Wall clock time and date at job start Sat Apr 11 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40358 * 126.64545 * 2 1 4 4 C 1.35132 * 107.11378 * 179.84068 * 3 2 1 5 5 O 1.33926 * 108.76759 * 0.42529 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72933 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.47287 * 295.00204 * 11 10 9 13 13 C 1.52997 * 109.47123 * 175.00202 * 11 10 9 14 14 N 1.46504 * 109.47163 * 54.99789 * 11 10 9 15 15 C 1.46503 * 119.99615 * 60.00276 * 14 11 10 16 16 C 1.34767 * 120.00113 * 239.99960 * 14 11 10 17 17 O 1.21283 * 120.00225 * 0.02562 * 16 14 11 18 18 C 1.50710 * 119.99791 * 180.02562 * 16 14 11 19 19 S 1.81006 * 109.46963 * 180.02562 * 18 16 14 20 20 C 1.76194 * 99.99652 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00648 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99621 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00327 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99639 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47531 * 90.00174 * 24 22 20 26 26 H 1.48505 * 109.46755 * 209.99839 * 24 22 20 27 27 H 1.48495 * 109.47481 * 329.99414 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68806 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68907 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68887 * 1 2 3 31 31 H 1.07998 * 126.44501 * 359.97238 * 3 2 1 32 32 H 1.08006 * 125.61408 * 180.12228 * 4 3 2 33 33 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 35 35 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 36 36 H 1.09005 * 109.47200 * 299.99626 * 13 11 10 37 37 H 1.09001 * 109.47477 * 60.00228 * 13 11 10 38 38 H 1.09005 * 109.46809 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.46973 * 89.99878 * 15 14 11 40 40 H 1.09000 * 109.47027 * 210.00014 * 15 14 11 41 41 H 1.08997 * 109.47075 * 329.99737 * 15 14 11 42 42 H 1.08998 * 109.47089 * 299.99858 * 18 16 14 43 43 H 1.08996 * 109.46744 * 59.99978 * 18 16 14 44 44 H 0.96998 * 120.00163 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0036 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0140 8 8 0.6968 -2.7614 -0.0159 9 7 2.7971 -3.4868 -0.0194 10 6 2.3598 -4.8850 -0.0269 11 6 3.5843 -5.8023 -0.0312 12 1 4.1359 -5.6677 -0.9617 13 6 3.1308 -7.2588 0.0866 14 7 4.4497 -5.4669 1.1023 15 6 3.9365 -5.5682 2.4707 16 6 5.7179 -5.0654 0.8862 17 8 6.1426 -4.9811 -0.2467 18 6 6.6083 -4.7209 2.0524 19 16 8.2367 -4.2203 1.4409 20 6 9.0471 -3.8841 2.9688 21 1 8.5171 -4.0126 3.9010 22 6 10.3668 -3.4539 2.9744 23 7 11.0130 -3.2978 1.8384 24 14 11.2261 -3.0981 4.5944 25 1 11.8871 -4.3337 5.0861 26 1 12.2464 -2.0384 4.3911 27 1 10.2283 -2.6393 5.5938 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 2.0306 2.1594 -0.0004 32 1 4.5046 1.2916 0.0064 33 1 3.7436 -3.2746 -0.0183 34 1 1.7610 -5.0831 0.8620 35 1 1.7609 -5.0736 -0.9179 36 1 2.5793 -7.3935 1.0171 37 1 2.4870 -7.5083 -0.7568 38 1 4.0033 -7.9122 0.0840 39 1 4.1264 -6.5697 2.8568 40 1 4.4376 -4.8344 3.1020 41 1 2.8636 -5.3759 2.4716 42 1 6.1653 -3.9013 2.6181 43 1 6.7144 -5.5925 2.6982 44 1 11.9353 -2.9975 1.8424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280427475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:11 Heat of formation + Delta-G solvation = -81.319834 kcal Electronic energy + Delta-G solvation = -27328.645641 eV Core-core repulsion = 23373.243772 eV Total energy + Delta-G solvation = -3955.401869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.71719 -41.32245 -40.34841 -37.76783 -35.66688 -34.90147 -34.58224 -33.24181 -31.43996 -30.22003 -28.95520 -27.86416 -27.65324 -27.10158 -23.86544 -22.88684 -22.17956 -21.10314 -20.36456 -19.60972 -19.14934 -18.34968 -17.49264 -17.44144 -17.15079 -16.88337 -16.81476 -16.58022 -16.18211 -15.70552 -15.39039 -14.66151 -14.57122 -14.55509 -14.48884 -14.07689 -13.98313 -13.88789 -13.79029 -13.54887 -13.47716 -13.30204 -13.15839 -13.06955 -12.90564 -12.83718 -12.78114 -12.59201 -12.00618 -11.70985 -11.31700 -11.14180 -10.89946 -10.70392 -10.34657 -10.26282 -9.77052 -9.60889 -8.65891 -8.34469 -6.11986 -0.01964 1.25042 1.36837 1.41948 1.45118 1.53761 1.55595 1.69395 2.00916 2.03705 2.21248 2.27550 2.99739 3.25841 3.52267 3.66487 3.77872 3.80498 3.91518 4.04091 4.13090 4.22277 4.26101 4.46388 4.50048 4.53962 4.60060 4.61890 4.68252 4.75530 4.76734 4.76929 4.90420 5.02246 5.09352 5.11193 5.20330 5.28517 5.41970 5.45768 5.54781 5.83078 6.19188 6.21286 6.27776 6.88729 7.07071 7.10419 8.74526 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010100 B = 0.003304 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.550736 B = 8471.911551 C =10496.052641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.090 4.090 3 C -0.231 4.231 4 C 0.004 3.996 5 O -0.181 6.181 6 C -0.128 4.128 7 C 0.603 3.397 8 O -0.544 6.544 9 N -0.715 5.715 10 C 0.114 3.886 11 C 0.124 3.876 12 H 0.085 0.915 13 C -0.148 4.148 14 N -0.604 5.604 15 C 0.070 3.930 16 C 0.533 3.467 17 O -0.560 6.560 18 C -0.125 4.125 19 S -0.145 6.145 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.016 3.984 23 N -0.910 5.910 24 Si 0.996 3.004 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.186 0.814 32 H 0.242 0.758 33 H 0.403 0.597 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.377 2.060 0.129 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.249 4.249 4 C -0.065 4.065 5 O -0.077 6.077 6 C -0.179 4.179 7 C 0.391 3.609 8 O -0.425 6.425 9 N -0.364 5.364 10 C -0.010 4.010 11 C 0.021 3.979 12 H 0.103 0.897 13 C -0.206 4.206 14 N -0.339 5.339 15 C -0.072 4.072 16 C 0.321 3.679 17 O -0.438 6.438 18 C -0.276 4.276 19 S 0.082 5.918 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.189 4.189 23 N -0.546 5.546 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.203 0.797 32 H 0.258 0.742 33 H 0.238 0.762 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.224 1.764 -1.621 22.353 hybrid contribution 0.994 0.421 1.884 2.171 sum -21.230 2.185 0.262 21.344 Atomic orbital electron populations 1.20436 0.87177 1.03818 1.03263 1.21054 0.98541 0.91269 0.98476 1.22105 0.91785 1.01030 1.10010 1.25270 1.01711 0.79750 0.99760 1.84125 1.28266 1.24405 1.70935 1.21919 0.82296 0.95112 1.18608 1.16604 0.85428 0.82365 0.76461 1.90796 1.16108 1.82970 1.52654 1.45944 1.09973 1.06713 1.73780 1.21931 0.96361 0.78410 1.04260 1.21417 0.89983 0.96195 0.90318 0.89661 1.22001 1.02167 0.91926 1.04555 1.47905 1.10579 1.66659 1.08735 1.22035 1.01187 1.03318 0.80655 1.20114 0.82376 0.75969 0.89458 1.90694 1.74322 1.53642 1.25109 1.23382 0.98849 1.05277 1.00105 1.85532 1.05377 1.87102 1.13770 1.23183 1.00677 1.52476 0.93064 0.90125 1.26080 0.97088 0.94285 1.01486 1.70172 1.11712 1.44664 1.28090 0.84993 0.77872 0.78243 0.77131 1.19398 1.20271 1.18251 0.90248 0.91186 0.89186 0.79660 0.74159 0.76196 0.89246 0.89040 0.90005 0.89163 0.92531 0.90475 0.90952 0.89005 0.87800 0.87631 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.82 71.24 0.70 -1.02 16 2 C -0.09 -2.08 6.20 -19.74 -0.12 -2.20 16 3 C -0.23 -4.22 10.83 22.07 0.24 -3.98 16 4 C 0.00 0.09 12.08 67.10 0.81 0.90 16 5 O -0.18 -4.96 10.40 -4.97 -0.05 -5.01 16 6 C -0.13 -3.49 7.13 24.07 0.17 -3.32 16 7 C 0.60 16.73 7.79 86.44 0.67 17.40 16 8 O -0.54 -16.24 14.74 -4.32 -0.06 -16.31 16 9 N -0.71 -18.02 5.38 -467.10 -2.51 -20.54 16 10 C 0.11 2.22 4.92 86.38 0.42 2.64 16 11 C 0.12 2.61 2.80 44.99 0.13 2.73 16 12 H 0.09 2.28 6.90 -2.38 -0.02 2.26 16 13 C -0.15 -2.17 9.19 71.98 0.66 -1.50 16 14 N -0.60 -14.85 2.24 -822.57 -1.85 -16.70 16 15 C 0.07 1.22 9.30 127.77 1.19 2.41 16 16 C 0.53 19.01 7.40 87.66 0.65 19.66 16 17 O -0.56 -24.73 15.19 -3.04 -0.05 -24.77 16 18 C -0.13 -4.88 4.71 71.24 0.34 -4.54 16 19 S -0.15 -7.90 20.57 -56.49 -1.16 -9.06 16 20 C -0.55 -30.75 9.50 67.96 0.65 -30.10 16 21 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 22 C 0.02 0.87 5.49 84.86 0.47 1.34 16 23 N -0.91 -55.17 13.22 21.65 0.29 -54.88 16 24 Si 1.00 43.00 29.55 68.60 2.03 45.03 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 27 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.57 6.44 -2.39 -0.02 1.55 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.19 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.24 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.40 11.57 7.62 -92.71 -0.71 10.87 16 34 H 0.09 1.51 6.88 -2.39 -0.02 1.49 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 0.89 7.67 -2.38 -0.02 0.88 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.35 6.44 -2.39 -0.02 1.34 16 41 H 0.09 1.23 6.53 -2.39 -0.02 1.21 16 42 H 0.10 3.72 7.40 -2.40 -0.02 3.71 16 43 H 0.11 3.76 8.11 -2.40 -0.02 3.74 16 44 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -79.02 384.84 3.92 -75.10 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.32 Total: 26.73 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.97 Total: 0.41 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -4.07 Total: -92.12 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.16 Total: -46.09 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -79.02 3.92 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280427475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.220 kcal (2) G-P(sol) polarization free energy of solvation -79.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds