Wall clock time and date at job start Sat Apr 11 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31680 * 120.09391 * 2 1 4 4 C 1.33579 * 121.71041 * 179.97438 * 3 2 1 5 5 C 1.40474 * 119.25786 * 179.97438 * 4 3 2 6 6 C 1.36452 * 119.53130 * 179.97438 * 5 4 3 7 7 C 1.40047 * 119.52742 * 0.04243 * 6 5 4 8 8 C 1.35319 * 120.06695 * 0.02562 * 7 6 5 9 9 N 1.36111 * 120.77356 * 359.97438 * 8 7 6 10 10 C 1.35069 * 119.42604 * 180.02562 * 9 8 7 11 11 O 1.21856 * 120.61359 * 359.95704 * 10 9 8 12 12 C 1.40168 * 120.09640 * 179.97438 * 2 1 3 13 13 C 1.46740 * 120.75453 * 0.02562 * 12 2 1 14 14 O 1.21695 * 120.00074 * 277.71029 * 13 12 2 15 15 N 1.34775 * 119.99982 * 97.71163 * 13 12 2 16 16 C 1.46499 * 120.00229 * 189.41122 * 15 13 12 17 17 C 1.50701 * 109.47066 * 89.99948 * 16 15 13 18 18 H 1.08001 * 119.99892 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00592 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99710 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47394 * 89.99814 * 21 19 17 23 23 H 1.48502 * 109.46904 * 209.99869 * 21 19 17 24 24 H 1.48497 * 109.46993 * 329.99436 * 21 19 17 25 25 C 1.46498 * 119.99955 * 9.41242 * 15 13 12 26 26 C 1.53001 * 109.47169 * 187.32824 * 25 15 13 27 27 C 1.47203 * 109.46970 * 179.97438 * 26 25 15 28 28 N 6.46240 * 100.30889 * 244.61087 * 2 1 3 29 29 H 1.08996 * 109.47516 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47192 * 120.00351 * 1 2 3 31 31 H 1.09004 * 109.47068 * 239.99618 * 1 2 3 32 32 H 1.08004 * 120.23496 * 0.02562 * 5 4 3 33 33 H 1.07996 * 120.23980 * 180.32157 * 6 5 4 34 34 H 1.07995 * 119.97146 * 180.02562 * 7 6 5 35 35 H 1.08003 * 119.61493 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47518 * 210.00258 * 16 15 13 37 37 H 1.09005 * 109.46829 * 330.00192 * 16 15 13 38 38 H 0.96995 * 120.00214 * 179.97438 * 20 19 17 39 39 H 1.08993 * 109.47450 * 307.33216 * 25 15 13 40 40 H 1.09006 * 109.47053 * 67.33012 * 25 15 13 41 41 H 1.08994 * 109.47352 * 299.99966 * 26 25 15 42 42 H 1.08995 * 109.46778 * 60.00607 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1672 1.1393 0.0000 4 6 3.5025 1.1770 0.0005 5 6 4.1542 2.4214 -0.0001 6 6 5.5179 2.4664 0.0010 7 6 6.2480 1.2712 0.0017 8 6 5.6020 0.0822 0.0009 9 7 4.2419 0.0286 -0.0002 10 6 3.6252 -1.1731 -0.0005 11 8 4.2748 -2.2040 -0.0007 12 6 2.2098 -1.2127 0.0005 13 6 1.4951 -2.4943 0.0006 14 8 1.0748 -2.9566 1.0449 15 7 1.3041 -3.1593 -1.1560 16 6 0.4192 -4.3263 -1.1925 17 6 -0.9856 -3.8818 -1.5088 18 1 -1.1979 -2.8348 -1.6672 19 6 -1.9998 -4.8118 -1.5958 20 7 -1.7414 -6.0868 -1.4024 21 14 -3.7409 -4.2609 -1.9886 22 1 -3.9430 -4.2698 -3.4597 23 1 -4.7094 -5.1883 -1.3504 24 1 -3.9547 -2.8868 -1.4678 25 6 1.9814 -2.7153 -2.3768 26 6 1.4585 -3.5169 -3.5705 27 6 2.1387 -3.0703 -4.7972 28 7 2.6634 -2.7261 -5.7440 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 -0.3633 -0.5139 0.8900 32 1 3.5799 3.3361 -0.0005 33 1 6.0308 3.4168 0.0058 34 1 7.3276 1.2985 0.0030 35 1 6.1722 -0.8350 0.0010 36 1 0.7627 -5.0190 -1.9607 37 1 0.4333 -4.8234 -0.2224 38 1 -2.4549 -6.7409 -1.4632 39 1 1.7843 -1.6553 -2.5366 40 1 3.0550 -2.8739 -2.2748 41 1 1.6557 -4.5769 -3.4107 42 1 0.3850 -3.3583 -3.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201355132.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:34 Heat of formation + Delta-G solvation = 20.527476 kcal Electronic energy + Delta-G solvation = -29599.394600 eV Core-core repulsion = 25545.257961 eV Total energy + Delta-G solvation = -4054.136639 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -43.82021 -40.90015 -39.37822 -38.66968 -38.10816 -36.79837 -35.17416 -34.70900 -33.57145 -32.10246 -31.30209 -29.88967 -29.24455 -26.68846 -25.43181 -24.72902 -24.37693 -23.86894 -21.23346 -20.08139 -19.53179 -18.68426 -18.59565 -18.43456 -17.83860 -17.41520 -17.00657 -16.74128 -16.55459 -16.33837 -16.10648 -15.74638 -15.22895 -14.96952 -14.92068 -14.53932 -14.49496 -14.31680 -14.07970 -13.88091 -13.60806 -13.50152 -13.24287 -13.12023 -12.96329 -12.87020 -12.78524 -12.58968 -12.44442 -12.18710 -12.06392 -11.89067 -11.70314 -11.60043 -11.32390 -10.75021 -10.51816 -10.41050 -9.43312 -8.90174 -8.11082 -6.24123 -1.03935 -0.54843 0.77996 0.88392 1.47079 1.49723 1.54396 1.58567 1.60767 1.70619 1.76950 2.23273 2.49556 2.58498 2.75154 2.97293 3.14362 3.20234 3.39607 3.63629 3.74119 3.83868 3.96987 4.02722 4.09674 4.17903 4.32737 4.42225 4.57268 4.57958 4.75349 4.78232 4.84503 4.90960 5.00775 5.05710 5.08638 5.17202 5.30298 5.38898 5.47307 5.64149 5.89365 6.15695 6.41714 6.46114 6.52934 6.64084 6.84372 7.30741 7.48911 8.96153 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003792 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.772520 B = 7381.860455 C = 8121.184731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.271 3.729 3 N -0.551 5.551 4 C 0.378 3.622 5 C -0.142 4.142 6 C 0.005 3.995 7 C -0.130 4.130 8 C 0.065 3.935 9 N -0.425 5.425 10 C 0.521 3.479 11 O -0.557 6.557 12 C -0.392 4.392 13 C 0.599 3.401 14 O -0.588 6.588 15 N -0.590 5.590 16 C 0.250 3.750 17 C -0.531 4.531 18 H 0.066 0.934 19 C 0.016 3.984 20 N -0.926 5.926 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.291 1.291 24 H -0.267 1.267 25 C 0.138 3.862 26 C -0.028 4.028 27 C 0.245 3.755 28 N -0.478 5.478 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.193 0.807 33 H 0.210 0.790 34 H 0.207 0.793 35 H 0.179 0.821 36 H 0.047 0.953 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.489 23.162 0.433 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 N -0.276 5.276 4 C 0.141 3.859 5 C -0.162 4.162 6 C -0.019 4.019 7 C -0.150 4.150 8 C -0.058 4.058 9 N -0.124 5.124 10 C 0.328 3.672 11 O -0.439 6.439 12 C -0.404 4.404 13 C 0.386 3.614 14 O -0.469 6.469 15 N -0.321 5.321 16 C 0.130 3.870 17 C -0.569 4.569 18 H 0.084 0.916 19 C -0.183 4.183 20 N -0.565 5.565 21 Si 0.783 3.217 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.191 1.191 25 C 0.013 3.987 26 C -0.068 4.068 27 C -0.072 4.072 28 N -0.156 5.156 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.210 0.790 33 H 0.227 0.773 34 H 0.224 0.776 35 H 0.196 0.804 36 H 0.065 0.935 37 H 0.015 0.985 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.141 0.859 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.787 23.156 -0.472 28.604 hybrid contribution -1.033 -1.807 0.522 2.145 sum 15.754 21.349 0.050 26.533 Atomic orbital electron populations 1.20920 0.86629 1.05626 1.03825 1.21663 0.97867 0.85817 0.81153 1.68748 1.03318 1.26249 1.29331 1.21483 0.88036 0.87146 0.89280 1.21494 0.96067 0.93885 1.04764 1.22329 0.92286 1.01460 0.85776 1.21764 1.04186 0.89052 1.00007 1.22893 0.81038 1.04221 0.97689 1.44240 1.09582 1.09040 1.49578 1.16868 0.88393 0.82417 0.79548 1.90903 1.67482 1.31625 1.53869 1.20965 0.92510 0.95957 1.30942 1.17325 0.77852 0.83213 0.83025 1.90710 1.53937 1.69283 1.32959 1.48010 1.45609 1.30576 1.07904 1.19077 0.88154 0.83116 0.96655 1.21629 0.93173 0.94113 1.48003 0.91586 1.25714 1.02839 0.94746 0.95033 1.70055 1.34374 1.01926 1.50172 0.85555 0.79264 0.78181 0.78708 1.19067 1.21725 1.19149 1.21114 0.95856 0.98566 0.83133 1.19541 1.01631 1.02095 0.83535 1.29059 0.92117 0.91950 0.94039 1.81163 1.11201 1.10587 1.12617 0.86960 0.89481 0.90468 0.78960 0.77276 0.77648 0.80407 0.93517 0.98528 0.92631 0.90799 0.92139 0.85857 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.45 9.31 71.23 0.66 -2.79 16 2 C 0.27 8.85 6.86 43.05 0.30 9.14 16 3 N -0.55 -14.51 10.19 -179.88 -1.83 -16.35 16 4 C 0.38 7.94 7.32 133.84 0.98 8.92 16 5 C -0.14 -1.25 9.95 22.40 0.22 -1.02 16 6 C 0.01 0.01 10.08 22.29 0.22 0.23 16 7 C -0.13 -0.49 10.00 22.03 0.22 -0.27 16 8 C 0.06 0.98 10.07 83.36 0.84 1.82 16 9 N -0.42 -10.43 2.76 -477.22 -1.32 -11.75 16 10 C 0.52 18.64 7.20 85.02 0.61 19.25 16 11 O -0.56 -23.04 15.94 -4.85 -0.08 -23.12 16 12 C -0.39 -15.32 4.24 -19.76 -0.08 -15.40 16 13 C 0.60 28.58 5.78 86.46 0.50 29.08 16 14 O -0.59 -33.63 16.66 -4.33 -0.07 -33.70 16 15 N -0.59 -26.41 2.86 -830.80 -2.37 -28.79 16 16 C 0.25 12.89 4.61 85.63 0.40 13.28 16 17 C -0.53 -27.83 8.35 25.60 0.21 -27.62 16 18 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 19 C 0.02 0.87 5.46 84.65 0.46 1.33 16 20 N -0.93 -53.34 13.29 21.45 0.28 -53.06 16 21 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 C 0.14 4.83 5.26 86.38 0.45 5.28 16 26 C -0.03 -0.88 4.61 28.79 0.13 -0.75 16 27 C 0.25 7.56 15.43 89.44 1.38 8.94 16 28 N -0.48 -16.19 18.54 20.01 0.37 -15.82 16 29 H 0.11 2.64 8.11 -2.39 -0.02 2.62 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.21 -1.86 8.06 -2.91 -0.02 -1.88 16 34 H 0.21 -0.98 8.06 -2.91 -0.02 -1.00 16 35 H 0.18 2.80 7.32 -2.91 -0.02 2.78 16 36 H 0.05 2.32 5.87 -2.39 -0.01 2.30 16 37 H 0.00 -0.21 7.32 -2.38 -0.02 -0.23 16 38 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.07 2.38 7.66 -2.39 -0.02 2.36 16 40 H 0.06 2.13 7.90 -2.38 -0.02 2.11 16 41 H 0.12 3.89 6.61 -2.39 -0.02 3.87 16 42 H 0.13 4.39 7.05 -2.39 -0.02 4.38 16 Total: -1.00 -87.37 370.04 5.60 -81.77 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 1.08 Total: 7.09 kcal Atomic # 6 Polarization: 41.92 SS G_CDS: 7.51 Total: 49.43 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -4.87 Total: -125.76 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -0.15 Total: -56.82 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -87.37 5.60 -81.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201355132.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.295 kcal (2) G-P(sol) polarization free energy of solvation -87.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds