Wall clock time and date at job start Sat Apr 11 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40358 * 126.64545 * 2 1 4 4 C 1.35132 * 107.11378 * 179.84068 * 3 2 1 5 5 O 1.33926 * 108.76759 * 0.42529 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72933 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47287 * 295.00204 * 11 10 9 13 13 C 1.52997 * 109.47123 * 175.00202 * 11 10 9 14 14 N 1.46504 * 109.47163 * 54.99789 * 11 10 9 15 15 C 1.46503 * 119.99615 * 60.00276 * 14 11 10 16 16 C 1.34767 * 120.00113 * 239.99960 * 14 11 10 17 17 O 1.21283 * 120.00225 * 0.02562 * 16 14 11 18 18 C 1.50710 * 119.99791 * 180.02562 * 16 14 11 19 19 S 1.81006 * 109.46963 * 180.02562 * 18 16 14 20 20 C 1.76194 * 99.99652 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00648 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99621 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00327 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99639 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47531 * 90.00174 * 24 22 20 26 26 H 1.48505 * 109.46755 * 209.99839 * 24 22 20 27 27 H 1.48495 * 109.47481 * 329.99414 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68806 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68907 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68887 * 1 2 3 31 31 H 1.07998 * 126.44501 * 359.97238 * 3 2 1 32 32 H 1.08006 * 125.61408 * 180.12228 * 4 3 2 33 33 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 35 35 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 36 36 H 1.09005 * 109.47200 * 299.99626 * 13 11 10 37 37 H 1.09001 * 109.47477 * 60.00228 * 13 11 10 38 38 H 1.09005 * 109.46809 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.46973 * 89.99878 * 15 14 11 40 40 H 1.09000 * 109.47027 * 210.00014 * 15 14 11 41 41 H 1.08997 * 109.47075 * 329.99737 * 15 14 11 42 42 H 1.08998 * 109.47089 * 299.99858 * 18 16 14 43 43 H 1.08996 * 109.46744 * 59.99978 * 18 16 14 44 44 H 0.96998 * 120.00163 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0036 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0140 8 8 0.6968 -2.7614 -0.0159 9 7 2.7971 -3.4868 -0.0194 10 6 2.3598 -4.8850 -0.0269 11 6 3.5843 -5.8023 -0.0312 12 1 4.1359 -5.6677 -0.9617 13 6 3.1308 -7.2588 0.0866 14 7 4.4497 -5.4669 1.1023 15 6 3.9365 -5.5682 2.4707 16 6 5.7179 -5.0654 0.8862 17 8 6.1426 -4.9811 -0.2467 18 6 6.6083 -4.7209 2.0524 19 16 8.2367 -4.2203 1.4409 20 6 9.0471 -3.8841 2.9688 21 1 8.5171 -4.0126 3.9010 22 6 10.3668 -3.4539 2.9744 23 7 11.0130 -3.2978 1.8384 24 14 11.2261 -3.0981 4.5944 25 1 11.8871 -4.3337 5.0861 26 1 12.2464 -2.0384 4.3911 27 1 10.2283 -2.6393 5.5938 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 2.0306 2.1594 -0.0004 32 1 4.5046 1.2916 0.0064 33 1 3.7436 -3.2746 -0.0183 34 1 1.7610 -5.0831 0.8620 35 1 1.7609 -5.0736 -0.9179 36 1 2.5793 -7.3935 1.0171 37 1 2.4870 -7.5083 -0.7568 38 1 4.0033 -7.9122 0.0840 39 1 4.1264 -6.5697 2.8568 40 1 4.4376 -4.8344 3.1020 41 1 2.8636 -5.3759 2.4716 42 1 6.1653 -3.9013 2.6181 43 1 6.7144 -5.5925 2.6982 44 1 11.9353 -2.9975 1.8424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280427475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:12 Heat of formation + Delta-G solvation = -57.791917 kcal Electronic energy + Delta-G solvation = -27327.625394 eV Core-core repulsion = 23373.243772 eV Total energy + Delta-G solvation = -3954.381622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.82838 -40.17430 -39.21116 -36.59816 -34.67071 -33.94341 -32.46217 -32.20115 -30.58536 -28.79569 -28.10680 -26.90632 -26.26694 -25.51750 -22.96138 -21.82507 -21.28733 -20.10862 -19.17991 -18.21184 -17.77607 -17.02064 -16.51838 -16.41236 -16.22863 -15.63313 -15.42772 -14.90027 -14.83035 -14.40686 -14.14368 -13.72118 -13.46943 -13.31967 -13.20491 -13.18202 -13.09289 -12.93720 -12.71019 -12.60716 -12.41518 -12.25561 -12.10460 -11.97482 -11.83099 -11.16074 -11.08901 -11.05122 -10.78668 -10.30946 -9.86632 -9.84175 -9.47963 -9.33900 -9.09785 -8.71666 -8.66967 -8.27055 -6.53898 -6.25004 -3.95716 0.91874 2.18583 2.56711 2.80929 2.93309 3.02117 3.09803 3.19721 3.23544 3.27671 3.55077 4.17015 4.43742 4.52987 4.60116 4.71469 4.81386 5.00141 5.00506 5.06672 5.10320 5.29656 5.30275 5.35663 5.37003 5.43719 5.47065 5.53087 5.53851 5.59177 5.68487 5.82886 5.87964 5.87995 5.91900 5.97773 6.08858 6.13340 6.27034 6.55474 6.70872 7.30338 7.41311 7.56461 7.91260 8.31845 8.44076 9.20513 10.82333 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010100 B = 0.003304 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.550736 B = 8471.911551 C =10496.052641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.087 4.087 3 C -0.232 4.232 4 C 0.008 3.992 5 O -0.157 6.157 6 C -0.092 4.092 7 C 0.606 3.394 8 O -0.526 6.526 9 N -0.714 5.714 10 C 0.111 3.889 11 C 0.122 3.878 12 H 0.110 0.890 13 C -0.156 4.156 14 N -0.620 5.620 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.515 6.515 18 C -0.151 4.151 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.156 0.844 32 H 0.212 0.788 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.660 1.754 -1.827 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.251 4.251 4 C -0.063 4.063 5 O -0.052 6.052 6 C -0.144 4.144 7 C 0.393 3.607 8 O -0.405 6.405 9 N -0.365 5.365 10 C -0.014 4.014 11 C 0.018 3.982 12 H 0.128 0.872 13 C -0.214 4.214 14 N -0.357 5.357 15 C -0.065 4.065 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.301 4.301 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.173 0.827 32 H 0.229 0.771 33 H 0.247 0.753 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.449 1.488 -3.598 20.817 hybrid contribution 0.590 0.501 2.523 2.639 sum -19.860 1.989 -1.075 19.988 Atomic orbital electron populations 1.20410 0.88303 1.03448 1.02801 1.20622 0.97551 0.91015 0.99828 1.21736 0.92406 1.00114 1.10856 1.24489 1.00093 0.80574 1.01095 1.84146 1.28008 1.22811 1.70206 1.21796 0.81812 0.94706 1.16048 1.16496 0.85567 0.81931 0.76733 1.90822 1.15649 1.82564 1.51456 1.45859 1.10578 1.05922 1.74126 1.21820 0.96729 0.79747 1.03072 1.21299 0.90545 0.94173 0.92153 0.87176 1.22037 1.02171 0.94661 1.02562 1.47959 1.12215 1.68776 1.06736 1.21754 0.99917 1.02160 0.82651 1.20433 0.81011 0.75646 0.90855 1.90707 1.73024 1.51266 1.23878 1.23566 1.02843 1.04376 0.99323 1.85382 0.99905 1.86318 1.11693 1.22852 1.00086 1.52548 0.92873 0.90974 1.24982 0.96298 0.94781 0.97448 1.70011 1.11274 1.43568 1.25391 0.86182 0.79083 0.78216 0.82110 1.20263 1.20738 1.19692 0.90896 0.89587 0.91552 0.82668 0.77135 0.75299 0.90762 0.90022 0.92008 0.91153 0.91356 0.92500 0.90615 0.91324 0.89258 0.89207 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.82 36.01 0.35 -0.58 16 2 C -0.09 -1.04 6.20 -104.43 -0.65 -1.69 16 3 C -0.23 -2.33 10.83 -39.89 -0.43 -2.76 16 4 C 0.01 0.08 12.08 29.63 0.36 0.44 16 5 O -0.16 -2.12 10.40 5.02 0.05 -2.07 16 6 C -0.09 -1.24 7.13 -36.80 -0.26 -1.50 16 7 C 0.61 8.35 7.79 -12.86 -0.10 8.25 16 8 O -0.53 -7.90 14.74 5.20 0.08 -7.82 16 9 N -0.71 -9.00 5.38 -61.62 -0.33 -9.33 16 10 C 0.11 1.15 4.92 -4.04 -0.02 1.13 16 11 C 0.12 1.34 2.80 -67.93 -0.19 1.15 16 12 H 0.11 1.44 6.90 -51.93 -0.36 1.08 16 13 C -0.16 -1.32 9.19 37.16 0.34 -0.97 16 14 N -0.62 -7.95 2.24 -173.93 -0.39 -8.34 16 15 C 0.08 0.79 9.30 59.85 0.56 1.34 16 16 C 0.53 9.41 7.40 -10.98 -0.08 9.33 16 17 O -0.51 -10.91 15.19 5.55 0.08 -10.83 16 18 C -0.15 -2.94 4.71 36.01 0.17 -2.77 16 19 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 20 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.72 13.22 55.49 0.73 -24.98 16 24 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.98 6.44 -51.93 -0.33 0.64 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.21 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.41 5.72 7.62 -40.82 -0.31 5.41 16 34 H 0.07 0.72 6.88 -51.93 -0.36 0.37 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 41 H 0.07 0.58 6.53 -51.93 -0.34 0.24 16 42 H 0.09 1.63 7.40 -51.92 -0.38 1.24 16 43 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -34.84 384.84 -7.13 -41.97 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.16 Total: 4.64 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 0.24 Total: -1.30 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.01 Total: -42.66 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.21 Total: -20.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.84 -7.13 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280427475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.819 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds