Wall clock time and date at job start Sat Apr 11 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35126 * 125.61911 * 2 1 4 4 C 1.40360 * 107.11550 * 180.02562 * 3 2 1 5 5 C 1.36546 * 106.71115 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98965 * 179.97438 * 5 4 3 7 7 O 1.21692 * 120.00040 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99986 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00258 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47062 * 34.99791 * 9 8 6 11 11 C 1.52997 * 109.46953 * 275.00286 * 9 8 6 12 12 C 1.52992 * 109.47337 * 154.99817 * 9 8 6 13 13 H 1.08998 * 109.46862 * 60.00710 * 12 9 8 14 14 C 1.52997 * 109.47482 * 300.00145 * 12 9 8 15 15 N 1.46506 * 109.46999 * 179.97438 * 12 9 8 16 16 C 1.34777 * 120.00033 * 205.00067 * 15 12 9 17 17 O 1.21287 * 119.99681 * 0.02562 * 16 15 12 18 18 C 1.50696 * 120.00198 * 180.02562 * 16 15 12 19 19 S 1.81001 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.76197 * 99.99966 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00275 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00061 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99864 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00055 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47562 * 89.99701 * 24 22 20 26 26 H 1.48506 * 109.47053 * 209.99646 * 24 22 20 27 27 H 1.48496 * 109.47223 * 329.99479 * 24 22 20 28 28 O 1.33932 * 125.61490 * 180.28963 * 2 1 3 29 29 H 1.09009 * 109.47012 * 89.99978 * 1 2 3 30 30 H 1.08995 * 109.47316 * 209.99713 * 1 2 3 31 31 H 1.08996 * 109.46910 * 330.00523 * 1 2 3 32 32 H 1.07998 * 126.44137 * 0.02562 * 3 2 1 33 33 H 1.08003 * 126.64704 * 180.02562 * 4 3 2 34 34 H 0.97002 * 119.99559 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47289 * 299.99920 * 11 9 8 36 36 H 1.09004 * 109.47261 * 59.99664 * 11 9 8 37 37 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 14 12 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 14 12 9 40 40 H 1.09004 * 109.47261 * 179.97438 * 14 12 9 41 41 H 0.96992 * 120.00062 * 25.00521 * 15 12 9 42 42 H 1.08997 * 109.47364 * 300.00354 * 18 16 15 43 43 H 1.09001 * 109.46822 * 60.00123 * 18 16 15 44 44 H 0.96998 * 119.99957 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0984 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5823 -0.7118 -0.0004 6 6 4.7414 -1.6103 -0.0013 7 8 5.8680 -1.1501 -0.0020 8 7 4.5589 -2.9457 -0.0015 9 6 5.7167 -3.8432 -0.0019 10 1 6.5198 -3.4006 0.5874 11 6 6.1964 -4.0561 -1.4390 12 6 5.3190 -5.1889 0.6077 13 1 4.5160 -5.6316 0.0183 14 6 4.8392 -4.9761 2.0448 15 7 6.4767 -6.0867 0.6067 16 6 6.2940 -7.4221 0.6064 17 8 5.1711 -7.8804 0.6066 18 6 7.4848 -8.3456 0.6060 19 16 6.9159 -10.0638 0.6050 20 6 8.4670 -10.8997 0.6054 21 1 9.3861 -10.3326 0.6065 22 6 8.5077 -12.2871 0.6043 23 7 7.3875 -12.9783 0.6035 24 14 10.1521 -13.1732 0.6055 25 1 10.5863 -13.4092 2.0058 26 1 10.0134 -14.4750 -0.0957 27 1 11.1638 -12.3402 -0.0928 28 8 2.2870 -1.0888 -0.0055 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.9613 2.1259 0.0004 33 1 4.5114 1.2701 -0.0004 34 1 3.6609 -3.3124 -0.0006 35 1 5.3934 -4.4986 -2.0284 36 1 6.4798 -3.0972 -1.8733 37 1 7.0582 -4.7235 -1.4393 38 1 3.9777 -4.3083 2.0451 39 1 5.6423 -4.5335 2.6341 40 1 4.5554 -5.9349 2.4789 41 1 7.3747 -5.7201 0.6062 42 1 8.0867 -8.1620 -0.2840 43 1 8.0870 -8.1623 1.4959 44 1 7.4159 -13.9479 0.6031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280165303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:50 Heat of formation + Delta-G solvation = -93.224215 kcal Electronic energy + Delta-G solvation = -26128.288848 eV Core-core repulsion = 22172.370766 eV Total energy + Delta-G solvation = -3955.918082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.72764 -41.25957 -40.43701 -37.94320 -35.30000 -34.57703 -34.25871 -33.09785 -32.36823 -31.10397 -29.91103 -28.12252 -27.64456 -25.13200 -23.73481 -22.65727 -22.01245 -21.80099 -21.18190 -19.93792 -19.50170 -18.09872 -17.54689 -17.33073 -16.96254 -16.87189 -16.45266 -16.36735 -15.96127 -15.77753 -15.34579 -15.01514 -14.77185 -14.49339 -14.41666 -14.19921 -14.04491 -13.98802 -13.78200 -13.72122 -13.36902 -13.25883 -13.15377 -12.89364 -12.78881 -12.76400 -12.60789 -12.54925 -11.85136 -11.71278 -11.54569 -11.13727 -11.06426 -10.96319 -10.49628 -10.26554 -10.12878 -9.49055 -8.65036 -8.34193 -6.11549 -0.04226 1.24343 1.32554 1.42296 1.42723 1.51770 1.59441 1.61796 1.92911 2.04501 2.27763 2.45777 3.00116 3.31110 3.35707 3.58839 3.82345 3.88925 3.93476 3.96415 4.05488 4.31306 4.36180 4.42498 4.52501 4.53408 4.58767 4.65415 4.67314 4.72626 4.73173 4.80406 4.89796 4.94601 5.13604 5.17096 5.19888 5.21622 5.42867 5.43653 5.45387 5.81869 6.20547 6.31135 6.46954 6.89697 7.07526 7.22693 8.74892 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.001764 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.334089 B =15871.376636 C =16413.954517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.025 3.975 3 C -0.232 4.232 4 C -0.118 4.118 5 C -0.112 4.112 6 C 0.609 3.391 7 O -0.552 6.552 8 N -0.701 5.701 9 C 0.147 3.853 10 H 0.099 0.901 11 C -0.162 4.162 12 C 0.143 3.857 13 H 0.082 0.918 14 C -0.159 4.159 15 N -0.705 5.705 16 C 0.541 3.459 17 O -0.559 6.559 18 C -0.131 4.131 19 S -0.148 6.148 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.259 1.259 28 O -0.171 6.171 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.414 0.586 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.416 0.584 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.398 31.026 -1.305 32.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.250 4.250 4 C -0.138 4.138 5 C -0.164 4.164 6 C 0.397 3.603 7 O -0.432 6.432 8 N -0.352 5.352 9 C 0.042 3.958 10 H 0.117 0.883 11 C -0.220 4.220 12 C 0.037 3.963 13 H 0.101 0.899 14 C -0.218 4.218 15 N -0.360 5.360 16 C 0.327 3.673 17 O -0.437 6.437 18 C -0.282 4.282 19 S 0.079 5.921 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.183 1.183 28 O -0.068 6.068 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.200 0.800 33 H 0.180 0.820 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.254 0.746 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.628 30.100 -1.313 32.294 hybrid contribution 2.128 -0.238 0.010 2.141 sum -9.500 29.862 -1.302 31.364 Atomic orbital electron populations 1.20672 0.81711 1.05955 1.05326 1.23679 0.95828 0.83518 0.99720 1.21945 0.91341 1.01284 1.10479 1.22231 0.99878 0.92766 0.98975 1.21809 0.82149 0.94777 1.17634 1.16591 0.86047 0.81664 0.75985 1.90866 1.23288 1.76646 1.52448 1.45731 1.10827 1.04802 1.73862 1.21064 0.88753 0.88106 0.97857 0.88311 1.22167 1.02352 1.02375 0.95097 1.21026 0.89150 0.88562 0.97567 0.89942 1.22146 1.02305 1.01871 0.95445 1.45637 1.10490 1.04142 1.75746 1.19970 0.89603 0.82971 0.74773 1.90697 1.26413 1.76712 1.49855 1.23382 0.99893 0.98064 1.06903 1.85540 1.13561 0.95939 1.97047 1.23216 0.92903 0.94578 1.58780 0.89934 1.26100 1.01817 0.97381 0.93785 1.70177 1.28944 1.07550 1.48050 0.84973 0.77032 0.77348 0.78757 1.19372 1.20327 1.18251 1.83997 1.15652 1.35973 1.71173 0.88104 0.89579 0.86661 0.80025 0.81959 0.74882 0.92181 0.92260 0.90227 0.90214 0.91369 0.93647 0.74627 0.87090 0.87222 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.41 71.24 0.74 0.46 16 2 C 0.02 0.29 7.31 24.97 0.18 0.48 16 3 C -0.23 -2.74 10.77 22.07 0.24 -2.50 16 4 C -0.12 -1.97 10.62 22.39 0.24 -1.73 16 5 C -0.11 -2.15 7.13 24.07 0.17 -1.97 16 6 C 0.61 12.98 7.75 86.44 0.67 13.65 16 7 O -0.55 -14.88 16.53 -4.32 -0.07 -14.95 16 8 N -0.70 -12.15 4.38 -446.55 -1.96 -14.11 16 9 C 0.15 2.62 2.21 44.99 0.10 2.72 16 10 H 0.10 1.81 7.58 -2.39 -0.02 1.79 16 11 C -0.16 -2.91 9.33 71.98 0.67 -2.24 16 12 C 0.14 2.98 2.21 44.99 0.10 3.08 16 13 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 14 C -0.16 -3.26 9.33 71.98 0.67 -2.58 16 15 N -0.71 -16.59 4.38 -442.54 -1.94 -18.53 16 16 C 0.54 18.88 7.81 87.66 0.68 19.57 16 17 O -0.56 -24.58 15.52 -3.05 -0.05 -24.63 16 18 C -0.13 -5.03 6.16 71.23 0.44 -4.59 16 19 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 20 C -0.55 -30.99 9.50 67.95 0.65 -30.34 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -55.68 13.22 21.65 0.29 -55.39 16 24 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 28 O -0.17 -2.83 10.40 -5.03 -0.05 -2.88 16 29 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.41 6.02 8.14 -92.71 -0.75 5.26 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.08 1.33 7.44 -2.39 -0.02 1.32 16 38 H 0.08 1.35 7.44 -2.39 -0.02 1.33 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.42 7.20 8.39 -92.71 -0.78 6.42 16 42 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 43 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.13 393.98 2.60 -77.53 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.50 Total: 21.48 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 6.02 Total: -4.76 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -3.61 Total: -88.03 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.17 Total: -42.46 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -80.13 2.60 -77.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280165303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.693 kcal (2) G-P(sol) polarization free energy of solvation -80.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds