Wall clock time and date at job start Sat Apr 11 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 C 1.50695 * 109.47029 * 120.00496 * 2 1 3 5 5 O 1.21285 * 120.00327 * 114.50898 * 4 2 1 6 6 N 1.34779 * 120.00125 * 294.78025 * 4 2 1 7 7 C 1.46498 * 120.00175 * 179.72604 * 6 4 2 8 8 C 1.53005 * 109.46996 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.47041 * 60.00125 * 8 7 6 10 10 O 1.42902 * 109.47156 * 300.00377 * 8 7 6 11 11 C 1.53002 * 109.47105 * 180.02562 * 8 7 6 12 12 N 1.46494 * 109.46968 * 185.00301 * 11 8 7 13 13 C 1.36944 * 119.99912 * 180.02562 * 12 11 8 14 14 H 1.07999 * 119.99682 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99856 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99466 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47286 * 90.00318 * 17 15 13 19 19 H 1.48503 * 109.46832 * 210.00137 * 17 15 13 20 20 H 1.48501 * 109.47544 * 329.99578 * 17 15 13 21 21 C 1.50700 * 109.46779 * 240.00217 * 2 1 3 22 22 C 1.38267 * 119.99132 * 174.10906 * 21 2 1 23 23 C 1.38220 * 120.02372 * 179.76632 * 22 21 2 24 24 C 1.38237 * 120.01578 * 0.50836 * 23 22 21 25 25 C 1.38333 * 119.98416 * 359.74818 * 24 23 22 26 26 Cl 1.73600 * 120.01225 * 180.02562 * 25 24 23 27 27 C 1.38193 * 119.99539 * 354.38617 * 21 2 1 28 28 H 1.08998 * 109.46854 * 300.00102 * 1 2 3 29 29 H 1.08998 * 109.47434 * 59.99393 * 1 2 3 30 30 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47191 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47358 * 300.00653 * 3 2 1 33 33 H 1.09007 * 109.46652 * 60.00274 * 3 2 1 34 34 H 0.97008 * 119.99633 * 359.72649 * 6 4 2 35 35 H 1.09000 * 109.47023 * 299.99946 * 7 6 4 36 36 H 1.08996 * 109.46968 * 60.00553 * 7 6 4 37 37 H 0.96703 * 113.99558 * 299.99707 * 10 8 7 38 38 H 1.08998 * 109.46935 * 305.00022 * 11 8 7 39 39 H 1.09000 * 109.46744 * 65.00280 * 11 8 7 40 40 H 0.96997 * 120.00456 * 359.97438 * 12 11 8 41 41 H 0.96996 * 119.99964 * 179.97438 * 16 15 13 42 42 H 1.08001 * 119.98570 * 359.97438 * 22 21 2 43 43 H 1.07996 * 119.99150 * 180.25392 * 23 22 21 44 44 H 1.08003 * 120.00739 * 179.76403 * 24 23 22 45 45 H 1.07998 * 120.00600 * 359.95931 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.6453 -1.7514 1.1219 6 7 1.7957 -0.1921 2.4517 7 6 2.2788 -0.8859 3.6482 8 6 1.8793 -0.0925 4.8940 9 1 0.7936 -0.0066 4.9373 10 8 2.4584 1.2125 4.8336 11 6 2.3844 -0.8168 6.1435 12 7 1.9007 -0.1225 7.3394 13 6 2.2287 -0.5919 8.5833 14 1 2.8444 -1.4736 8.6827 15 6 1.7707 0.0663 9.7165 16 7 1.0217 1.1416 9.5953 17 14 2.2189 -0.5736 11.4132 18 1 3.4858 0.0578 11.8618 19 1 1.1336 -0.2402 12.3705 20 1 2.3932 -2.0473 11.3565 21 6 2.0323 -0.7104 -1.2305 22 6 3.3857 -0.7312 -1.5125 23 6 3.8476 -1.3867 -2.6383 24 6 2.9556 -2.0128 -3.4887 25 6 1.6008 -1.9878 -3.2099 26 17 0.4800 -2.7744 -4.2770 27 6 1.1395 -1.3359 -2.0799 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.3055 0.6405 2.5386 35 1 1.8367 -1.8811 3.6944 36 1 3.3645 -0.9721 3.6046 37 1 3.4245 1.2126 4.7930 38 1 2.0142 -1.8420 6.1438 39 1 3.4744 -0.8241 6.1435 40 1 1.3486 0.6700 7.2501 41 1 0.7014 1.6013 10.3871 42 1 4.0826 -0.2381 -0.8510 43 1 4.9052 -1.4062 -2.8559 44 1 3.3162 -2.5217 -4.3704 45 1 0.0820 -1.3163 -1.8616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268324281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:09 Heat of formation + Delta-G solvation = -66.572077 kcal Electronic energy + Delta-G solvation = -26700.993089 eV Core-core repulsion = 22744.187024 eV Total energy + Delta-G solvation = -3956.806065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94076 -39.17681 -37.70021 -36.81016 -35.51159 -34.40559 -34.01746 -31.37240 -31.23514 -30.24667 -28.94724 -27.80851 -25.63755 -24.30677 -22.91348 -22.65420 -21.76760 -21.44548 -19.63769 -17.93729 -17.22396 -17.03752 -16.38941 -16.09181 -15.73131 -15.69084 -15.26818 -14.73184 -14.50963 -14.43836 -14.15499 -14.08573 -13.68623 -13.65145 -13.15858 -13.00912 -12.65735 -12.63835 -12.51767 -12.32632 -12.25327 -12.13059 -11.88724 -11.74082 -11.57856 -11.24753 -11.04060 -10.99241 -10.84114 -10.66278 -10.20869 -9.98399 -9.82523 -9.53582 -9.21919 -9.14098 -8.94850 -8.93237 -6.97189 -5.79147 -3.08917 0.86174 0.94322 1.81252 2.50474 2.96433 3.40940 3.41780 3.47024 3.48665 4.02015 4.32575 4.49442 4.52061 4.59524 4.63138 4.68829 4.74478 4.85153 4.88346 5.08302 5.18402 5.20583 5.29650 5.33105 5.34876 5.44775 5.52798 5.55823 5.58471 5.69185 5.73603 5.79557 5.89938 5.90972 6.02648 6.15725 6.18447 6.34117 6.46541 6.47621 6.63122 7.39677 7.65845 7.87736 8.10783 8.38970 9.50697 10.06817 10.42446 11.43173 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.001813 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.327456 B =15438.209163 C =15493.411578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C -0.141 4.141 4 C 0.521 3.479 5 O -0.533 6.533 6 N -0.717 5.717 7 C 0.090 3.910 8 C 0.089 3.911 9 H 0.105 0.895 10 O -0.553 6.553 11 C 0.127 3.873 12 N -0.726 5.726 13 C -0.244 4.244 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.043 4.043 22 C -0.088 4.088 23 C -0.107 4.107 24 C -0.113 4.113 25 C -0.035 4.035 26 Cl -0.075 7.075 27 C -0.106 4.106 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.405 0.595 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.373 0.627 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.388 0.612 41 H 0.256 0.744 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -1.144 -29.631 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.045 4.045 3 C -0.198 4.198 4 C 0.306 3.694 5 O -0.409 6.409 6 N -0.369 5.369 7 C -0.035 4.035 8 C 0.029 3.971 9 H 0.123 0.877 10 O -0.357 6.357 11 C -0.001 4.001 12 N -0.370 5.370 13 C -0.375 4.375 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.044 4.044 22 C -0.106 4.106 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.061 4.061 26 Cl -0.046 7.046 27 C -0.124 4.124 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.240 0.760 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.220 0.780 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.060 -1.895 -29.618 29.698 hybrid contribution 0.331 -0.090 0.960 1.019 sum 1.392 -1.984 -28.658 28.760 Atomic orbital electron populations 1.21987 0.91695 1.03195 1.03527 1.19726 0.97627 0.96277 0.90904 1.21933 1.01941 0.92504 1.03450 1.20283 0.79644 0.85229 0.84260 1.90733 1.40496 1.23105 1.86605 1.45896 1.58148 1.27532 1.05343 1.22109 1.00187 0.96876 0.84308 1.22401 0.99211 0.83182 0.92265 0.87733 1.86575 1.25054 1.27470 1.96639 1.21197 0.96882 0.95283 0.86788 1.42233 1.61975 1.32896 0.99944 1.19218 1.26372 1.08487 0.83460 0.91203 1.24764 1.00400 0.97798 0.97904 1.69671 1.39358 1.20338 1.28432 0.86175 0.77478 0.78109 0.84315 1.21676 1.21716 1.20738 1.19222 0.93318 0.97535 0.94333 1.21043 0.94918 0.98134 0.96497 1.21070 0.99727 0.97319 0.94356 1.21047 0.91116 1.00374 1.00593 1.20844 0.90812 1.00440 0.94043 1.98369 1.62064 1.79380 1.64807 1.21012 1.00772 0.97460 0.93179 0.91112 0.90761 0.91462 0.91642 0.90999 0.91063 0.75960 0.90449 0.91068 0.78004 0.95389 0.95935 0.77733 0.93457 0.85669 0.85042 0.85092 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.10 37.16 0.26 -0.77 16 2 C -0.04 -0.36 0.72 -156.81 -0.11 -0.47 16 3 C -0.14 -0.95 8.07 37.16 0.30 -0.65 16 4 C 0.52 6.06 6.35 -10.99 -0.07 5.99 16 5 O -0.53 -8.26 15.55 5.55 0.09 -8.17 16 6 N -0.72 -7.67 5.28 -60.29 -0.32 -7.99 16 7 C 0.09 1.11 5.34 -4.04 -0.02 1.09 16 8 C 0.09 1.30 3.09 -26.73 -0.08 1.22 16 9 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 10 O -0.55 -8.16 13.03 -35.23 -0.46 -8.62 16 11 C 0.13 2.40 5.90 -4.04 -0.02 2.38 16 12 N -0.73 -18.08 5.55 -59.91 -0.33 -18.41 16 13 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 17 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.04 -0.42 4.23 -104.63 -0.44 -0.86 16 22 C -0.09 -0.83 8.38 -39.58 -0.33 -1.16 16 23 C -0.11 -0.89 10.05 -39.59 -0.40 -1.29 16 24 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 25 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 26 Cl -0.08 -0.66 28.96 -51.86 -1.50 -2.16 16 27 C -0.11 -0.99 8.78 -39.55 -0.35 -1.34 16 28 H 0.07 0.44 7.95 -51.93 -0.41 0.03 16 29 H 0.07 0.41 7.78 -51.93 -0.40 0.01 16 30 H 0.07 0.52 7.25 -51.93 -0.38 0.14 16 31 H 0.06 0.45 7.08 -51.93 -0.37 0.08 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.43 7.28 -51.93 -0.38 0.05 16 34 H 0.40 3.73 7.26 -40.82 -0.30 3.43 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.37 4.55 9.04 45.56 0.41 4.96 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.39 10.34 7.67 -40.82 -0.31 10.03 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 42 H 0.13 1.10 7.23 -52.49 -0.38 0.72 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.14 1.10 5.91 -52.49 -0.31 0.79 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -33.68 387.49 -8.89 -42.57 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -5.75 Total: 12.20 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.15 Total: -5.18 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.07 Total: -53.78 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.37 Total: -16.79 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.68 -8.89 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268324281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.003 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds