Wall clock time and date at job start Sat Apr 11 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31680 * 120.09391 * 2 1 4 4 C 1.33579 * 121.71041 * 179.97438 * 3 2 1 5 5 C 1.40474 * 119.25786 * 179.97438 * 4 3 2 6 6 C 1.36452 * 119.53130 * 179.97438 * 5 4 3 7 7 C 1.40047 * 119.52742 * 0.04243 * 6 5 4 8 8 C 1.35319 * 120.06695 * 0.02562 * 7 6 5 9 9 N 1.36111 * 120.77356 * 359.97438 * 8 7 6 10 10 C 1.35069 * 119.42604 * 180.02562 * 9 8 7 11 11 O 1.21856 * 120.61359 * 359.95704 * 10 9 8 12 12 C 1.40168 * 120.09640 * 179.97438 * 2 1 3 13 13 C 1.46740 * 120.75453 * 0.02562 * 12 2 1 14 14 O 1.21695 * 120.00074 * 277.71029 * 13 12 2 15 15 N 1.34775 * 119.99982 * 97.71163 * 13 12 2 16 16 C 1.46499 * 120.00229 * 189.41122 * 15 13 12 17 17 C 1.50701 * 109.47066 * 89.99948 * 16 15 13 18 18 H 1.08001 * 119.99892 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00592 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99710 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47394 * 89.99814 * 21 19 17 23 23 H 1.48502 * 109.46904 * 209.99869 * 21 19 17 24 24 H 1.48497 * 109.46993 * 329.99436 * 21 19 17 25 25 C 1.46498 * 119.99955 * 9.41242 * 15 13 12 26 26 C 1.53001 * 109.47169 * 187.32824 * 25 15 13 27 27 C 1.47203 * 109.46970 * 179.97438 * 26 25 15 28 28 N 6.46240 * 100.30889 * 244.61087 * 2 1 3 29 29 H 1.08996 * 109.47516 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47192 * 120.00351 * 1 2 3 31 31 H 1.09004 * 109.47068 * 239.99618 * 1 2 3 32 32 H 1.08004 * 120.23496 * 0.02562 * 5 4 3 33 33 H 1.07996 * 120.23980 * 180.32157 * 6 5 4 34 34 H 1.07995 * 119.97146 * 180.02562 * 7 6 5 35 35 H 1.08003 * 119.61493 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47518 * 210.00258 * 16 15 13 37 37 H 1.09005 * 109.46829 * 330.00192 * 16 15 13 38 38 H 0.96995 * 120.00214 * 179.97438 * 20 19 17 39 39 H 1.08993 * 109.47450 * 307.33216 * 25 15 13 40 40 H 1.09006 * 109.47053 * 67.33012 * 25 15 13 41 41 H 1.08994 * 109.47352 * 299.99966 * 26 25 15 42 42 H 1.08995 * 109.46778 * 60.00607 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1672 1.1393 0.0000 4 6 3.5025 1.1770 0.0005 5 6 4.1542 2.4214 -0.0001 6 6 5.5179 2.4664 0.0010 7 6 6.2480 1.2712 0.0017 8 6 5.6020 0.0822 0.0009 9 7 4.2419 0.0286 -0.0002 10 6 3.6252 -1.1731 -0.0005 11 8 4.2748 -2.2040 -0.0007 12 6 2.2098 -1.2127 0.0005 13 6 1.4951 -2.4943 0.0006 14 8 1.0748 -2.9566 1.0449 15 7 1.3041 -3.1593 -1.1560 16 6 0.4192 -4.3263 -1.1925 17 6 -0.9856 -3.8818 -1.5088 18 1 -1.1979 -2.8348 -1.6672 19 6 -1.9998 -4.8118 -1.5958 20 7 -1.7414 -6.0868 -1.4024 21 14 -3.7409 -4.2609 -1.9886 22 1 -3.9430 -4.2698 -3.4597 23 1 -4.7094 -5.1883 -1.3504 24 1 -3.9547 -2.8868 -1.4678 25 6 1.9814 -2.7153 -2.3768 26 6 1.4585 -3.5169 -3.5705 27 6 2.1387 -3.0703 -4.7972 28 7 2.6634 -2.7261 -5.7440 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 -0.3633 -0.5139 0.8900 32 1 3.5799 3.3361 -0.0005 33 1 6.0308 3.4168 0.0058 34 1 7.3276 1.2985 0.0030 35 1 6.1722 -0.8350 0.0010 36 1 0.7627 -5.0190 -1.9607 37 1 0.4333 -4.8234 -0.2224 38 1 -2.4549 -6.7409 -1.4632 39 1 1.7843 -1.6553 -2.5366 40 1 3.0550 -2.8739 -2.2748 41 1 1.6557 -4.5769 -3.4107 42 1 0.3850 -3.3583 -3.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201355132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:37 Heat of formation + Delta-G solvation = 44.057232 kcal Electronic energy + Delta-G solvation = -29598.374273 eV Core-core repulsion = 25545.257961 eV Total energy + Delta-G solvation = -4053.116312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -42.85448 -39.45244 -38.18046 -37.61997 -36.67819 -35.17148 -34.32547 -32.81717 -32.54137 -30.64177 -30.13800 -28.78905 -27.58979 -25.62532 -23.96358 -23.76294 -22.92270 -22.70493 -19.91519 -19.01589 -18.18437 -17.67691 -17.34500 -16.77775 -16.65837 -16.12562 -15.69758 -15.63788 -15.31204 -15.09632 -14.87193 -14.32765 -13.77925 -13.72479 -13.61094 -13.41382 -13.33204 -12.90105 -12.69179 -12.44456 -12.37568 -12.32124 -12.13021 -11.96561 -11.80614 -11.43733 -11.11243 -11.03308 -10.94704 -10.85698 -10.65998 -10.49631 -10.18544 -10.16826 -9.67172 -9.53641 -9.05173 -8.47528 -7.84800 -7.66498 -6.09177 -4.15374 -0.20650 0.22828 1.80276 1.83706 2.32662 2.93373 3.02362 3.27287 3.29248 3.36021 3.38247 3.50617 3.66022 3.77337 4.05055 4.11152 4.27604 4.37758 4.46393 4.53351 4.62902 5.02093 5.07220 5.23702 5.25276 5.27715 5.37786 5.42340 5.54451 5.59097 5.68778 5.71380 5.79641 5.83040 6.08778 6.12977 6.20465 6.35531 6.37600 6.99229 7.44547 7.48474 7.56444 7.57856 7.78065 7.87186 8.16355 8.32101 8.84031 9.03724 9.50585 10.98113 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003792 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.772520 B = 7381.860455 C = 8121.184731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.253 3.747 3 N -0.540 5.540 4 C 0.392 3.608 5 C -0.137 4.137 6 C -0.033 4.033 7 C -0.174 4.174 8 C 0.106 3.894 9 N -0.427 5.427 10 C 0.523 3.477 11 O -0.513 6.513 12 C -0.335 4.335 13 C 0.598 3.402 14 O -0.529 6.529 15 N -0.589 5.589 16 C 0.236 3.764 17 C -0.531 4.531 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.132 3.868 26 C -0.041 4.041 27 C 0.222 3.778 28 N -0.457 5.457 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.183 0.817 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.190 18.250 1.578 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.122 3.878 3 N -0.264 5.264 4 C 0.150 3.850 5 C -0.157 4.157 6 C -0.057 4.057 7 C -0.195 4.195 8 C -0.018 4.018 9 N -0.129 5.129 10 C 0.328 3.672 11 O -0.391 6.391 12 C -0.346 4.346 13 C 0.383 3.617 14 O -0.405 6.405 15 N -0.321 5.321 16 C 0.118 3.882 17 C -0.570 4.570 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.006 3.994 26 C -0.081 4.081 27 C -0.096 4.096 28 N -0.135 5.135 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.200 0.800 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.140 0.860 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.396 18.155 0.713 23.181 hybrid contribution -0.676 -0.581 0.108 0.898 sum 13.719 17.574 0.821 22.310 Atomic orbital electron populations 1.20962 0.86711 1.04330 1.05338 1.21651 0.97613 0.85909 0.82649 1.68726 1.02024 1.27938 1.27757 1.20657 0.88293 0.86076 0.89926 1.21003 0.94533 0.95325 1.04844 1.21580 0.93553 0.99537 0.91051 1.21032 1.01982 0.90659 1.05793 1.22444 0.82693 1.02074 0.94597 1.44456 1.08010 1.10136 1.50334 1.17106 0.88805 0.81554 0.79785 1.90958 1.66759 1.29952 1.51408 1.21474 0.91549 0.97351 1.24257 1.16758 0.78771 0.82282 0.83933 1.90780 1.51332 1.67381 1.30993 1.48041 1.46092 1.31496 1.06449 1.19480 0.87284 0.81942 0.99499 1.21412 0.92728 0.93919 1.48944 0.92150 1.24912 0.98920 0.94789 0.95107 1.69924 1.33207 1.00773 1.48783 0.86570 0.84288 0.78717 0.78317 1.20625 1.21174 1.19769 1.21042 0.96259 0.97605 0.84447 1.19718 1.02015 1.02284 0.84115 1.29349 0.92856 0.92722 0.94623 1.81141 1.10511 1.09833 1.12027 0.89840 0.88473 0.88420 0.81567 0.82983 0.82350 0.80038 0.94129 0.93304 0.92593 0.92354 0.92208 0.85988 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 9.31 36.00 0.34 -1.37 16 2 C 0.25 3.99 6.86 -81.94 -0.56 3.43 16 3 N -0.54 -7.35 10.19 -8.21 -0.08 -7.43 16 4 C 0.39 4.54 7.32 -155.80 -1.14 3.40 16 5 C -0.14 -0.96 9.95 -39.38 -0.39 -1.35 16 6 C -0.03 -0.14 10.08 -39.55 -0.40 -0.54 16 7 C -0.17 -0.86 10.00 -39.94 -0.40 -1.26 16 8 C 0.11 0.93 10.07 -16.69 -0.17 0.76 16 9 N -0.43 -5.40 2.76 -64.90 -0.18 -5.58 16 10 C 0.52 8.88 7.20 -14.85 -0.11 8.77 16 11 O -0.51 -9.88 15.94 5.05 0.08 -9.80 16 12 C -0.34 -6.13 4.24 -104.46 -0.44 -6.58 16 13 C 0.60 13.12 5.78 -12.83 -0.07 13.05 16 14 O -0.53 -13.71 16.66 5.19 0.09 -13.62 16 15 N -0.59 -12.27 2.86 -176.58 -0.50 -12.77 16 16 C 0.24 5.68 4.61 -5.19 -0.02 5.66 16 17 C -0.53 -13.38 8.35 -34.44 -0.29 -13.67 16 18 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 21 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.13 2.22 5.26 -4.04 -0.02 2.20 16 26 C -0.04 -0.64 4.61 -29.52 -0.14 -0.77 16 27 C 0.22 3.47 15.43 -20.76 -0.32 3.15 16 28 N -0.46 -7.94 18.54 42.15 0.78 -7.15 16 29 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 34 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 35 H 0.18 1.49 7.32 -52.48 -0.38 1.11 16 36 H 0.04 0.94 5.87 -51.93 -0.30 0.64 16 37 H 0.05 1.38 7.32 -51.93 -0.38 1.00 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.06 0.91 7.66 -51.93 -0.40 0.52 16 40 H 0.06 1.00 7.90 -51.93 -0.41 0.59 16 41 H 0.12 1.86 6.61 -51.93 -0.34 1.52 16 42 H 0.14 2.22 7.05 -51.93 -0.37 1.85 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -35.59 370.04 -7.43 -43.02 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.67 Total: -0.08 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: -4.24 Total: 16.49 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.75 Total: -56.85 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.17 Total: -23.43 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.59 -7.43 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201355132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.080 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds