Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.64454 * 2 1 4 4 C 1.35135 * 107.10939 * 179.97438 * 3 2 1 5 5 O 1.33922 * 108.77042 * 359.75289 * 4 3 2 6 6 C 1.34914 * 109.38599 * 0.40511 * 5 4 3 7 7 C 1.46658 * 125.99084 * 179.86121 * 6 5 4 8 8 O 1.21693 * 120.00161 * 179.69184 * 7 6 5 9 9 N 1.34777 * 119.99639 * 359.68856 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72443 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 13 13 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 14 14 H 1.09002 * 109.46999 * 64.99981 * 13 10 9 15 15 C 1.52998 * 109.47375 * 305.00139 * 13 10 9 16 16 N 1.46505 * 109.47332 * 185.00138 * 13 10 9 17 17 C 1.34773 * 119.99719 * 205.00348 * 16 13 10 18 18 O 1.21284 * 120.00408 * 359.97438 * 17 16 13 19 19 C 1.50700 * 119.99552 * 180.02562 * 17 16 13 20 20 S 1.81003 * 109.47187 * 179.97438 * 19 17 16 21 21 C 1.76203 * 100.00106 * 179.97438 * 20 19 17 22 22 H 1.07990 * 119.99965 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99802 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00132 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99796 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47182 * 60.00361 * 25 23 21 27 27 H 1.48500 * 109.47057 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47340 * 300.00010 * 25 23 21 29 29 H 1.08998 * 109.47177 * 270.02554 * 1 2 3 30 30 H 1.08996 * 109.47074 * 30.02751 * 1 2 3 31 31 H 1.09006 * 109.47217 * 150.02578 * 1 2 3 32 32 H 1.07993 * 126.44548 * 359.97438 * 3 2 1 33 33 H 1.08005 * 125.61421 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 36 36 H 1.08996 * 109.47098 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 38 38 H 1.09000 * 109.46935 * 300.00430 * 15 13 10 39 39 H 1.09005 * 109.46766 * 59.99450 * 15 13 10 40 40 H 1.08994 * 109.47543 * 179.97438 * 15 13 10 41 41 H 0.96993 * 119.99762 * 24.99314 * 16 13 10 42 42 H 1.09001 * 109.47553 * 299.99406 * 19 17 16 43 43 H 1.09002 * 109.47762 * 59.99755 * 19 17 16 44 44 H 0.96996 * 119.99969 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6743 0.0006 5 8 3.6005 -0.6648 0.0064 6 6 2.3220 -1.0956 0.0007 7 6 1.8842 -2.4953 0.0013 8 8 0.6967 -2.7614 0.0014 9 7 2.7970 -3.4868 0.0019 10 6 2.3597 -4.8850 0.0087 11 1 1.4472 -4.9774 0.5976 12 6 2.0891 -5.3418 -1.4262 13 6 3.4546 -5.7588 0.6241 14 1 3.5853 -5.4925 1.6730 15 6 4.7686 -5.5343 -0.1267 16 7 3.0690 -7.1686 0.5226 17 6 3.5697 -8.0684 1.3922 18 8 4.3398 -7.7112 2.2583 19 6 3.1735 -9.5186 1.2874 20 16 4.0065 -10.4669 2.5847 21 6 3.3804 -12.0768 2.2368 22 1 2.6933 -12.2233 1.4167 23 6 3.7705 -13.1566 3.0169 24 7 4.6078 -12.9778 4.0168 25 14 3.1074 -14.8633 2.6476 26 1 3.4953 -15.2577 1.2695 27 1 3.6735 -15.8348 3.6177 28 1 1.6268 -14.8546 2.7618 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3634 -0.8903 -0.5135 32 1 2.0307 2.1594 -0.0004 33 1 4.5047 1.2915 0.0011 34 1 3.7436 -3.2747 0.0022 35 1 3.0017 -5.2493 -2.0152 36 1 1.7633 -6.3819 -1.4211 37 1 1.3092 -4.7192 -1.8647 38 1 4.6379 -5.8005 -1.1755 39 1 5.0555 -4.4854 -0.0512 40 1 5.5487 -6.1564 0.3120 41 1 2.4532 -7.4542 -0.1702 42 1 2.0938 -9.6098 1.4066 43 1 3.4651 -9.9054 0.3110 44 1 4.8806 -13.7325 4.5616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280175767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = -89.017021 kcal Electronic energy + Delta-G solvation = -26327.328331 eV Core-core repulsion = 22371.592686 eV Total energy + Delta-G solvation = -3955.735644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.68584 -41.30223 -40.42224 -38.11034 -35.46562 -34.84791 -34.57509 -32.72197 -31.46881 -30.55489 -29.79288 -28.53901 -27.65219 -25.89158 -24.17824 -22.60217 -21.84398 -21.15256 -20.93185 -19.91252 -19.33094 -18.03386 -17.47806 -17.32746 -17.14794 -16.87243 -16.70284 -16.42989 -16.01740 -15.65311 -15.56462 -15.33475 -14.77815 -14.53437 -14.43977 -14.19134 -14.06425 -13.90333 -13.68281 -13.53166 -13.40046 -13.24369 -13.16229 -12.86441 -12.85017 -12.77965 -12.61026 -12.14212 -11.99315 -11.73768 -11.29630 -11.12268 -10.97176 -10.68299 -10.38188 -10.27218 -10.20691 -9.59004 -8.65681 -8.33942 -6.11792 0.00432 1.24832 1.40088 1.44314 1.44469 1.53415 1.59345 1.66709 2.01671 2.05707 2.27976 2.43341 3.00141 3.32004 3.41516 3.70636 3.77829 3.80848 3.93864 3.95327 4.05857 4.30263 4.33528 4.42410 4.52275 4.52782 4.62486 4.64672 4.65846 4.75126 4.77163 4.88513 4.91394 5.10733 5.11981 5.17625 5.26609 5.37164 5.42037 5.42696 5.46639 5.84165 6.20350 6.34790 6.46092 6.94584 7.07373 7.21737 8.74918 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030633 B = 0.001800 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.838445 B =15547.549076 C =15874.693906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.094 4.094 3 C -0.238 4.238 4 C 0.015 3.985 5 O -0.171 6.171 6 C -0.121 4.121 7 C 0.604 3.396 8 O -0.548 6.548 9 N -0.704 5.704 10 C 0.145 3.855 11 H 0.083 0.917 12 C -0.164 4.164 13 C 0.141 3.859 14 H 0.071 0.929 15 C -0.164 4.164 16 N -0.706 5.706 17 C 0.538 3.462 18 O -0.561 6.561 19 C -0.131 4.131 20 S -0.150 6.150 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.181 0.819 33 H 0.254 0.746 34 H 0.414 0.586 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.416 0.584 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 29.248 -15.224 33.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.256 4.256 4 C -0.054 4.054 5 O -0.067 6.067 6 C -0.172 4.172 7 C 0.392 3.608 8 O -0.428 6.428 9 N -0.357 5.357 10 C 0.040 3.960 11 H 0.101 0.899 12 C -0.222 4.222 13 C 0.035 3.965 14 H 0.090 0.910 15 C -0.222 4.222 16 N -0.363 5.363 17 C 0.324 3.676 18 O -0.438 6.438 19 C -0.282 4.282 20 S 0.077 5.923 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.187 1.187 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.198 0.802 33 H 0.270 0.730 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.255 0.745 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.839 29.345 -13.660 32.595 hybrid contribution -0.927 -1.343 -0.911 1.869 sum -4.766 28.001 -14.571 31.923 Atomic orbital electron populations 1.20435 0.88071 1.03694 1.02984 1.21030 0.98238 0.91881 0.98559 1.22105 0.92380 1.00756 1.10393 1.25332 1.01401 0.79665 0.99011 1.84049 1.27437 1.24195 1.71006 1.21632 0.82557 0.94329 1.18722 1.16683 0.85455 0.82577 0.76122 1.90838 1.16860 1.82951 1.52165 1.45879 1.10438 1.05159 1.74198 1.21016 0.96822 0.79576 0.98571 0.89898 1.22240 1.03169 1.02311 0.94473 1.21001 0.94562 0.80337 1.00601 0.91033 1.22231 0.95784 1.02652 1.01509 1.45791 1.49399 1.06888 1.34175 1.20039 0.79742 0.87268 0.80558 1.90697 1.36096 1.80767 1.36254 1.23384 1.05437 0.94413 1.04980 1.85565 1.62081 1.03949 1.40660 1.23182 1.32978 0.93459 1.19880 0.89857 1.26122 0.94914 1.04068 0.94056 1.70176 1.32686 1.33354 1.18532 0.85013 0.78748 0.75792 0.78505 1.18611 1.20451 1.18738 0.90761 0.89333 0.91388 0.80195 0.72973 0.74733 0.90215 0.89905 0.92253 0.89860 0.89848 0.93591 0.74530 0.87231 0.86932 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.82 71.24 0.70 -0.82 16 2 C -0.09 -1.61 6.20 -19.74 -0.12 -1.73 16 3 C -0.24 -2.55 10.83 22.07 0.24 -2.31 16 4 C 0.02 0.13 12.08 67.10 0.81 0.94 16 5 O -0.17 -2.53 10.40 -4.96 -0.05 -2.58 16 6 C -0.12 -2.32 7.13 24.07 0.17 -2.15 16 7 C 0.60 13.19 7.75 86.44 0.67 13.86 16 8 O -0.55 -14.92 14.40 -4.33 -0.06 -14.99 16 9 N -0.70 -12.32 4.98 -446.52 -2.23 -14.55 16 10 C 0.15 2.64 2.62 44.99 0.12 2.75 16 11 H 0.08 1.82 7.57 -2.39 -0.02 1.81 16 12 C -0.16 -2.33 9.00 71.98 0.65 -1.68 16 13 C 0.14 3.01 2.62 44.99 0.12 3.13 16 14 H 0.07 1.93 7.58 -2.39 -0.02 1.91 16 15 C -0.16 -2.97 9.00 71.98 0.65 -2.32 16 16 N -0.71 -16.96 4.99 -442.52 -2.21 -19.17 16 17 C 0.54 19.22 7.81 87.66 0.68 19.90 16 18 O -0.56 -25.26 15.53 -3.04 -0.05 -25.30 16 19 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 20 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 21 C -0.55 -31.10 9.50 67.95 0.65 -30.46 16 22 H 0.08 4.37 7.80 -2.92 -0.02 4.35 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 25 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.36 6.44 -2.38 -0.02 1.34 16 32 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.25 -0.39 8.06 -2.91 -0.02 -0.42 16 34 H 0.41 5.78 6.33 -92.71 -0.59 5.19 16 35 H 0.08 0.94 6.57 -2.39 -0.02 0.92 16 36 H 0.08 0.96 6.29 -2.39 -0.02 0.94 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.21 6.56 -2.39 -0.02 1.19 16 39 H 0.08 1.11 6.29 -2.38 -0.02 1.10 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.42 7.26 6.58 -92.71 -0.61 6.65 16 42 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 43 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 44 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -82.10 382.26 2.65 -79.46 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.15 Total: 20.97 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 6.23 Total: -4.30 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -4.15 Total: -89.39 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.16 Total: -42.87 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -82.10 2.65 -79.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280175767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.560 kcal (2) G-P(sol) polarization free energy of solvation -82.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds