Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34170 * 127.02383 * 2 1 4 4 O 1.34222 * 109.12675 * 179.83573 * 3 2 1 5 5 C 1.33654 * 110.90333 * 0.44769 * 4 3 2 6 6 C 1.36410 * 108.39863 * 359.73144 * 5 4 3 7 7 C 1.47385 * 127.19311 * 179.97438 * 6 5 4 8 8 O 1.21616 * 119.99705 * 149.45419 * 7 6 5 9 9 N 1.34770 * 120.00063 * 329.45624 * 7 6 5 10 10 C 1.46505 * 120.00098 * 4.29189 * 9 7 6 11 11 C 1.46501 * 120.00280 * 184.29046 * 9 7 6 12 12 C 1.52997 * 109.47264 * 90.00040 * 11 9 7 13 13 C 1.52998 * 109.47395 * 180.02562 * 12 11 9 14 14 N 1.46495 * 109.47644 * 179.97438 * 13 12 11 15 15 C 1.34770 * 120.00345 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99991 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00214 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47453 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00158 * 180.02562 * 18 17 15 20 20 H 1.07992 * 119.99861 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99820 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00418 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99812 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47671 * 59.99509 * 23 21 19 25 25 H 1.48505 * 109.47232 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46845 * 299.99382 * 23 21 19 27 27 H 1.08992 * 109.47304 * 269.68648 * 1 2 3 28 28 H 1.09000 * 109.46933 * 149.68420 * 1 2 3 29 29 H 1.09005 * 109.46682 * 29.68981 * 1 2 3 30 30 H 1.08002 * 125.44074 * 0.02562 * 3 2 1 31 31 H 1.08007 * 125.79960 * 179.73460 * 5 4 3 32 32 H 1.08991 * 109.47273 * 95.67375 * 10 9 7 33 33 H 1.08997 * 109.47091 * 215.67875 * 10 9 7 34 34 H 1.09007 * 109.46645 * 335.67192 * 10 9 7 35 35 H 1.09001 * 109.47138 * 210.00381 * 11 9 7 36 36 H 1.09001 * 109.47017 * 329.99917 * 11 9 7 37 37 H 1.09000 * 109.46862 * 299.99972 * 12 11 9 38 38 H 1.09001 * 109.47204 * 59.99991 * 12 11 9 39 39 H 1.09001 * 109.46784 * 300.00204 * 13 12 11 40 40 H 1.09001 * 109.47240 * 59.99660 * 13 12 11 41 41 H 0.97002 * 119.99561 * 0.02562 * 14 13 12 42 42 H 1.09001 * 109.47421 * 300.00543 * 17 15 14 43 43 H 1.09001 * 109.46986 * 60.00234 * 17 15 14 44 44 H 0.97001 * 120.00636 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5922 0.6587 0.0036 5 6 3.6623 -0.6760 -0.0037 6 6 2.3923 -1.1738 -0.0064 7 6 1.9913 -2.5920 -0.0147 8 8 0.9531 -2.9335 0.5188 9 7 2.7752 -3.5105 -0.6133 10 6 4.0700 -3.1153 -1.1733 11 6 2.3325 -4.9040 -0.7041 12 6 1.5450 -5.1056 -2.0002 13 6 1.0821 -6.5608 -2.0948 14 7 0.3275 -6.7537 -3.3355 15 6 -0.1811 -7.9657 -3.6335 16 8 -0.0144 -8.8966 -2.8742 17 6 -0.9568 -8.1642 -4.9101 18 16 -1.5045 -9.8858 -5.0218 19 6 -2.3583 -9.8359 -6.5624 20 1 -2.4128 -8.9126 -7.1198 21 6 -2.9616 -10.9830 -7.0589 22 7 -2.8955 -12.1083 -6.3793 23 14 -3.8661 -10.9303 -8.6925 24 1 -2.9242 -10.5265 -9.7671 25 1 -4.4166 -12.2755 -8.9972 26 1 -4.9762 -9.9473 -8.6120 27 1 -0.3633 -0.0056 1.0276 28 1 -0.3633 -0.8871 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9895 2.1010 0.0004 31 1 4.5703 -1.2609 -0.0068 32 1 4.8566 -3.3141 -0.4455 33 1 4.2626 -3.6863 -2.0816 34 1 4.0541 -2.0512 -1.4097 35 1 3.2014 -5.5622 -0.7008 36 1 1.6954 -5.1392 0.1485 37 1 0.6761 -4.4474 -2.0035 38 1 2.1821 -4.8705 -2.8528 39 1 1.9508 -7.2193 -2.0913 40 1 0.4449 -6.7956 -1.2422 41 1 0.1945 -6.0093 -3.9430 42 1 -1.8257 -7.5060 -4.9135 43 1 -0.3197 -7.9292 -5.7627 44 1 -3.3168 -12.9101 -6.7264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283495721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -82.609538 kcal Electronic energy + Delta-G solvation = -25642.695223 eV Core-core repulsion = 21687.237428 eV Total energy + Delta-G solvation = -3955.457795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.56606 -40.85695 -40.52113 -37.36947 -36.12307 -34.86555 -34.58916 -33.38086 -31.63944 -30.43741 -28.32117 -27.91450 -27.67487 -26.69971 -23.92941 -22.66748 -21.88259 -21.51987 -20.30782 -19.82776 -18.49247 -17.82068 -17.68671 -17.41899 -17.11260 -16.88308 -16.81122 -16.63848 -16.20231 -15.81092 -15.69666 -15.33292 -14.76345 -14.53455 -14.48645 -14.27208 -14.09409 -13.88051 -13.86935 -13.49182 -13.34697 -13.21471 -13.17610 -12.89224 -12.85942 -12.69785 -12.60822 -12.48586 -11.87412 -11.75327 -11.16469 -11.13258 -11.01287 -10.53008 -10.29163 -10.15187 -9.77051 -9.59670 -8.67655 -8.34700 -6.13356 0.40314 1.06167 1.25795 1.43869 1.45894 1.55629 1.58961 1.76167 2.06682 2.19682 2.26798 2.33366 2.99180 3.31392 3.48769 3.63262 3.83416 3.86878 3.95846 4.00913 4.13790 4.25220 4.27652 4.29524 4.42581 4.48017 4.49379 4.54384 4.62160 4.73950 4.77214 4.88096 4.89831 4.99001 5.02576 5.05409 5.09060 5.39912 5.41228 5.43875 5.47434 6.00233 6.19285 6.28587 6.47251 7.06168 7.07921 7.21545 8.74289 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.001608 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.300443 B =17411.545240 C =17967.671123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.171 4.171 3 C -0.029 4.029 4 O -0.175 6.175 5 C 0.035 3.965 6 C -0.266 4.266 7 C 0.578 3.422 8 O -0.580 6.580 9 N -0.607 5.607 10 C 0.048 3.952 11 C 0.119 3.881 12 C -0.127 4.127 13 C 0.125 3.875 14 N -0.714 5.714 15 C 0.533 3.467 16 O -0.566 6.566 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.263 1.263 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.242 0.758 31 H 0.253 0.747 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.416 0.584 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.746 31.586 10.364 38.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.173 4.173 3 C -0.094 4.094 4 O -0.069 6.069 5 C -0.035 4.035 6 C -0.270 4.270 7 C 0.368 3.632 8 O -0.461 6.461 9 N -0.338 5.338 10 C -0.093 4.093 11 C -0.005 4.005 12 C -0.166 4.166 13 C 0.000 4.000 14 N -0.368 5.368 15 C 0.318 3.682 16 O -0.444 6.444 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.185 1.185 25 H -0.204 1.204 26 H -0.187 1.187 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.258 0.742 31 H 0.269 0.731 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.252 0.748 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.715 29.895 11.927 37.232 hybrid contribution -1.328 0.590 -1.736 2.264 sum 17.387 30.485 10.191 36.544 Atomic orbital electron populations 1.20114 0.88730 1.02581 1.02254 1.21652 0.97566 0.91282 1.06778 1.24302 0.78969 1.00579 1.05578 1.83854 1.29816 1.22631 1.70604 1.25453 0.98969 0.80814 0.98221 1.21430 0.95188 0.93422 1.16998 1.17758 0.82931 0.84969 0.77539 1.90783 1.26588 1.81756 1.46947 1.47749 1.20550 1.08442 1.57082 1.22618 0.82763 1.03219 1.00695 1.21372 1.00392 0.81521 0.97174 1.21969 1.00889 0.93968 0.99809 1.21248 0.95717 0.97158 0.85830 1.45741 1.55772 1.10873 1.24396 1.20082 0.78595 0.82854 0.86628 1.90692 1.59627 1.42490 1.51639 1.23375 1.03188 1.02825 0.98726 1.85577 1.69704 1.07412 1.29765 1.23178 1.39967 0.99745 1.06721 0.89876 1.26142 0.96641 0.93917 1.02473 1.70175 1.43287 1.01084 1.40176 0.84994 0.78379 0.77798 0.76758 1.18543 1.20353 1.18743 0.91637 0.93579 0.89134 0.74238 0.73115 0.89411 0.88990 0.89002 0.86969 0.91511 0.92405 0.88730 0.90925 0.93128 0.74767 0.87420 0.86939 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.04 71.24 0.72 -0.56 16 2 C -0.17 -2.68 6.37 -18.49 -0.12 -2.80 16 3 C -0.03 -0.27 11.96 66.89 0.80 0.53 16 4 O -0.17 -1.68 10.52 4.39 0.05 -1.64 16 5 C 0.04 0.30 9.73 67.39 0.66 0.95 16 6 C -0.27 -4.31 5.78 -18.99 -0.11 -4.42 16 7 C 0.58 12.05 7.61 86.65 0.66 12.71 16 8 O -0.58 -17.59 16.00 -4.08 -0.07 -17.66 16 9 N -0.61 -8.28 2.87 -850.71 -2.44 -10.72 16 10 C 0.05 0.19 9.11 127.77 1.16 1.35 16 11 C 0.12 1.75 5.47 86.38 0.47 2.22 16 12 C -0.13 -2.00 5.65 30.59 0.17 -1.83 16 13 C 0.12 2.79 5.67 86.38 0.49 3.28 16 14 N -0.71 -18.50 5.56 -463.08 -2.57 -21.07 16 15 C 0.53 20.13 7.85 87.66 0.69 20.82 16 16 O -0.57 -26.86 15.86 -3.04 -0.05 -26.91 16 17 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 18 S -0.15 -8.55 20.57 -56.49 -1.16 -9.72 16 19 C -0.55 -31.63 9.50 67.95 0.65 -30.98 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 23 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 0.96 7.86 -2.39 -0.02 0.94 16 29 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.24 0.33 8.06 -2.91 -0.02 0.31 16 31 H 0.25 -0.06 5.95 -2.91 -0.02 -0.08 16 32 H 0.09 -0.05 7.92 -2.39 -0.02 -0.07 16 33 H 0.09 0.15 8.11 -2.39 -0.02 0.13 16 34 H 0.09 0.22 4.62 -2.38 -0.01 0.21 16 35 H 0.11 1.04 8.07 -2.39 -0.02 1.02 16 36 H 0.07 1.36 7.37 -2.39 -0.02 1.34 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.42 7.93 8.47 -92.71 -0.79 7.14 16 42 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -90.12 389.56 3.45 -86.68 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.24 Total: 13.64 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 7.14 Total: -2.31 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -4.73 Total: -87.94 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.07 Total: -46.21 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.72 kcal Total: -90.12 3.45 -86.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283495721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.068 kcal (2) G-P(sol) polarization free energy of solvation -90.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds