Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35787 * 117.00368 * 2 1 4 4 C 1.38019 * 123.46766 * 0.21606 * 3 2 1 5 5 C 1.33613 * 115.08182 * 180.29946 * 4 3 2 6 6 S 1.70573 * 111.14940 * 359.72188 * 5 4 3 7 7 C 1.37268 * 123.47208 * 180.02562 * 3 2 1 8 8 C 1.41723 * 125.47403 * 359.97438 * 7 3 2 9 9 O 1.21768 * 120.00248 * 359.71778 * 8 7 3 10 10 N 1.34785 * 119.99405 * 179.72295 * 8 7 3 11 11 C 1.46499 * 119.99349 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46950 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.50927 * 304.89659 * 12 11 10 14 14 C 1.53288 * 109.55566 * 184.77158 * 12 11 10 15 15 N 1.47148 * 108.38852 * 187.74536 * 14 12 11 16 16 C 1.36938 * 120.98705 * 230.55902 * 15 14 12 17 17 H 1.08001 * 119.99863 * 153.29877 * 16 15 14 18 18 C 1.38813 * 119.99808 * 333.30057 * 16 15 14 19 19 N 1.31618 * 119.99580 * 343.54885 * 18 16 15 20 20 Si 1.86796 * 119.99837 * 163.55016 * 18 16 15 21 21 H 1.48500 * 109.47585 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46899 * 120.00079 * 20 18 16 23 23 H 1.48505 * 109.47044 * 239.99720 * 20 18 16 24 24 C 1.47159 * 118.03554 * 50.53264 * 15 14 12 25 25 C 1.53301 * 108.38149 * 309.47195 * 24 15 14 26 26 O 1.42952 * 109.22472 * 52.29798 * 25 24 15 27 27 H 1.09003 * 109.47515 * 300.00547 * 1 2 3 28 28 H 1.09000 * 109.47111 * 60.00157 * 1 2 3 29 29 H 1.09004 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.07995 * 122.45996 * 359.97438 * 4 3 2 31 31 H 1.08000 * 124.42479 * 179.69047 * 5 4 3 32 32 H 0.96994 * 119.99992 * 359.97438 * 10 8 7 33 33 H 1.08995 * 109.47594 * 59.99992 * 11 10 8 34 34 H 1.09003 * 109.47312 * 299.99328 * 11 10 8 35 35 H 1.08995 * 109.47084 * 180.10167 * 13 12 11 36 36 H 1.09004 * 109.47359 * 300.10180 * 13 12 11 37 37 H 1.08997 * 109.47160 * 60.10079 * 13 12 11 38 38 H 1.09001 * 109.68566 * 307.47086 * 14 12 11 39 39 H 1.09003 * 109.68257 * 67.98344 * 14 12 11 40 40 H 0.97005 * 119.99361 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.68793 * 189.74305 * 24 15 14 42 42 H 1.09006 * 109.67927 * 69.18579 * 24 15 14 43 43 H 1.08999 * 109.50973 * 172.22266 * 25 24 15 44 44 H 1.09001 * 109.50729 * 292.32081 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3652 2.4107 0.0043 5 6 2.1390 3.5000 -0.0027 6 16 3.7923 3.0804 -0.0077 7 6 3.4094 1.3645 -0.0005 8 6 4.3566 0.3103 -0.0006 9 8 3.9793 -0.8474 0.0050 10 7 5.6753 0.5893 -0.0068 11 6 6.6544 -0.5003 -0.0074 12 6 8.0683 0.0845 -0.0142 13 6 8.2207 1.0390 -1.2003 14 6 9.0922 -1.0499 -0.1351 15 7 10.4374 -0.4824 0.0481 16 6 11.4392 -0.7394 -0.8495 17 1 12.2457 -0.0323 -0.9756 18 6 11.4180 -1.9088 -1.5972 19 7 10.6430 -2.9085 -1.2334 20 14 12.4894 -2.0636 -3.1194 21 1 13.2612 -0.8095 -3.3112 22 1 13.4278 -3.2020 -2.9506 23 1 11.6305 -2.3021 -4.3071 24 6 10.6743 0.3700 1.2240 25 6 9.5732 1.4353 1.2786 26 8 8.2964 0.7967 1.2042 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2867 2.4660 0.0077 31 1 1.7663 4.5137 -0.0055 32 1 5.9758 1.5115 -0.0115 33 1 6.5116 -1.1168 -0.8949 34 1 6.5188 -1.1113 0.8851 35 1 9.2286 1.4538 -1.2056 36 1 8.0466 0.4953 -2.1289 37 1 7.4954 1.8477 -1.1113 38 1 8.9022 -1.7994 0.6332 39 1 9.0176 -1.5082 -1.1213 40 1 10.6279 -3.7255 -1.7561 41 1 11.6479 0.8525 1.1377 42 1 10.6435 -0.2364 2.1292 43 1 9.6491 1.9896 2.2140 44 1 9.6879 2.1207 0.4388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108356491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -70.327587 kcal Electronic energy + Delta-G solvation = -27949.907890 eV Core-core repulsion = 23994.982680 eV Total energy + Delta-G solvation = -3954.925210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44643 -40.78519 -39.83942 -36.96892 -36.51271 -35.91454 -33.34001 -33.18013 -31.23055 -29.57514 -28.42878 -27.94514 -27.01140 -25.50800 -24.96850 -23.13570 -22.19988 -20.74269 -20.38853 -19.75383 -18.91651 -18.00232 -17.42696 -17.26819 -16.95276 -16.75629 -16.41556 -16.11860 -15.98192 -15.73792 -15.57145 -15.24055 -14.96638 -14.72350 -14.64119 -14.38559 -14.10978 -13.69483 -13.45785 -13.35778 -13.17249 -12.93243 -12.80579 -12.56092 -12.50027 -12.42260 -12.10836 -12.02204 -11.96369 -11.92332 -11.83396 -11.19448 -11.04389 -10.75023 -10.49940 -10.24726 -9.77389 -9.07357 -8.70900 -7.88624 -5.36191 -0.51115 0.44023 0.84087 1.34183 1.45866 1.48029 1.58234 2.18116 2.25458 2.49244 2.52254 2.79290 3.26263 3.50229 3.71349 3.89804 4.00234 4.09642 4.10283 4.23761 4.31037 4.38756 4.42972 4.47358 4.55797 4.61618 4.65644 4.71341 4.72239 4.78949 4.87552 4.95455 5.04628 5.12351 5.12815 5.20871 5.34814 5.34882 5.53655 5.62611 6.27600 6.30369 6.37873 6.52068 7.07430 7.21103 7.76761 8.31418 9.17258 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002805 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.178917 B = 9980.789615 C =10624.112295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.311 6.311 3 C 0.184 3.816 4 C -0.224 4.224 5 C -0.170 4.170 6 S 0.260 5.740 7 C -0.378 4.378 8 C 0.586 3.414 9 O -0.579 6.579 10 N -0.710 5.710 11 C 0.152 3.848 12 C 0.094 3.906 13 C -0.153 4.153 14 C 0.170 3.830 15 N -0.607 5.607 16 C -0.257 4.257 17 H 0.075 0.925 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.102 3.898 25 C 0.051 3.949 26 O -0.387 6.387 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.181 0.819 31 H 0.217 0.783 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.074 0.926 38 H -0.008 1.008 39 H 0.067 0.933 40 H 0.250 0.750 41 H 0.074 0.926 42 H 0.012 0.988 43 H 0.119 0.881 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.180 19.091 2.205 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.223 6.223 3 C 0.122 3.878 4 C -0.256 4.256 5 C -0.308 4.308 6 S 0.525 5.475 7 C -0.498 4.498 8 C 0.377 3.623 9 O -0.462 6.462 10 N -0.363 5.363 11 C 0.027 3.973 12 C 0.053 3.947 13 C -0.210 4.210 14 C 0.043 3.957 15 N -0.331 5.331 16 C -0.387 4.387 17 H 0.093 0.907 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.218 1.218 24 C -0.024 4.024 25 C -0.026 4.026 26 O -0.306 6.306 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.198 0.802 31 H 0.234 0.766 32 H 0.244 0.756 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.010 0.990 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.030 0.970 43 H 0.136 0.864 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.114 18.772 2.280 26.887 hybrid contribution -0.459 -1.550 -0.772 1.791 sum -19.572 17.222 1.509 26.114 Atomic orbital electron populations 1.23489 0.75900 1.05601 1.03075 1.86302 1.23689 1.25526 1.86779 1.18789 0.90302 0.86499 0.92241 1.20240 1.03637 0.89490 1.12269 1.25607 0.97952 1.05318 1.01928 1.82936 1.04634 0.91988 1.67973 1.22749 0.95480 1.00137 1.31406 1.16039 0.82083 0.88045 0.76103 1.90827 1.80321 1.22428 1.52630 1.45703 1.04797 1.10190 1.75588 1.21001 0.85484 0.89292 1.01551 1.22179 0.93125 0.93615 0.85795 1.22110 1.02803 0.99175 0.96955 1.21009 0.83488 0.91367 0.99838 1.44255 1.06880 1.57393 1.24550 1.19548 1.03881 1.00848 1.14399 0.90687 1.25834 1.00854 0.94620 1.03400 1.70199 1.43956 1.04364 1.39793 0.85205 0.78054 0.77725 0.79461 1.18570 1.22247 1.21809 1.21830 0.98650 0.92892 0.88990 1.23140 0.82440 0.94018 1.02997 1.87840 1.35663 1.69289 1.37846 0.90630 0.90626 0.87301 0.80213 0.76607 0.75600 0.91174 0.92778 0.91474 0.92550 0.90709 0.99043 0.91516 0.94127 0.90741 0.97041 0.86355 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.94 113.37 1.13 1.32 16 2 O -0.31 -8.56 9.36 -74.41 -0.70 -9.25 16 3 C 0.18 4.52 6.70 21.99 0.15 4.67 16 4 C -0.22 -3.22 9.17 21.17 0.19 -3.03 16 5 C -0.17 -1.82 10.90 66.77 0.73 -1.09 16 6 S 0.26 4.23 22.00 -56.49 -1.24 2.99 16 7 C -0.38 -10.46 6.28 22.90 0.14 -10.31 16 8 C 0.59 21.10 7.59 85.10 0.65 21.75 16 9 O -0.58 -25.99 15.84 12.18 0.19 -25.79 16 10 N -0.71 -23.48 5.18 -472.01 -2.45 -25.92 16 11 C 0.15 5.88 4.85 86.38 0.42 6.30 16 12 C 0.09 3.67 0.78 -10.70 -0.01 3.67 16 13 C -0.15 -5.22 7.86 71.98 0.57 -4.66 16 14 C 0.17 8.45 4.11 86.35 0.35 8.80 16 15 N -0.61 -30.28 2.56 -697.53 -1.79 -32.07 16 16 C -0.26 -13.83 9.65 84.03 0.81 -13.02 16 17 H 0.08 3.87 7.88 -2.91 -0.02 3.84 16 18 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 19 N -0.94 -56.19 11.14 21.65 0.24 -55.95 16 20 Si 0.97 44.67 29.58 68.60 2.03 46.70 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 C 0.10 4.15 6.74 86.35 0.58 4.73 16 25 C 0.05 1.67 6.60 72.08 0.48 2.14 16 26 O -0.39 -14.31 10.17 -148.98 -1.52 -15.82 16 27 H 0.08 0.75 7.87 -2.39 -0.02 0.73 16 28 H 0.08 0.75 7.89 -2.39 -0.02 0.73 16 29 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.18 1.37 6.99 -2.91 -0.02 1.35 16 31 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.41 11.28 5.97 -92.71 -0.55 10.73 16 33 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.41 6.11 -2.39 -0.01 2.40 16 36 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.07 2.03 6.59 -2.39 -0.02 2.01 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.07 3.70 6.16 -2.39 -0.01 3.69 16 40 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 41 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 42 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.06 1.90 6.26 -2.39 -0.01 1.89 16 Total: -1.00 -78.80 366.33 1.86 -76.94 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.48 Total: 19.36 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.61 Total: 18.82 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -3.99 Total: -113.94 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.02 Total: -50.87 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.24 Total: 2.99 kcal Total: -78.80 1.86 -76.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108356491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.614 kcal (2) G-P(sol) polarization free energy of solvation -78.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds