Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38132 * 119.96594 * 2 1 4 4 C 1.38851 * 119.93082 * 180.27847 * 3 2 1 5 5 N 1.39928 * 120.07242 * 179.70199 * 4 3 2 6 6 C 1.34778 * 119.99553 * 215.34313 * 5 4 3 7 7 O 1.21283 * 120.00527 * 5.64445 * 6 5 4 8 8 C 1.50709 * 119.99423 * 185.63850 * 6 5 4 9 9 C 1.52997 * 109.46749 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47060 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99613 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00072 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00378 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99824 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47324 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46858 * 120.00187 * 14 12 10 17 17 H 1.48503 * 109.47050 * 239.99966 * 14 12 10 18 18 C 1.38892 * 119.85805 * 359.72413 * 4 3 2 19 19 C 1.38093 * 119.93188 * 359.97438 * 18 4 3 20 20 C 1.38257 * 119.96534 * 179.74836 * 2 1 3 21 21 S 1.76200 * 119.92909 * 0.02562 * 20 2 1 22 22 O 1.42102 * 106.40287 * 182.77277 * 21 20 2 23 23 O 1.42096 * 106.40110 * 49.85359 * 21 20 2 24 24 N 1.65597 * 107.22048 * 296.31107 * 21 20 2 25 25 C 1.46504 * 119.99896 * 99.58334 * 24 21 20 26 26 C 1.46499 * 120.00374 * 279.59195 * 24 21 20 27 27 H 1.08997 * 109.46936 * 264.80546 * 1 2 3 28 28 H 1.08998 * 109.47315 * 24.81232 * 1 2 3 29 29 H 1.09004 * 109.46701 * 144.80936 * 1 2 3 30 30 H 1.08003 * 120.03574 * 359.97438 * 3 2 1 31 31 H 0.96998 * 119.99801 * 35.34015 * 5 4 3 32 32 H 1.09001 * 109.47155 * 300.00010 * 8 6 5 33 33 H 1.09003 * 109.46630 * 60.00187 * 8 6 5 34 34 H 1.09001 * 109.46968 * 299.99718 * 9 8 6 35 35 H 1.08992 * 109.47533 * 59.99988 * 9 8 6 36 36 H 0.96999 * 120.00187 * 180.02562 * 13 12 10 37 37 H 1.07997 * 120.03616 * 179.97438 * 18 4 3 38 38 H 1.07999 * 119.96800 * 180.02562 * 19 18 4 39 39 H 1.09004 * 109.47238 * 95.45522 * 25 24 21 40 40 H 1.08995 * 109.47161 * 215.45801 * 25 24 21 41 41 H 1.09006 * 109.46825 * 335.45729 * 25 24 21 42 42 H 1.09000 * 109.47450 * 89.99368 * 26 24 21 43 43 H 1.09003 * 109.47112 * 209.99695 * 26 24 21 44 44 H 1.09001 * 109.46582 * 329.99342 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1967 0.0000 4 6 3.5855 1.1958 -0.0058 5 7 4.2873 2.4063 -0.0122 6 6 5.4462 2.5097 -0.6926 7 8 5.8290 1.5883 -1.3820 8 6 6.2662 3.7705 -0.5967 9 6 7.5223 3.6286 -1.4586 10 6 8.3427 4.8891 -1.3623 11 1 8.0019 5.7095 -0.7481 12 6 9.5282 4.9949 -2.0582 13 7 9.9429 3.9960 -2.8065 14 14 10.5447 6.5577 -1.9394 15 1 9.8642 7.5236 -1.0400 16 1 11.8872 6.2345 -1.3930 17 1 10.6911 7.1568 -3.2902 18 6 4.2762 -0.0092 -0.0059 19 6 3.5807 -1.2021 0.0004 20 6 2.1976 -1.1978 0.0053 21 16 1.3138 -2.7221 0.0113 22 8 2.2904 -3.7519 0.0819 23 8 0.3526 -2.6327 -1.0315 24 7 0.4608 -2.7886 1.4291 25 6 -0.9637 -2.4465 1.4437 26 6 1.1306 -3.1893 2.6689 27 1 -0.3633 -0.0930 1.0234 28 1 -0.3634 0.9328 -0.4312 29 1 -0.3633 -0.8399 -0.5923 30 1 1.6570 2.1320 -0.0004 31 1 3.9399 3.1709 0.4731 32 1 5.6762 4.6156 -0.9515 33 1 6.5542 3.9386 0.4411 34 1 8.1125 2.7835 -1.1042 35 1 7.2340 3.4607 -2.4962 36 1 10.7772 4.0704 -3.2958 37 1 5.3562 -0.0132 -0.0108 38 1 4.1172 -2.1394 0.0008 39 1 -1.5569 -3.3567 1.3551 40 1 -1.2070 -1.9438 2.3797 41 1 -1.1869 -1.7844 0.6070 42 1 1.5344 -2.3070 3.1653 43 1 0.4135 -3.6803 3.3269 44 1 1.9421 -3.8790 2.4367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121158554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -80.106387 kcal Electronic energy + Delta-G solvation = -27096.286685 eV Core-core repulsion = 23140.937435 eV Total energy + Delta-G solvation = -3955.349250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.54374 -38.74992 -37.61757 -36.61216 -36.05954 -35.00926 -33.61672 -32.76243 -31.32381 -30.01041 -28.73401 -27.12458 -25.98531 -25.04538 -23.34242 -22.64071 -21.24683 -19.86082 -19.23884 -18.25841 -17.56855 -17.44772 -17.01043 -16.55787 -15.90874 -15.56394 -15.19563 -14.92832 -14.60838 -14.59513 -14.46938 -14.15060 -13.72832 -13.60282 -13.33879 -13.28456 -13.16842 -13.02820 -12.74996 -12.35319 -12.28558 -12.22536 -12.06179 -11.94953 -11.63696 -11.54084 -11.30120 -11.01915 -10.95783 -10.66244 -10.53043 -10.10535 -9.83623 -9.52659 -9.39961 -9.17101 -8.99547 -8.48374 -8.39779 -6.04117 -4.09375 0.12255 0.65397 1.15797 2.59135 2.83986 3.07382 3.27641 3.35177 3.37499 3.37945 3.55788 4.08685 4.34376 4.40437 4.44085 4.57037 4.86717 4.91684 4.93859 5.06722 5.09352 5.14540 5.22783 5.31139 5.31184 5.33937 5.39474 5.46937 5.50983 5.56908 5.75208 5.88680 5.99515 6.01579 6.02142 6.11480 6.17519 6.35841 6.69737 6.82450 7.43234 7.64179 7.72038 7.95970 8.23781 8.39817 8.98412 9.54975 11.06756 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030319 B = 0.002074 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.283695 B =13499.872723 C =13840.800566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.038 3.962 3 C -0.177 4.177 4 C 0.223 3.777 5 N -0.689 5.689 6 C 0.509 3.491 7 O -0.504 6.504 8 C -0.128 4.128 9 C 0.036 3.964 10 C -0.529 4.529 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.150 4.150 19 C 0.003 3.997 20 C -0.706 4.706 21 S 2.699 3.301 22 O -0.958 6.958 23 O -0.956 6.956 24 N -1.005 6.005 25 C 0.077 3.923 26 C 0.084 3.916 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.412 0.588 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.673 -10.770 13.769 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.036 3.964 3 C -0.199 4.199 4 C 0.126 3.874 5 N -0.335 5.335 6 C 0.299 3.701 7 O -0.376 6.376 8 C -0.168 4.168 9 C -0.002 4.002 10 C -0.568 4.568 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.171 4.171 19 C -0.017 4.017 20 C -0.795 4.795 21 S 2.791 3.209 22 O -0.948 6.948 23 O -0.947 6.947 24 N -0.845 5.845 25 C -0.068 4.068 26 C -0.062 4.062 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.151 0.849 31 H 0.249 0.751 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.156 -12.060 12.512 29.758 hybrid contribution 0.761 2.108 0.566 2.312 sum -23.395 -9.952 13.078 28.590 Atomic orbital electron populations 1.21861 0.90844 1.06548 1.03794 1.19161 0.95276 0.91267 0.90703 1.20868 0.92235 0.98415 1.08351 1.18137 0.90914 0.86738 0.91581 1.44211 1.24451 1.12234 1.52625 1.21997 0.79439 0.91410 0.77273 1.90723 1.68713 1.40914 1.37264 1.21946 0.98865 0.92129 1.03859 1.18940 0.89063 0.97487 0.94712 1.21204 1.05886 1.00852 1.28822 0.92460 1.25033 0.97682 0.96463 0.95208 1.70000 1.22044 1.31026 1.29573 0.86512 0.80177 0.83275 0.77846 1.19741 1.20957 1.20957 1.21313 1.01647 0.90728 1.03422 1.20802 0.91493 0.99089 0.90294 1.30460 1.06218 1.19021 1.23815 1.01763 0.72995 0.73769 0.72388 1.93553 1.61146 1.54197 1.85945 1.93527 1.60899 1.87050 1.53186 1.57267 1.18910 1.83183 1.25097 1.21887 0.79464 1.01616 1.03870 1.21612 0.98234 1.00584 0.85730 0.89544 0.89673 0.87662 0.84865 0.75128 0.89688 0.89536 0.95661 0.95666 0.92876 0.83760 0.83726 0.92237 0.90955 0.89377 0.92479 0.90448 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 7.87 36.01 0.28 -1.05 16 2 C 0.04 0.41 5.87 -104.65 -0.61 -0.20 16 3 C -0.18 -1.99 9.60 -39.39 -0.38 -2.37 16 4 C 0.22 3.06 6.24 -83.69 -0.52 2.54 16 5 N -0.69 -9.16 5.33 -9.86 -0.05 -9.22 16 6 C 0.51 9.12 7.55 -10.98 -0.08 9.04 16 7 O -0.50 -11.18 13.83 5.56 0.08 -11.10 16 8 C -0.13 -2.40 5.64 -27.88 -0.16 -2.56 16 9 C 0.04 0.92 4.26 -27.88 -0.12 0.80 16 10 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16 11 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 14 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.15 -2.24 8.65 -39.39 -0.34 -2.58 16 19 C 0.00 0.05 9.54 -39.61 -0.38 -0.33 16 20 C -0.71 -8.46 5.91 -39.55 -0.23 -8.70 16 21 S 2.70 30.16 5.04 -107.50 -0.54 29.61 16 22 O -0.96 -13.07 15.79 -57.17 -0.90 -13.98 16 23 O -0.96 -12.38 14.45 -57.17 -0.83 -13.21 16 24 N -1.01 -7.52 3.50 -129.20 -0.45 -7.97 16 25 C 0.08 0.39 9.02 59.85 0.54 0.93 16 26 C 0.08 0.48 10.72 59.85 0.64 1.12 16 27 H 0.09 0.44 6.66 -51.93 -0.35 0.09 16 28 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 29 H 0.11 0.90 3.92 -51.93 -0.20 0.70 16 30 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.41 3.86 8.83 -40.82 -0.36 3.50 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.14 2.37 6.58 -52.49 -0.35 2.03 16 38 H 0.15 1.76 7.33 -52.49 -0.38 1.37 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.21 8.11 -51.93 -0.42 -0.21 16 41 H 0.09 0.45 4.20 -51.93 -0.22 0.24 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 44 H 0.08 0.54 7.14 -51.93 -0.37 0.17 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -37.14 369.27 -9.17 -46.31 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.98 Total: 0.59 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -1.77 Total: -16.66 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.23 Total: -43.37 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -1.65 Total: -38.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 30.16 SS G_CDS: -0.54 Total: 29.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.14 -9.17 -46.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121158554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.792 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds