Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35129 * 125.62126 * 2 1 4 4 C 1.40366 * 107.12066 * 180.02562 * 3 2 1 5 5 C 1.36546 * 106.70367 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.98317 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00156 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99632 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99880 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47101 * 325.00423 * 9 8 6 11 11 C 1.53004 * 109.46732 * 85.00694 * 9 8 6 12 12 C 1.52999 * 109.47137 * 205.00250 * 9 8 6 13 13 H 1.09004 * 109.47434 * 300.00316 * 12 9 8 14 14 C 1.52997 * 109.47114 * 60.00123 * 12 9 8 15 15 N 1.46498 * 109.46963 * 179.97438 * 12 9 8 16 16 C 1.34777 * 119.99828 * 154.72290 * 15 12 9 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 12 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 12 19 19 S 1.81000 * 109.47389 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99715 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00516 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99710 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00163 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00011 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46850 * 90.00589 * 24 22 20 26 26 H 1.48498 * 109.47329 * 210.00016 * 24 22 20 27 27 H 1.48499 * 109.47220 * 330.01003 * 24 22 20 28 28 O 1.33936 * 125.61417 * 180.29708 * 2 1 3 29 29 H 1.08993 * 109.47172 * 89.99431 * 1 2 3 30 30 H 1.09000 * 109.46809 * 209.99895 * 1 2 3 31 31 H 1.08999 * 109.46738 * 329.99610 * 1 2 3 32 32 H 1.08001 * 126.43905 * 0.02565 * 3 2 1 33 33 H 1.07996 * 126.64726 * 180.02562 * 4 3 2 34 34 H 0.97000 * 120.00517 * 0.02562 * 8 6 5 35 35 H 1.08999 * 109.46966 * 180.02562 * 11 9 8 36 36 H 1.09005 * 109.46425 * 299.99392 * 11 9 8 37 37 H 1.08994 * 109.47427 * 59.99463 * 11 9 8 38 38 H 1.09003 * 109.47189 * 300.00067 * 14 12 9 39 39 H 1.09009 * 109.47238 * 59.99946 * 14 12 9 40 40 H 1.08997 * 109.47293 * 179.97438 * 14 12 9 41 41 H 0.97001 * 120.00384 * 335.00737 * 15 12 9 42 42 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 43 43 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 44 44 H 0.96991 * 119.99795 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0984 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7415 -1.6102 -0.0013 7 8 5.8680 -1.1501 -0.0020 8 7 4.5589 -2.9456 -0.0004 9 6 5.7168 -3.8432 -0.0008 10 1 6.5193 -3.4008 -0.5911 11 6 6.1979 -4.0555 1.4360 12 6 5.3185 -5.1892 -0.6094 13 1 4.5160 -5.6316 -0.0192 14 6 4.8373 -4.9769 -2.0462 15 7 6.4765 -6.0865 -0.6104 16 6 6.2943 -7.4219 -0.6040 17 8 5.1716 -7.8807 -0.6026 18 6 7.4855 -8.3450 -0.5986 19 16 6.9171 -10.0634 -0.5914 20 6 8.4685 -10.8987 -0.5868 21 1 9.3874 -10.3312 -0.5884 22 6 8.5097 -12.2861 -0.5802 23 7 7.3897 -12.9778 -0.5777 24 14 10.1544 -13.1717 -0.5761 25 1 10.5903 -13.3998 0.8251 26 1 10.0153 -14.4773 -1.2698 27 1 11.1650 -12.3421 -1.2800 28 8 2.2869 -1.0888 -0.0056 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9614 2.1260 0.0004 33 1 4.5114 1.2702 -0.0004 34 1 3.6610 -3.3124 0.0005 35 1 7.0596 -4.7230 1.4357 36 1 6.4817 -3.0965 1.8695 37 1 5.3954 -4.4978 2.0262 38 1 3.9759 -4.3090 -2.0459 39 1 5.6399 -4.5344 -2.6365 40 1 4.5540 -5.9358 -2.4799 41 1 7.3745 -5.7196 -0.6114 42 1 8.0880 -8.1657 -1.4890 43 1 8.0868 -8.1570 0.2909 44 1 7.4185 -13.9473 -0.5734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280165301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = -68.047419 kcal Electronic energy + Delta-G solvation = -26127.505640 eV Core-core repulsion = 22172.679305 eV Total energy + Delta-G solvation = -3954.826334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.13181 -40.27752 -39.24542 -36.88043 -34.28992 -33.63523 -32.51310 -32.43621 -31.29003 -30.22287 -28.55375 -27.56996 -25.49512 -24.30078 -22.91751 -22.05636 -21.12416 -20.79471 -20.22505 -18.87064 -17.86626 -16.94493 -16.79864 -16.29217 -15.84237 -15.64391 -15.18432 -14.98801 -14.80966 -14.56333 -14.11457 -13.93331 -13.75570 -13.61381 -13.54564 -13.47283 -13.41209 -13.22175 -12.73684 -12.56375 -12.47059 -12.41500 -12.02388 -11.85627 -11.56183 -11.06966 -11.03356 -10.93371 -10.77138 -10.66926 -10.46491 -9.82767 -9.63730 -9.44302 -9.08134 -8.98753 -8.89633 -8.25353 -6.51212 -6.22663 -3.93264 0.62603 1.88540 2.13348 2.61050 2.80779 3.04265 3.10783 3.22030 3.28281 3.33573 3.72454 4.09362 4.19581 4.24612 4.45849 4.46905 4.70345 4.81251 4.89365 4.90995 5.08716 5.10908 5.12682 5.20288 5.25518 5.29477 5.39061 5.45621 5.51687 5.51760 5.63288 5.66191 5.84099 5.87186 5.92517 5.98683 6.04468 6.11799 6.13752 6.41425 6.56760 7.05159 7.58846 7.63790 7.68601 8.34420 8.55909 9.22879 10.84752 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.001764 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.735583 B =15868.874374 C =16410.790557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.022 3.978 3 C -0.225 4.225 4 C -0.114 4.114 5 C -0.083 4.083 6 C 0.608 3.392 7 O -0.519 6.519 8 N -0.710 5.710 9 C 0.136 3.864 10 H 0.097 0.903 11 C -0.164 4.164 12 C 0.138 3.862 13 H 0.094 0.906 14 C -0.164 4.164 15 N -0.730 5.730 16 C 0.536 3.464 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 O -0.162 6.162 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.407 0.593 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 29.062 1.246 31.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.244 4.244 4 C -0.135 4.135 5 C -0.135 4.135 6 C 0.394 3.606 7 O -0.396 6.396 8 N -0.361 5.361 9 C 0.031 3.969 10 H 0.115 0.885 11 C -0.223 4.223 12 C 0.032 3.968 13 H 0.112 0.888 14 C -0.223 4.223 15 N -0.385 5.385 16 C 0.322 3.678 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 O -0.058 6.058 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.242 0.758 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.234 0.766 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.156 28.090 1.241 30.633 hybrid contribution 2.403 0.189 -0.005 2.410 sum -9.753 28.279 1.236 29.939 Atomic orbital electron populations 1.20447 0.84414 1.04668 1.04140 1.22871 0.94358 0.84030 1.01755 1.21615 0.92322 0.99904 1.10601 1.21965 0.98697 0.92916 0.99873 1.21986 0.81870 0.94605 1.15063 1.16477 0.86084 0.81380 0.76647 1.90895 1.22008 1.76066 1.50654 1.45828 1.10581 1.05232 1.74451 1.21235 0.88580 0.89125 0.97945 0.88503 1.22190 1.02222 1.02530 0.95324 1.20991 0.90177 0.88437 0.97199 0.88809 1.22202 1.01241 1.02776 0.96051 1.45934 1.08877 1.05803 1.77931 1.20307 0.91001 0.81663 0.74811 1.90702 1.25170 1.75634 1.47405 1.23537 0.98944 1.02918 1.05039 1.85384 1.11561 0.89624 1.96726 1.22872 0.92676 0.93900 1.58961 0.90900 1.24992 0.97618 0.96441 0.94516 1.70015 1.26236 1.07179 1.46866 0.86168 0.82202 0.78772 0.78361 1.20268 1.20751 1.19689 1.84008 1.15938 1.35021 1.70874 0.89414 0.89968 0.88848 0.82585 0.82174 0.75756 0.90787 0.91818 0.91971 0.91974 0.92309 0.91189 0.76621 0.89135 0.89134 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.41 36.01 0.37 0.13 16 2 C 0.02 0.15 7.31 -35.41 -0.26 -0.11 16 3 C -0.23 -1.54 10.77 -39.89 -0.43 -1.97 16 4 C -0.11 -0.99 10.62 -39.39 -0.42 -1.41 16 5 C -0.08 -0.82 7.13 -36.80 -0.26 -1.08 16 6 C 0.61 6.57 7.75 -12.86 -0.10 6.47 16 7 O -0.52 -7.02 16.53 5.20 0.09 -6.93 16 8 N -0.71 -6.42 4.38 -55.12 -0.24 -6.66 16 9 C 0.14 1.29 2.21 -67.93 -0.15 1.14 16 10 H 0.10 0.97 7.58 -51.93 -0.39 0.57 16 11 C -0.16 -1.57 9.33 37.16 0.35 -1.23 16 12 C 0.14 1.51 2.21 -67.93 -0.15 1.36 16 13 H 0.09 1.16 7.57 -51.93 -0.39 0.77 16 14 C -0.16 -1.76 9.33 37.16 0.35 -1.41 16 15 N -0.73 -9.11 4.38 -53.81 -0.24 -9.35 16 16 C 0.54 9.49 7.82 -10.98 -0.09 9.41 16 17 O -0.52 -11.13 15.52 5.55 0.09 -11.04 16 18 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 24 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 O -0.16 -1.42 10.40 4.98 0.05 -1.37 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.41 3.11 8.14 -40.82 -0.33 2.78 16 35 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 39 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.40 3.94 8.39 -40.82 -0.34 3.60 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -35.88 393.99 -7.61 -43.50 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.43 Total: 3.05 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.37 Total: -4.34 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.26 Total: -41.30 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.22 Total: -19.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.88 -7.61 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280165301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.549 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds