Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47329 * 2 1 4 4 C 1.50695 * 109.47029 * 120.00496 * 2 1 3 5 5 O 1.21285 * 120.00327 * 114.50898 * 4 2 1 6 6 N 1.34779 * 120.00125 * 294.78025 * 4 2 1 7 7 C 1.46498 * 120.00175 * 179.72604 * 6 4 2 8 8 C 1.53005 * 109.46996 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.47041 * 60.00125 * 8 7 6 10 10 O 1.42902 * 109.47156 * 300.00377 * 8 7 6 11 11 C 1.53002 * 109.47105 * 180.02562 * 8 7 6 12 12 N 1.46494 * 109.46968 * 185.00301 * 11 8 7 13 13 C 1.36944 * 119.99912 * 180.02562 * 12 11 8 14 14 H 1.07999 * 119.99682 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99856 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99466 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47286 * 90.00318 * 17 15 13 19 19 H 1.48503 * 109.46832 * 210.00137 * 17 15 13 20 20 H 1.48501 * 109.47544 * 329.99578 * 17 15 13 21 21 C 1.50700 * 109.46779 * 240.00217 * 2 1 3 22 22 C 1.38267 * 119.99132 * 174.10906 * 21 2 1 23 23 C 1.38220 * 120.02372 * 179.76632 * 22 21 2 24 24 C 1.38237 * 120.01578 * 0.50836 * 23 22 21 25 25 C 1.38333 * 119.98416 * 359.74818 * 24 23 22 26 26 Cl 1.73600 * 120.01225 * 180.02562 * 25 24 23 27 27 C 1.38193 * 119.99539 * 354.38617 * 21 2 1 28 28 H 1.08998 * 109.46854 * 300.00102 * 1 2 3 29 29 H 1.08998 * 109.47434 * 59.99393 * 1 2 3 30 30 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47191 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47358 * 300.00653 * 3 2 1 33 33 H 1.09007 * 109.46652 * 60.00274 * 3 2 1 34 34 H 0.97008 * 119.99633 * 359.72649 * 6 4 2 35 35 H 1.09000 * 109.47023 * 299.99946 * 7 6 4 36 36 H 1.08996 * 109.46968 * 60.00553 * 7 6 4 37 37 H 0.96703 * 113.99558 * 299.99707 * 10 8 7 38 38 H 1.08998 * 109.46935 * 305.00022 * 11 8 7 39 39 H 1.09000 * 109.46744 * 65.00280 * 11 8 7 40 40 H 0.96997 * 120.00456 * 359.97438 * 12 11 8 41 41 H 0.96996 * 119.99964 * 179.97438 * 16 15 13 42 42 H 1.08001 * 119.98570 * 359.97438 * 22 21 2 43 43 H 1.07996 * 119.99150 * 180.25392 * 23 22 21 44 44 H 1.08003 * 120.00739 * 179.76403 * 24 23 22 45 45 H 1.07998 * 120.00600 * 359.95931 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.6453 -1.7514 1.1219 6 7 1.7957 -0.1921 2.4517 7 6 2.2788 -0.8859 3.6482 8 6 1.8793 -0.0925 4.8940 9 1 0.7936 -0.0066 4.9373 10 8 2.4584 1.2125 4.8336 11 6 2.3844 -0.8168 6.1435 12 7 1.9007 -0.1225 7.3394 13 6 2.2287 -0.5919 8.5833 14 1 2.8444 -1.4736 8.6827 15 6 1.7707 0.0663 9.7165 16 7 1.0217 1.1416 9.5953 17 14 2.2189 -0.5736 11.4132 18 1 3.4858 0.0578 11.8618 19 1 1.1336 -0.2402 12.3705 20 1 2.3932 -2.0473 11.3565 21 6 2.0323 -0.7104 -1.2305 22 6 3.3857 -0.7312 -1.5125 23 6 3.8476 -1.3867 -2.6383 24 6 2.9556 -2.0128 -3.4887 25 6 1.6008 -1.9878 -3.2099 26 17 0.4800 -2.7744 -4.2770 27 6 1.1395 -1.3359 -2.0799 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.3055 0.6405 2.5386 35 1 1.8367 -1.8811 3.6944 36 1 3.3645 -0.9721 3.6046 37 1 3.4245 1.2126 4.7930 38 1 2.0142 -1.8420 6.1438 39 1 3.4744 -0.8241 6.1435 40 1 1.3486 0.6700 7.2501 41 1 0.7014 1.6013 10.3871 42 1 4.0826 -0.2381 -0.8510 43 1 4.9052 -1.4062 -2.8559 44 1 3.3162 -2.5217 -4.3704 45 1 0.0820 -1.3163 -1.8616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268324281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -90.445514 kcal Electronic energy + Delta-G solvation = -26702.028319 eV Core-core repulsion = 22744.187024 eV Total energy + Delta-G solvation = -3957.841295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73345 -40.00625 -38.89856 -37.51349 -36.24881 -36.07628 -35.20295 -33.19760 -31.90386 -31.09947 -30.21405 -28.35171 -27.16997 -25.20676 -24.39912 -23.33724 -22.80493 -22.66351 -20.50621 -19.23631 -18.68993 -17.82977 -17.53268 -17.19445 -16.69561 -16.44425 -16.41449 -16.03687 -15.72348 -15.47809 -15.09065 -14.98646 -14.76364 -14.71411 -14.33132 -14.23544 -13.93379 -13.54304 -13.32730 -13.17434 -13.07744 -12.95497 -12.82857 -12.75731 -12.74380 -12.41654 -12.22447 -12.16240 -11.97233 -11.87621 -11.80673 -11.67186 -11.10022 -10.97796 -10.69925 -10.12473 -9.88449 -9.62840 -9.01476 -7.95458 -5.24795 0.18241 0.28289 1.13655 1.47671 1.49144 1.57632 1.60344 2.08346 2.55497 2.70684 3.35552 3.36587 3.48582 3.59412 3.70253 3.84244 3.97694 3.99568 4.03987 4.13809 4.21854 4.23627 4.41039 4.46668 4.61741 4.67179 4.70840 4.71738 4.78116 4.81981 4.87367 4.93683 4.97593 5.17175 5.21403 5.22527 5.26196 5.36592 5.38685 5.48065 5.52674 5.82527 6.25902 6.51891 6.80508 7.21012 7.33111 8.08302 8.31421 9.27623 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.001813 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.327456 B =15438.209163 C =15493.411578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.035 4.035 3 C -0.139 4.139 4 C 0.521 3.479 5 O -0.575 6.575 6 N -0.707 5.707 7 C 0.103 3.897 8 C 0.110 3.890 9 H 0.101 0.899 10 O -0.561 6.561 11 C 0.122 3.878 12 N -0.739 5.739 13 C -0.249 4.249 14 H 0.076 0.924 15 C -0.075 4.075 16 N -0.967 5.967 17 Si 0.974 3.026 18 H -0.287 1.287 19 H -0.295 1.295 20 H -0.270 1.270 21 C -0.055 4.055 22 C -0.102 4.102 23 C -0.109 4.109 24 C -0.118 4.118 25 C -0.047 4.047 26 Cl -0.074 7.074 27 C -0.115 4.115 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.385 0.615 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.127 0.873 43 H 0.153 0.847 44 H 0.148 0.852 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 -1.165 -30.570 30.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 C -0.196 4.196 4 C 0.308 3.692 5 O -0.454 6.454 6 N -0.360 5.360 7 C -0.022 4.022 8 C 0.050 3.950 9 H 0.118 0.882 10 O -0.367 6.367 11 C -0.005 4.005 12 N -0.382 5.382 13 C -0.381 4.381 14 H 0.093 0.907 15 C -0.268 4.268 16 N -0.617 5.617 17 Si 0.803 3.197 18 H -0.214 1.214 19 H -0.222 1.222 20 H -0.195 1.195 21 C -0.056 4.056 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.136 4.136 25 C -0.073 4.073 26 Cl -0.045 7.045 27 C -0.134 4.134 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.145 0.855 43 H 0.171 0.829 44 H 0.165 0.835 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.500 -1.924 -30.588 30.685 hybrid contribution 0.246 -0.123 1.168 1.199 sum 1.746 -2.047 -29.420 29.543 Atomic orbital electron populations 1.22028 0.90433 1.03041 1.04906 1.19719 0.98520 0.96760 0.88850 1.21951 1.01792 0.91263 1.04577 1.20827 0.78702 0.84697 0.85015 1.90713 1.42441 1.25021 1.87184 1.45782 1.57835 1.27651 1.04705 1.21822 1.00208 0.96216 0.83990 1.22067 0.98751 0.82935 0.91259 0.88167 1.86556 1.26285 1.27341 1.96538 1.21411 0.97156 0.95352 0.86621 1.42410 1.61998 1.32862 1.00961 1.19636 1.25363 1.08216 0.84846 0.90650 1.25590 1.01103 0.98428 1.01655 1.69823 1.41046 1.21823 1.29015 0.85133 0.76839 0.78051 0.79672 1.21369 1.22159 1.19469 1.19391 0.93560 0.97921 0.94733 1.21226 0.95095 0.98632 0.97049 1.21359 1.00906 0.96625 0.93841 1.21307 0.90892 1.00242 1.01171 1.21023 0.91316 1.00736 0.94272 1.98365 1.62075 1.79359 1.64722 1.21170 1.01314 0.97556 0.93326 0.90152 0.89008 0.92392 0.91955 0.89608 0.90193 0.74832 0.91010 0.90923 0.76613 0.95081 0.95171 0.79081 0.93970 0.85541 0.82918 0.83461 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 7.10 71.98 0.51 -1.30 16 2 C -0.04 -0.56 0.72 -53.67 -0.04 -0.60 16 3 C -0.14 -1.59 8.07 71.98 0.58 -1.01 16 4 C 0.52 11.59 6.35 87.66 0.56 12.15 16 5 O -0.57 -17.58 15.55 -3.05 -0.05 -17.63 16 6 N -0.71 -14.16 5.28 -463.06 -2.44 -16.60 16 7 C 0.10 2.43 5.34 86.38 0.46 2.89 16 8 C 0.11 3.08 3.09 30.60 0.09 3.18 16 9 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 10 O -0.56 -15.79 13.03 -148.98 -1.94 -17.73 16 11 C 0.12 4.51 5.90 86.38 0.51 5.02 16 12 N -0.74 -36.71 5.55 -343.45 -1.91 -38.61 16 13 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 14 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 15 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 16 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 17 Si 0.97 45.86 29.55 68.60 2.03 47.88 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C -0.06 -1.01 4.23 -19.87 -0.08 -1.09 16 22 C -0.10 -1.83 8.38 22.27 0.19 -1.65 16 23 C -0.11 -1.69 10.05 22.27 0.22 -1.47 16 24 C -0.12 -1.86 9.83 22.29 0.22 -1.64 16 25 C -0.05 -0.84 6.32 22.32 0.14 -0.69 16 26 Cl -0.07 -1.23 28.96 -2.72 -0.08 -1.31 16 27 C -0.12 -2.06 8.78 22.29 0.20 -1.86 16 28 H 0.08 0.83 7.95 -2.39 -0.02 0.81 16 29 H 0.09 0.82 7.78 -2.39 -0.02 0.80 16 30 H 0.06 0.83 7.25 -2.39 -0.02 0.81 16 31 H 0.06 0.76 7.08 -2.39 -0.02 0.75 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.78 7.28 -2.38 -0.02 0.76 16 34 H 0.41 6.85 7.26 -92.70 -0.67 6.18 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.38 8.77 9.04 -74.06 -0.67 8.10 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.38 20.21 7.67 -92.71 -0.71 19.50 16 41 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.13 2.15 7.23 -2.91 -0.02 2.13 16 43 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.15 2.21 5.91 -2.91 -0.02 2.19 16 Total: -1.00 -71.66 387.49 -0.26 -71.92 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -1.02 Total: 35.65 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 4.86 Total: -4.85 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.07 Total: -113.93 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.99 Total: -35.36 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -71.66 -0.26 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268324281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.529 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds