Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34180 * 127.02288 * 2 1 4 4 O 1.34214 * 109.12160 * 179.97438 * 3 2 1 5 5 C 1.33655 * 110.91124 * 359.72057 * 4 3 2 6 6 C 1.36420 * 108.39468 * 0.45589 * 5 4 3 7 7 C 1.47379 * 127.19075 * 179.83388 * 6 5 4 8 8 O 1.21606 * 119.99839 * 179.68172 * 7 6 5 9 9 N 1.34771 * 119.99728 * 359.68503 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46906 * 55.00224 * 12 11 10 14 14 C 1.52998 * 109.47705 * 174.99884 * 12 11 10 15 15 N 1.46497 * 109.47408 * 295.00294 * 12 11 10 16 16 C 1.34775 * 120.00290 * 154.99725 * 15 12 11 17 17 O 1.21284 * 120.00239 * 359.97438 * 16 15 12 18 18 C 1.50707 * 119.99766 * 179.97438 * 16 15 12 19 19 S 1.81004 * 109.46836 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99807 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00353 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99760 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00100 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46821 * 59.99763 * 24 22 20 26 26 H 1.48498 * 109.47224 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46970 * 299.99860 * 24 22 20 28 28 H 1.09007 * 109.46698 * 270.02296 * 1 2 3 29 29 H 1.09000 * 109.47528 * 30.02007 * 1 2 3 30 30 H 1.08999 * 109.47548 * 150.02553 * 1 2 3 31 31 H 1.07998 * 125.43655 * 359.97438 * 3 2 1 32 32 H 1.07999 * 125.80026 * 180.28796 * 5 4 3 33 33 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 35 35 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 36 36 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 37 37 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 38 38 H 1.09000 * 109.47812 * 179.97438 * 14 12 11 39 39 H 1.09001 * 109.46974 * 300.00556 * 14 12 11 40 40 H 1.09000 * 109.46929 * 59.99736 * 14 12 11 41 41 H 0.97003 * 119.99849 * 334.99597 * 15 12 11 42 42 H 1.08993 * 109.47314 * 299.99790 * 18 16 15 43 43 H 1.08997 * 109.47088 * 60.00406 * 18 16 15 44 44 H 0.97001 * 119.99230 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 2.3922 -1.1739 0.0006 7 6 1.9913 -2.5921 0.0009 8 8 0.8125 -2.8907 0.0005 9 7 2.9312 -3.5580 0.0016 10 6 2.5326 -4.9678 0.0013 11 6 3.7820 -5.8509 0.0016 12 6 3.3658 -7.3232 0.0019 13 1 2.6999 -7.5127 -0.8400 14 6 4.6098 -8.2050 -0.1236 15 7 2.6711 -7.6341 1.2536 16 6 1.7935 -8.6558 1.3015 17 8 1.5785 -9.3177 0.3082 18 6 1.0794 -8.9759 2.5894 19 16 -0.0233 -10.3882 2.3329 20 6 -0.7076 -10.5397 3.9495 21 1 -0.4031 -9.8590 4.7308 22 6 -1.6380 -11.5339 4.2189 23 7 -2.0095 -12.3632 3.2665 24 14 -2.3640 -11.6940 5.9326 25 1 -3.0682 -10.4368 6.2913 26 1 -3.3264 -12.8247 5.9588 27 1 -1.2750 -11.9476 6.9098 28 1 -0.3633 0.0004 1.0278 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9895 2.1011 -0.0004 32 1 4.5702 -1.2608 0.0133 33 1 3.8715 -3.3199 0.0016 34 1 1.9387 -5.1776 0.8908 35 1 1.9400 -5.1776 -0.8892 36 1 4.3756 -5.6410 -0.8882 37 1 4.3750 -5.6412 0.8917 38 1 4.3134 -9.2539 -0.1229 39 1 5.1267 -7.9736 -1.0549 40 1 5.2759 -8.0155 0.7182 41 1 2.8428 -7.1046 2.0480 42 1 1.8109 -9.2209 3.3594 43 1 0.4949 -8.1118 2.9052 44 1 -2.6600 -13.0576 3.4548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284450118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -74.204072 kcal Electronic energy + Delta-G solvation = -25786.761152 eV Core-core repulsion = 21831.667845 eV Total energy + Delta-G solvation = -3955.093307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.99063 -39.85587 -39.29277 -36.64092 -34.73582 -34.19734 -32.40504 -32.03706 -31.11701 -29.14910 -28.44164 -27.58277 -25.46181 -24.72013 -22.92740 -21.63270 -20.89232 -20.41377 -20.28141 -18.47230 -17.79990 -16.69726 -16.55994 -16.43497 -16.18463 -15.89003 -15.42880 -15.21950 -14.84693 -14.78032 -14.26917 -13.84077 -13.80868 -13.69187 -13.55510 -13.33565 -13.21326 -12.90405 -12.85712 -12.63212 -12.16029 -11.94840 -11.87459 -11.78632 -11.54066 -11.10448 -11.02134 -11.01403 -10.74550 -10.25600 -9.96026 -9.80116 -9.40905 -9.37258 -9.11701 -9.04117 -8.91159 -8.21614 -6.47253 -6.19171 -3.89511 0.91325 1.63255 2.47051 2.77229 3.04027 3.04916 3.11122 3.25491 3.29282 3.32898 3.72378 4.05839 4.19260 4.22902 4.42392 4.52134 4.68586 4.72060 4.88125 5.00887 5.15793 5.16477 5.20581 5.29835 5.31808 5.41596 5.45550 5.54492 5.56615 5.60202 5.64865 5.67422 5.74726 5.91378 5.99363 6.04987 6.13097 6.15316 6.17490 6.51062 6.65350 7.13331 7.61646 7.70746 7.92039 8.37440 8.62885 9.26016 10.88187 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.002009 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.714059 B =13932.275910 C =15524.976961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.131 4.131 3 C -0.047 4.047 4 O -0.172 6.172 5 C 0.019 3.981 6 C -0.232 4.232 7 C 0.583 3.417 8 O -0.525 6.525 9 N -0.729 5.729 10 C 0.118 3.882 11 C -0.137 4.137 12 C 0.147 3.853 13 H 0.092 0.908 14 C -0.163 4.163 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.208 0.792 32 H 0.210 0.790 33 H 0.396 0.604 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.859 26.718 -6.948 32.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C -0.113 4.113 4 O -0.067 6.067 5 C -0.051 4.051 6 C -0.237 4.237 7 C 0.370 3.630 8 O -0.401 6.401 9 N -0.381 5.381 10 C -0.005 4.005 11 C -0.176 4.176 12 C 0.041 3.959 13 H 0.110 0.890 14 C -0.221 4.221 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.225 0.775 32 H 0.227 0.773 33 H 0.230 0.770 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.733 25.408 -8.679 31.119 hybrid contribution 0.318 0.913 2.693 2.861 sum 16.050 26.321 -5.986 31.405 Atomic orbital electron populations 1.20268 0.88155 1.03365 1.02814 1.21473 0.97443 0.90316 1.04009 1.23751 0.79543 0.99793 1.08224 1.83781 1.29767 1.22267 1.70902 1.24386 0.98661 0.81283 1.00811 1.21461 0.93444 0.94312 1.14460 1.17268 0.85632 0.83700 0.76350 1.90824 1.17242 1.83173 1.48907 1.45841 1.09210 1.06540 1.76499 1.21441 0.97086 0.78398 1.03596 1.22108 0.97446 0.94344 1.03661 1.20769 0.94352 0.92136 0.88644 0.89027 1.22172 0.97046 1.01305 1.01581 1.46128 1.45008 1.34996 1.12964 1.20298 0.78212 0.79170 0.90297 1.90700 1.63062 1.48890 1.36363 1.23540 1.03207 1.06500 0.97254 1.85380 1.48448 1.32790 1.16670 1.22828 1.29329 1.19916 0.96321 0.91004 1.24994 0.95678 0.94751 0.98181 1.70012 1.30807 1.17094 1.32379 0.86226 0.78790 0.77892 0.82606 1.19933 1.20818 1.19963 0.91004 0.91627 0.89800 0.77521 0.77340 0.77028 0.90661 0.90881 0.89720 0.90607 0.91405 0.91874 0.92547 0.76929 0.89286 0.89234 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.00 36.01 0.36 -0.41 16 2 C -0.13 -1.15 6.37 -102.49 -0.65 -1.81 16 3 C -0.05 -0.30 11.96 29.30 0.35 0.05 16 4 O -0.17 -1.16 10.52 7.65 0.08 -1.08 16 5 C 0.02 0.11 11.61 30.08 0.35 0.46 16 6 C -0.23 -2.09 6.31 -103.27 -0.65 -2.74 16 7 C 0.58 6.43 7.81 -12.54 -0.10 6.33 16 8 O -0.52 -8.10 15.41 5.27 0.08 -8.02 16 9 N -0.73 -5.57 5.55 -61.40 -0.34 -5.91 16 10 C 0.12 1.06 5.56 -4.04 -0.02 1.04 16 11 C -0.14 -0.89 4.87 -26.74 -0.13 -1.02 16 12 C 0.15 1.51 2.57 -67.94 -0.17 1.34 16 13 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 14 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16 15 N -0.74 -9.22 4.53 -53.81 -0.24 -9.46 16 16 C 0.53 9.78 7.81 -10.98 -0.09 9.69 16 17 O -0.52 -11.53 15.53 5.55 0.09 -11.44 16 18 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 24 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.92 6.91 -51.93 -0.36 0.56 16 31 H 0.21 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.21 0.26 7.47 -52.49 -0.39 -0.13 16 33 H 0.40 1.54 7.44 -40.82 -0.30 1.24 16 34 H 0.08 0.83 7.75 -51.93 -0.40 0.42 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.40 3.90 8.60 -40.82 -0.35 3.55 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 393.08 15.07 5.92 5.92 Total: -1.00 -38.92 393.08 -7.30 -46.22 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.40 Total: 0.97 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 0.02 Total: -4.32 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.15 Total: -41.06 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.25 Total: -20.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.92 -7.30 -46.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284450118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.986 kcal (2) G-P(sol) polarization free energy of solvation -38.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds