11 C -0.313 4.313 12 S 0.404 5.596 13 C -0.465 4.465 14 C 0.039 3.961 15 N -0.331 5.331 16 C -0.387 4.387 17 H 0.092 0.908 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.795 3.205 21 H -0.210 1.210 22 H -0.227 1.227 23 H -0.191 1.191 24 C -0.025 4.025 25 C -0.024 4.024 26 O -0.303 6.303 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.257 0.743 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.167 0.833 36 H 0.217 0.783 37 H 0.204 0.796 38 H 0.085 0.915 39 H 0.010 0.990 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.095 14.786 22.918 28.181 hybrid contribution 0.396 -1.102 -2.697 2.940 sum -6.699 13.684 20.221 25.318 Atomic orbital electron populations 1.22125 0.93723 1.02978 1.02298 1.22164 0.94776 0.90287 0.87386 1.21049 0.98839 0.89533 0.87992 1.45558 1.53401 1.10823 1.25300 1.20664 0.80128 0.82080 0.87476 1.90743 1.39322 1.66980 1.48417 1.22536 1.01875 0.81531 0.96837 1.86150 1.71477 1.22657 1.42273 1.18173 0.97830 0.91887 0.88464 1.19678 1.06254 0.92509 1.01574 1.25888 1.02634 1.05115 0.97680 1.84099 1.50684 1.01057 1.23772 1.25681 1.12731 1.06705 1.01405 1.21086 0.95402 0.84448 0.95213 1.44264 1.68620 1.05516 1.14678 1.19510 1.21164 1.11966 0.86055 0.90786 1.25798 0.98815 1.00825 0.99210 1.70181 1.31088 1.38531 1.18487 0.85277 0.78516 0.78500 0.78238 1.21031 1.22650 1.19101 1.21835 0.97007 0.96420 0.87224 1.23110 0.99192 0.81697 0.98401 1.87819 1.73297 1.26474 1.42729 0.89961 0.92707 0.91939 0.92718 0.90874 0.74278 0.85870 0.86072 0.83322 0.78318 0.79614 0.91497 0.99031 0.94099 0.97090 0.90991 0.91910 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 7.92 71.98 0.57 -4.13 16 2 C 0.10 3.35 0.76 -10.70 -0.01 3.34 16 3 C 0.15 5.05 4.82 86.38 0.42 5.47 16 4 N -0.70 -17.64 5.15 -463.05 -2.39 -20.03 16 5 C 0.51 14.21 7.91 87.66 0.69 14.90 16 6 O -0.58 -22.50 16.50 16.00 0.26 -22.23 16 7 C 0.05 0.94 5.35 71.24 0.38 1.32 16 8 O -0.31 -7.93 9.74 -77.09 -0.75 -8.68 16 9 C 0.09 1.89 6.64 21.33 0.14 2.03 16 10 C -0.17 -3.04 10.17 21.28 0.22 -2.82 16 11 C -0.18 -2.22 11.22 66.73 0.75 -1.47 16 12 S 0.14 1.73 23.34 -56.49 -1.32 0.41 16 13 C -0.33 -5.00 10.09 66.77 0.67 -4.33 16 14 C 0.17 7.82 4.12 86.34 0.36 8.17 16 15 N -0.61 -29.21 2.57 -697.33 -1.79 -31.00 16 16 C -0.26 -13.52 9.65 84.04 0.81 -12.71 16 17 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 18 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 19 N -0.94 -55.03 11.14 21.65 0.24 -54.79 16 20 Si 0.97 43.88 29.59 68.60 2.03 45.91 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 C 0.10 3.92 6.73 86.35 0.58 4.50 16 25 C 0.05 1.59 6.60 72.08 0.48 2.07 16 26 O -0.38 -12.65 9.97 -148.98 -1.49 -14.14 16 27 H 0.08 1.84 6.88 -2.39 -0.02 1.82 16 28 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 2.09 6.11 -2.39 -0.01 2.07 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.42 7.83 7.21 -92.71 -0.67 7.16 16 33 H 0.12 1.50 7.86 -2.39 -0.02 1.48 16 34 H 0.12 1.55 7.86 -2.39 -0.02 1.53 16 35 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 36 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.19 1.90 7.02 -2.91 -0.02 1.88 16 38 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.07 2.62 7.96 -2.38 -0.02 2.60 16 43 H 0.06 1.75 6.25 -2.39 -0.01 1.74 16 44 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -74.13 370.68 1.64 -72.49 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.36 Total: 18.07 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.48 Total: 13.98 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -3.94 Total: -105.82 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.97 Total: -45.05 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.32 Total: 0.41 kcal Total: -74.13 1.64 -72.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108343863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.749 kcal (2) G-P(sol) polarization free energy of solvation -74.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds