Wall clock time and date at job start Sat Apr 11 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.64454 * 2 1 4 4 C 1.35135 * 107.10939 * 179.97438 * 3 2 1 5 5 O 1.33922 * 108.77042 * 359.75289 * 4 3 2 6 6 C 1.34914 * 109.38599 * 0.40511 * 5 4 3 7 7 C 1.46658 * 125.99084 * 179.86121 * 6 5 4 8 8 O 1.21693 * 120.00161 * 179.69184 * 7 6 5 9 9 N 1.34777 * 119.99639 * 359.68856 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72443 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 13 13 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 14 14 H 1.09002 * 109.46999 * 64.99981 * 13 10 9 15 15 C 1.52998 * 109.47375 * 305.00139 * 13 10 9 16 16 N 1.46505 * 109.47332 * 185.00138 * 13 10 9 17 17 C 1.34773 * 119.99719 * 205.00348 * 16 13 10 18 18 O 1.21284 * 120.00408 * 359.97438 * 17 16 13 19 19 C 1.50700 * 119.99552 * 180.02562 * 17 16 13 20 20 S 1.81003 * 109.47187 * 179.97438 * 19 17 16 21 21 C 1.76203 * 100.00106 * 179.97438 * 20 19 17 22 22 H 1.07990 * 119.99965 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99802 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99796 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47182 * 60.00361 * 25 23 21 27 27 H 1.48500 * 109.47057 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47340 * 300.00010 * 25 23 21 29 29 H 1.08998 * 109.47177 * 270.02554 * 1 2 3 30 30 H 1.08996 * 109.47074 * 30.02751 * 1 2 3 31 31 H 1.09006 * 109.47217 * 150.02578 * 1 2 3 32 32 H 1.07993 * 126.44548 * 359.97438 * 3 2 1 33 33 H 1.08005 * 125.61421 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 36 36 H 1.08996 * 109.47098 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 38 38 H 1.09000 * 109.46935 * 300.00430 * 15 13 10 39 39 H 1.09005 * 109.46766 * 59.99450 * 15 13 10 40 40 H 1.08994 * 109.47543 * 179.97438 * 15 13 10 41 41 H 0.96993 * 119.99762 * 24.99314 * 16 13 10 42 42 H 1.09001 * 109.47553 * 299.99406 * 19 17 16 43 43 H 1.09002 * 109.47762 * 59.99755 * 19 17 16 44 44 H 0.96996 * 119.99969 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6743 0.0006 5 8 3.6005 -0.6648 0.0064 6 6 2.3220 -1.0956 0.0007 7 6 1.8842 -2.4953 0.0013 8 8 0.6967 -2.7614 0.0014 9 7 2.7970 -3.4868 0.0019 10 6 2.3597 -4.8850 0.0087 11 1 1.4472 -4.9774 0.5976 12 6 2.0891 -5.3418 -1.4262 13 6 3.4546 -5.7588 0.6241 14 1 3.5853 -5.4925 1.6730 15 6 4.7686 -5.5343 -0.1267 16 7 3.0690 -7.1686 0.5226 17 6 3.5697 -8.0684 1.3922 18 8 4.3398 -7.7112 2.2583 19 6 3.1735 -9.5186 1.2874 20 16 4.0065 -10.4669 2.5847 21 6 3.3804 -12.0768 2.2368 22 1 2.6933 -12.2233 1.4167 23 6 3.7705 -13.1566 3.0169 24 7 4.6078 -12.9778 4.0168 25 14 3.1074 -14.8633 2.6476 26 1 3.4953 -15.2577 1.2695 27 1 3.6735 -15.8348 3.6177 28 1 1.6268 -14.8546 2.7618 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8903 -0.5135 32 1 2.0307 2.1594 -0.0004 33 1 4.5047 1.2915 0.0011 34 1 3.7436 -3.2747 0.0022 35 1 3.0017 -5.2493 -2.0152 36 1 1.7633 -6.3819 -1.4211 37 1 1.3092 -4.7192 -1.8647 38 1 4.6379 -5.8005 -1.1755 39 1 5.0555 -4.4854 -0.0512 40 1 5.5487 -6.1564 0.3120 41 1 2.4532 -7.4542 -0.1702 42 1 2.0938 -9.6098 1.4066 43 1 3.4651 -9.9054 0.3110 44 1 4.8806 -13.7325 4.5616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280175767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:01 Heat of formation + Delta-G solvation = -62.932483 kcal Electronic energy + Delta-G solvation = -26326.197220 eV Core-core repulsion = 22371.592686 eV Total energy + Delta-G solvation = -3954.604534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.12241 -40.32674 -39.24918 -37.06000 -34.68289 -33.95861 -32.43140 -31.68615 -30.69350 -29.74438 -28.51603 -27.88382 -25.50838 -25.07437 -23.42934 -21.92362 -20.72421 -20.42943 -19.94257 -18.73016 -17.88259 -16.82983 -16.66068 -16.57820 -16.16524 -15.80738 -15.10830 -14.90903 -14.80450 -14.73465 -14.49425 -14.01201 -13.84851 -13.48575 -13.43055 -13.30484 -13.19203 -12.94335 -12.83912 -12.57463 -12.47474 -12.18527 -12.05349 -11.93047 -11.26258 -11.10985 -11.04697 -11.03779 -10.77206 -10.48061 -10.13322 -9.83384 -9.59370 -9.43752 -9.07377 -9.00519 -8.98614 -8.25095 -6.50660 -6.21881 -3.92646 0.64906 1.91222 2.24504 2.68678 2.80111 3.04367 3.10359 3.23585 3.27921 3.32369 3.71048 4.20145 4.20881 4.32014 4.34930 4.51013 4.62187 4.86820 5.05595 5.07273 5.10553 5.13188 5.15602 5.18683 5.32300 5.37146 5.39591 5.46687 5.59404 5.62544 5.64151 5.74566 5.77856 5.87317 5.91643 5.95977 6.08392 6.12680 6.16634 6.41253 6.56688 7.07065 7.58996 7.63903 7.71463 8.34760 8.56375 9.23361 10.85462 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030633 B = 0.001800 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.838445 B =15547.549076 C =15874.693906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.084 4.084 3 C -0.226 4.226 4 C -0.001 4.001 5 O -0.164 6.164 6 C -0.089 4.089 7 C 0.606 3.394 8 O -0.515 6.515 9 N -0.712 5.712 10 C 0.136 3.864 11 H 0.099 0.901 12 C -0.168 4.168 13 C 0.138 3.862 14 H 0.095 0.905 15 C -0.169 4.169 16 N -0.732 5.732 17 C 0.535 3.465 18 O -0.515 6.515 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.211 0.789 34 H 0.406 0.594 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 28.089 -12.979 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 C -0.245 4.245 4 C -0.071 4.071 5 O -0.059 6.059 6 C -0.141 4.141 7 C 0.393 3.607 8 O -0.393 6.393 9 N -0.365 5.365 10 C 0.031 3.969 11 H 0.117 0.883 12 C -0.226 4.226 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.227 4.227 16 N -0.388 5.388 17 C 0.321 3.679 18 O -0.389 6.389 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.228 0.772 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.407 28.160 -11.363 30.556 hybrid contribution -1.060 -1.204 -1.564 2.240 sum -4.467 26.955 -12.927 30.226 Atomic orbital electron populations 1.20450 0.88111 1.03664 1.03071 1.20679 0.97754 0.90984 0.99280 1.21773 0.92445 1.00242 1.10076 1.24395 1.00044 0.80537 1.02145 1.84057 1.28287 1.22790 1.70802 1.21819 0.81589 0.94716 1.15929 1.16490 0.85736 0.81809 0.76659 1.90864 1.15640 1.82289 1.50485 1.45975 1.10178 1.05641 1.74712 1.21187 0.98366 0.79528 0.97827 0.88274 1.22256 1.02697 1.01833 0.95834 1.20960 0.93069 0.81457 1.01349 0.88694 1.22275 0.97824 1.01567 1.01043 1.46074 1.50493 1.06847 1.35407 1.20332 0.79943 0.87328 0.80305 1.90704 1.33792 1.80273 1.34085 1.23538 1.05421 0.94354 1.07146 1.85392 1.59792 1.01916 1.36154 1.22828 1.32906 0.93177 1.19554 0.90950 1.24991 0.94829 0.99273 0.94475 1.70006 1.31090 1.31963 1.17231 0.86222 0.79147 0.81852 0.78269 1.19950 1.20814 1.19927 0.90637 0.91431 0.89413 0.82601 0.77240 0.75679 0.91577 0.91152 0.91540 0.91770 0.92216 0.90913 0.76537 0.89120 0.89145 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.82 36.01 0.35 -0.42 16 2 C -0.08 -0.75 6.20 -104.43 -0.65 -1.40 16 3 C -0.23 -1.48 10.83 -39.89 -0.43 -1.91 16 4 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 5 O -0.16 -1.35 10.40 5.02 0.05 -1.30 16 6 C -0.09 -0.87 7.13 -36.80 -0.26 -1.13 16 7 C 0.61 6.58 7.75 -12.86 -0.10 6.48 16 8 O -0.52 -6.79 14.40 5.20 0.07 -6.71 16 9 N -0.71 -6.44 4.98 -55.12 -0.27 -6.71 16 10 C 0.14 1.29 2.62 -67.93 -0.18 1.11 16 11 H 0.10 1.09 7.57 -51.93 -0.39 0.70 16 12 C -0.17 -1.36 9.00 37.16 0.33 -1.02 16 13 C 0.14 1.52 2.62 -67.93 -0.18 1.34 16 14 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 15 C -0.17 -1.65 9.00 37.16 0.33 -1.31 16 16 N -0.73 -9.22 4.99 -53.80 -0.27 -9.49 16 17 C 0.53 9.60 7.81 -10.99 -0.09 9.51 16 18 O -0.51 -11.27 15.53 5.55 0.09 -11.18 16 19 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 25 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.84 6.44 -51.93 -0.33 0.51 16 32 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.21 0.31 8.06 -52.48 -0.42 -0.11 16 34 H 0.41 3.07 6.33 -40.82 -0.26 2.81 16 35 H 0.07 0.49 6.57 -51.93 -0.34 0.14 16 36 H 0.07 0.50 6.29 -51.93 -0.33 0.17 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 39 H 0.06 0.45 6.29 -51.93 -0.33 0.13 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 3.96 6.58 -40.82 -0.27 3.69 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -35.93 382.26 -7.06 -42.99 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.91 Total: 3.61 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.08 Total: -4.13 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.19 Total: -41.56 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.21 Total: -19.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.93 -7.06 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280175767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.943 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds