Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38045 * 126.28976 * 2 1 4 4 C 1.47428 * 126.41413 * 359.71186 * 3 2 1 5 5 O 1.21603 * 120.00270 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.46979 * 180.02562 * 7 6 4 9 9 N 1.29904 * 124.85919 * 89.69631 * 8 7 6 10 10 C 1.36054 * 108.80326 * 179.89564 * 9 8 7 11 11 C 1.39592 * 133.80849 * 180.10060 * 10 9 8 12 12 C 1.37678 * 119.72881 * 180.26301 * 11 10 9 13 13 C 1.38715 * 120.42574 * 0.04356 * 12 11 10 14 14 C 1.37906 * 120.47602 * 359.95396 * 13 12 11 15 15 C 1.38672 * 119.87570 * 0.02562 * 14 13 12 16 16 O 1.34234 * 124.85265 * 270.00002 * 8 7 6 17 17 C 1.41290 * 107.17003 * 179.73433 * 3 2 1 18 18 N 1.30448 * 108.01917 * 0.02562 * 17 3 2 19 19 N 1.34259 * 126.29027 * 179.68749 * 2 1 3 20 20 C 1.46494 * 125.75336 * 0.23997 * 19 2 1 21 21 C 1.50700 * 109.47034 * 90.00525 * 20 19 2 22 22 H 1.08000 * 120.00118 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00281 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00059 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00448 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46800 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47298 * 119.99707 * 25 23 21 28 28 H 1.48498 * 109.46889 * 240.00117 * 25 23 21 29 29 H 1.08995 * 109.47029 * 90.02469 * 1 2 3 30 30 H 1.09001 * 109.47030 * 210.02410 * 1 2 3 31 31 H 1.09002 * 109.47083 * 330.02702 * 1 2 3 32 32 H 0.97000 * 120.00146 * 0.02562 * 6 4 3 33 33 H 1.09000 * 109.47456 * 299.99853 * 7 6 4 34 34 H 1.08993 * 109.47342 * 60.00310 * 7 6 4 35 35 H 1.07997 * 120.13290 * 0.30529 * 11 10 9 36 36 H 1.08005 * 119.78626 * 180.02562 * 12 11 10 37 37 H 1.08005 * 119.76470 * 179.97438 * 13 12 11 38 38 H 1.08005 * 120.06337 * 180.02562 * 14 13 12 39 39 H 1.07998 * 125.98994 * 179.97438 * 17 3 2 40 40 H 1.09003 * 109.46965 * 209.99756 * 20 19 2 41 41 H 1.09000 * 109.47680 * 330.00516 * 20 19 2 42 42 H 0.96997 * 120.00149 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0060 5 8 0.6996 2.7878 -0.0111 6 7 2.7999 3.5107 -0.0047 7 6 2.3643 4.9094 -0.0100 8 6 3.5716 5.8115 -0.0080 9 7 4.1737 6.2485 -1.0728 10 6 5.2171 7.0356 -0.6948 11 6 6.1874 7.7556 -1.3939 12 6 7.1386 8.4702 -0.7011 13 6 7.1391 8.4781 0.6861 14 6 6.1866 7.7715 1.3899 15 6 5.2207 7.0465 0.7083 16 8 4.1820 6.2736 1.0946 17 6 3.6591 0.6499 0.0063 18 7 3.6340 -0.6543 0.0092 19 7 2.3017 -1.0822 0.0059 20 6 1.8501 -2.4757 0.0085 21 6 1.7002 -2.9579 -1.4114 22 1 1.9190 -2.2926 -2.2335 23 6 1.2836 -4.2483 -1.6610 24 7 1.0177 -5.0587 -0.6599 25 14 1.0971 -4.8457 -3.4211 26 1 1.4547 -3.7492 -4.3565 27 1 1.9975 -6.0044 -3.6486 28 1 -0.3098 -5.2581 -3.6573 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 3.7461 3.2974 -0.0002 33 1 1.7694 5.1014 -0.9030 34 1 1.7621 5.1059 0.8769 35 1 6.1914 7.7526 -2.4739 36 1 7.8895 9.0279 -1.2411 37 1 7.8905 9.0420 1.2188 38 1 6.1930 7.7827 2.4698 39 1 4.5449 1.2677 0.0075 40 1 2.5830 -3.0942 0.5267 41 1 0.8897 -2.5456 0.5192 42 1 0.7250 -5.9666 -0.8354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119473825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = 50.144700 kcal Electronic energy + Delta-G solvation = -27357.808272 eV Core-core repulsion = 23304.955933 eV Total energy + Delta-G solvation = -4052.852340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -44.38479 -42.34143 -40.22532 -38.99135 -36.41622 -35.83145 -35.51049 -33.85335 -32.80192 -31.69101 -31.46495 -29.50175 -28.52203 -27.62365 -25.35578 -24.25770 -23.66689 -23.17414 -22.65930 -21.38719 -20.65067 -19.15640 -18.88220 -18.70716 -18.20753 -17.99086 -17.16391 -16.73032 -16.54077 -16.35484 -16.11830 -15.74603 -15.40891 -15.14224 -14.87785 -14.72282 -14.40908 -14.32097 -14.04392 -13.87162 -13.67199 -13.56977 -13.53234 -13.11434 -13.08736 -12.96620 -12.71110 -12.57862 -12.56404 -12.33391 -11.84058 -11.75766 -11.58478 -10.94673 -10.76530 -10.32316 -10.27936 -9.85853 -9.55468 -9.48970 -8.38420 -6.54419 -0.46445 0.19227 0.65056 1.10485 1.28872 1.31604 1.36043 1.38422 1.49571 1.66735 2.28027 2.32913 2.47766 2.61215 2.65542 2.93885 3.43500 3.67596 3.73401 3.82077 3.99158 4.07333 4.15972 4.22458 4.24012 4.31057 4.37776 4.49642 4.53998 4.64779 4.80498 4.83008 4.89389 5.02980 5.04907 5.11423 5.16875 5.23519 5.30972 5.37085 5.49256 5.63086 5.68618 5.74473 6.03487 6.40043 6.44409 6.54708 6.81474 7.16602 7.19987 8.69696 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.001966 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.046109 B =14235.548563 C =14595.585577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.150 3.850 3 C -0.331 4.331 4 C 0.617 3.383 5 O -0.570 6.570 6 N -0.717 5.717 7 C 0.224 3.776 8 C 0.231 3.769 9 N -0.479 5.479 10 C -0.016 4.016 11 C -0.074 4.074 12 C -0.111 4.111 13 C -0.077 4.077 14 C -0.104 4.104 15 C -0.010 4.010 16 O -0.216 6.216 17 C 0.078 3.922 18 N -0.336 5.336 19 N -0.337 5.337 20 C 0.266 3.734 21 C -0.554 4.554 22 H 0.051 0.949 23 C 0.023 3.977 24 N -0.916 5.916 25 Si 0.972 3.028 26 H -0.273 1.273 27 H -0.274 1.274 28 H -0.268 1.268 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.411 0.589 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.144 0.856 36 H 0.173 0.827 37 H 0.180 0.820 38 H 0.155 0.845 39 H 0.220 0.780 40 H 0.032 0.968 41 H 0.054 0.946 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.596 28.593 3.553 30.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.014 3.986 3 C -0.346 4.346 4 C 0.407 3.593 5 O -0.450 6.450 6 N -0.371 5.371 7 C 0.100 3.900 8 C 0.019 3.981 9 N -0.210 5.210 10 C -0.128 4.128 11 C -0.093 4.093 12 C -0.130 4.130 13 C -0.094 4.094 14 C -0.123 4.123 15 C -0.060 4.060 16 O -0.107 6.107 17 C -0.108 4.108 18 N -0.156 5.156 19 N -0.114 5.114 20 C 0.147 3.853 21 C -0.592 4.592 22 H 0.069 0.931 23 C -0.178 4.178 24 N -0.554 5.554 25 Si 0.796 3.204 26 H -0.198 1.198 27 H -0.199 1.199 28 H -0.193 1.193 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.247 0.753 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.162 0.838 36 H 0.190 0.810 37 H 0.197 0.803 38 H 0.173 0.827 39 H 0.236 0.764 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.206 27.226 3.019 29.233 hybrid contribution -0.045 -0.215 -0.121 0.251 sum 10.161 27.011 2.898 29.004 Atomic orbital electron populations 1.20591 0.85531 1.04276 1.04116 1.21994 0.96056 0.86542 0.93970 1.19816 0.93182 0.92773 1.28833 1.16921 0.84702 0.83394 0.74256 1.90709 1.17342 1.84420 1.52531 1.45439 1.10471 1.04134 1.77086 1.19630 0.86987 0.76626 1.06783 1.26263 0.96469 0.97040 0.78337 1.70627 1.07867 1.12802 1.29683 1.20339 0.97989 1.02152 0.92273 1.20704 0.92246 0.95118 1.01201 1.21552 0.98300 0.98402 0.94699 1.21601 0.97054 0.96503 0.94290 1.20378 0.92764 0.97381 1.01735 1.20880 0.91957 0.98305 0.94866 1.84502 1.36745 1.53390 1.36059 1.24426 0.97635 0.91670 0.97119 1.77102 0.98467 1.14312 1.25680 1.49118 1.03315 1.07838 1.51108 1.19399 0.95416 0.72268 0.98174 1.21414 1.47817 0.98446 0.91560 0.93054 1.25724 0.93862 0.95987 1.02225 1.69999 1.44882 1.07644 1.32881 0.85299 0.78459 0.78155 0.78534 1.19790 1.19899 1.19302 0.89718 0.90962 0.87622 0.75302 0.86413 0.86682 0.83803 0.81003 0.80273 0.82728 0.76383 0.95022 0.92873 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 9.56 71.24 0.68 -2.43 16 2 C 0.15 6.09 7.01 42.14 0.30 6.39 16 3 C -0.33 -11.63 6.13 -20.15 -0.12 -11.75 16 4 C 0.62 18.89 7.81 86.66 0.68 19.56 16 5 O -0.57 -19.78 14.84 -4.04 -0.06 -19.84 16 6 N -0.72 -16.45 5.54 -470.11 -2.60 -19.05 16 7 C 0.22 4.45 6.30 85.63 0.54 4.99 16 8 C 0.23 5.03 7.60 88.40 0.67 5.70 16 9 N -0.48 -11.73 11.34 -296.26 -3.36 -15.09 16 10 C -0.02 -0.35 7.24 39.32 0.28 -0.06 16 11 C -0.07 -1.12 10.10 22.46 0.23 -0.89 16 12 C -0.11 -0.93 10.02 22.25 0.22 -0.70 16 13 C -0.08 -0.56 10.03 22.31 0.22 -0.34 16 14 C -0.10 -1.31 10.06 22.29 0.22 -1.08 16 15 C -0.01 -0.20 7.43 22.88 0.17 -0.03 16 16 O -0.22 -4.74 10.77 -10.01 -0.11 -4.85 16 17 C 0.08 2.64 11.50 85.65 0.99 3.62 16 18 N -0.34 -14.54 12.50 -56.28 -0.70 -15.24 16 19 N -0.34 -15.51 3.56 -336.70 -1.20 -16.71 16 20 C 0.27 13.70 5.97 85.63 0.51 14.21 16 21 C -0.55 -30.56 9.39 25.60 0.24 -30.32 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.02 1.27 5.46 84.65 0.46 1.73 16 24 N -0.92 -51.16 13.29 21.45 0.28 -50.88 16 25 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.07 2.56 7.04 -2.39 -0.02 2.54 16 31 H 0.11 3.49 6.51 -2.39 -0.02 3.47 16 32 H 0.41 8.14 7.42 -92.71 -0.69 7.45 16 33 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.18 -0.06 8.06 -2.91 -0.02 -0.09 16 38 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.22 5.00 7.50 -2.91 -0.02 4.98 16 40 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 2.72 7.01 -2.39 -0.02 2.71 16 42 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -72.36 370.70 0.97 -71.39 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.40 Total: 16.82 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.29 Total: 8.60 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -7.58 Total: -116.98 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.17 Total: -24.69 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.36 0.97 -71.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119473825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.537 kcal (2) G-P(sol) polarization free energy of solvation -72.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds