Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34180 * 127.02288 * 2 1 4 4 O 1.34214 * 109.12160 * 179.97438 * 3 2 1 5 5 C 1.33655 * 110.91124 * 359.72057 * 4 3 2 6 6 C 1.36420 * 108.39468 * 0.45589 * 5 4 3 7 7 C 1.47379 * 127.19075 * 179.83388 * 6 5 4 8 8 O 1.21606 * 119.99839 * 179.68172 * 7 6 5 9 9 N 1.34771 * 119.99728 * 359.68503 * 7 6 5 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46906 * 55.00224 * 12 11 10 14 14 C 1.52998 * 109.47705 * 174.99884 * 12 11 10 15 15 N 1.46497 * 109.47408 * 295.00294 * 12 11 10 16 16 C 1.34775 * 120.00290 * 154.99725 * 15 12 11 17 17 O 1.21284 * 120.00239 * 359.97438 * 16 15 12 18 18 C 1.50707 * 119.99766 * 179.97438 * 16 15 12 19 19 S 1.81004 * 109.46836 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99807 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00353 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99953 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99760 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00100 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46821 * 59.99763 * 24 22 20 26 26 H 1.48498 * 109.47224 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46970 * 299.99860 * 24 22 20 28 28 H 1.09007 * 109.46698 * 270.02296 * 1 2 3 29 29 H 1.09000 * 109.47528 * 30.02007 * 1 2 3 30 30 H 1.08999 * 109.47548 * 150.02553 * 1 2 3 31 31 H 1.07998 * 125.43655 * 359.97438 * 3 2 1 32 32 H 1.07999 * 125.80026 * 180.28796 * 5 4 3 33 33 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 35 35 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 36 36 H 1.09002 * 109.47153 * 300.00008 * 11 10 9 37 37 H 1.08998 * 109.47533 * 59.99637 * 11 10 9 38 38 H 1.09000 * 109.47812 * 179.97438 * 14 12 11 39 39 H 1.09001 * 109.46974 * 300.00556 * 14 12 11 40 40 H 1.09000 * 109.46929 * 59.99736 * 14 12 11 41 41 H 0.97003 * 119.99849 * 334.99597 * 15 12 11 42 42 H 1.08993 * 109.47314 * 299.99790 * 18 16 15 43 43 H 1.08997 * 109.47088 * 60.00406 * 18 16 15 44 44 H 0.97001 * 119.99230 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6623 -0.6759 0.0070 6 6 2.3922 -1.1739 0.0006 7 6 1.9913 -2.5921 0.0009 8 8 0.8125 -2.8907 0.0005 9 7 2.9312 -3.5580 0.0016 10 6 2.5326 -4.9678 0.0013 11 6 3.7820 -5.8509 0.0016 12 6 3.3658 -7.3232 0.0019 13 1 2.6999 -7.5127 -0.8400 14 6 4.6098 -8.2050 -0.1236 15 7 2.6711 -7.6341 1.2536 16 6 1.7935 -8.6558 1.3015 17 8 1.5785 -9.3177 0.3082 18 6 1.0794 -8.9759 2.5894 19 16 -0.0233 -10.3882 2.3329 20 6 -0.7076 -10.5397 3.9495 21 1 -0.4031 -9.8590 4.7308 22 6 -1.6380 -11.5339 4.2189 23 7 -2.0095 -12.3632 3.2665 24 14 -2.3640 -11.6940 5.9326 25 1 -3.0682 -10.4368 6.2913 26 1 -3.3264 -12.8247 5.9588 27 1 -1.2750 -11.9476 6.9098 28 1 -0.3633 0.0004 1.0278 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9895 2.1011 -0.0004 32 1 4.5702 -1.2608 0.0133 33 1 3.8715 -3.3199 0.0016 34 1 1.9387 -5.1776 0.8908 35 1 1.9400 -5.1776 -0.8892 36 1 4.3756 -5.6410 -0.8882 37 1 4.3750 -5.6412 0.8917 38 1 4.3134 -9.2539 -0.1229 39 1 5.1267 -7.9736 -1.0549 40 1 5.2759 -8.0155 0.7182 41 1 2.8428 -7.1046 2.0480 42 1 1.8109 -9.2209 3.3594 43 1 0.4949 -8.1118 2.9052 44 1 -2.6600 -13.0576 3.4548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284450118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -104.165614 kcal Electronic energy + Delta-G solvation = -25788.060382 eV Core-core repulsion = 21831.667845 eV Total energy + Delta-G solvation = -3956.392537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.50405 -40.90278 -40.40104 -37.67577 -35.68548 -34.79445 -34.59502 -33.14626 -31.86494 -30.23329 -29.52129 -28.16655 -27.66736 -25.43329 -23.65220 -22.57808 -21.63677 -21.39476 -21.06329 -19.84641 -19.02960 -17.94532 -17.45142 -17.19172 -16.91136 -16.87828 -16.79119 -16.39043 -16.33089 -15.85251 -15.69295 -14.91959 -14.79034 -14.56900 -14.45894 -14.36201 -14.27867 -14.00402 -13.94633 -13.43896 -13.31175 -13.18381 -13.02202 -12.87666 -12.62398 -12.50920 -12.43685 -12.38345 -11.91527 -11.74457 -11.14327 -11.13795 -10.90857 -10.63014 -10.29379 -10.19820 -10.05782 -9.60956 -8.67676 -8.35523 -6.13694 0.36730 1.06739 1.26180 1.42757 1.45828 1.56019 1.63312 1.98770 2.15237 2.25777 2.29930 2.32059 2.98225 3.31523 3.58983 3.66060 3.73315 3.84552 4.01405 4.07137 4.13018 4.28241 4.34329 4.43606 4.47801 4.49506 4.51392 4.64142 4.75599 4.83138 4.89470 4.93273 5.00887 5.05981 5.06751 5.14899 5.33786 5.35946 5.40147 5.48496 5.57012 6.00051 6.18423 6.51409 6.53640 7.05355 7.20744 7.27634 8.73469 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.002009 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.714059 B =13932.275910 C =15524.976961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.171 4.171 3 C -0.032 4.032 4 O -0.173 6.173 5 C 0.053 3.947 6 C -0.273 4.273 7 C 0.578 3.422 8 O -0.585 6.585 9 N -0.707 5.707 10 C 0.119 3.881 11 C -0.117 4.117 12 C 0.141 3.859 13 H 0.063 0.937 14 C -0.157 4.157 15 N -0.710 5.710 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.260 1.260 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.241 0.759 32 H 0.257 0.743 33 H 0.419 0.581 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.029 0.971 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.414 0.586 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.266 29.554 -5.461 36.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.173 4.173 3 C -0.097 4.097 4 O -0.068 6.068 5 C -0.018 4.018 6 C -0.278 4.278 7 C 0.367 3.633 8 O -0.466 6.466 9 N -0.360 5.360 10 C -0.005 4.005 11 C -0.154 4.154 12 C 0.036 3.964 13 H 0.081 0.919 14 C -0.215 4.215 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.283 4.283 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.185 1.185 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.257 0.743 32 H 0.273 0.727 33 H 0.257 0.743 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.251 0.749 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.240 28.305 -7.181 34.970 hybrid contribution -0.622 0.154 2.156 2.249 sum 18.618 28.459 -5.024 34.377 Atomic orbital electron populations 1.20169 0.88984 1.02797 1.02238 1.21694 0.97595 0.91576 1.06407 1.24271 0.78932 1.00527 1.05957 1.83833 1.29763 1.22672 1.70487 1.25162 0.98835 0.80962 0.96818 1.21453 0.95246 0.93218 1.17890 1.17702 0.85198 0.85056 0.75351 1.90795 1.19770 1.84131 1.51920 1.45585 1.09977 1.05364 1.75055 1.21312 0.98108 0.79711 1.01353 1.22003 0.96383 0.90251 1.06806 1.20994 0.93968 0.95166 0.86258 0.91907 1.22116 0.96775 0.98584 1.03998 1.45912 1.42944 1.32800 1.14779 1.20003 0.78972 0.80177 0.88821 1.90688 1.64979 1.51080 1.37548 1.23390 1.02329 1.03366 0.99170 1.85551 1.51277 1.37524 1.18100 1.23171 1.29655 1.20364 0.96358 0.90014 1.26154 0.95959 0.94120 1.03038 1.70183 1.31591 1.17897 1.35042 0.84998 0.78131 0.78216 0.76610 1.18851 1.20288 1.18467 0.91673 0.89356 0.93113 0.74283 0.72692 0.74345 0.92918 0.93539 0.86532 0.87348 0.95205 0.89242 0.90357 0.74857 0.87124 0.87836 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 10.00 71.24 0.71 -0.85 16 2 C -0.17 -2.94 6.37 -18.49 -0.12 -3.05 16 3 C -0.03 -0.33 11.96 66.89 0.80 0.47 16 4 O -0.17 -1.71 10.52 4.46 0.05 -1.66 16 5 C 0.05 0.41 11.61 67.40 0.78 1.20 16 6 C -0.27 -4.61 6.31 -18.99 -0.12 -4.73 16 7 C 0.58 12.76 7.81 86.65 0.68 13.43 16 8 O -0.58 -19.41 15.41 -4.05 -0.06 -19.47 16 9 N -0.71 -9.45 5.55 -466.42 -2.59 -12.04 16 10 C 0.12 2.03 5.56 86.38 0.48 2.51 16 11 C -0.12 -1.10 4.87 30.59 0.15 -0.95 16 12 C 0.14 2.69 2.57 44.99 0.12 2.81 16 13 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 14 C -0.16 -2.67 9.48 71.98 0.68 -1.99 16 15 N -0.71 -16.98 4.53 -442.54 -2.00 -18.98 16 16 C 0.53 19.87 7.81 87.66 0.68 20.55 16 17 O -0.56 -26.45 15.53 -3.04 -0.05 -26.49 16 18 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 19 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 20 C -0.55 -32.02 9.50 67.96 0.65 -31.37 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.70 5.49 84.86 0.47 1.17 16 23 N -0.91 -57.02 13.22 21.65 0.29 -56.74 16 24 Si 1.00 44.50 29.55 68.60 2.03 46.53 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.25 6.91 -2.39 -0.02 1.23 16 31 H 0.24 0.58 8.06 -2.91 -0.02 0.56 16 32 H 0.26 -0.84 7.47 -2.91 -0.02 -0.86 16 33 H 0.42 1.52 7.44 -92.71 -0.69 0.83 16 34 H 0.05 1.15 7.75 -2.39 -0.02 1.13 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.41 7.10 8.60 -92.71 -0.80 6.30 16 42 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 43 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -93.82 393.08 2.44 -91.37 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -0.45 Total: 13.00 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 6.40 Total: -5.71 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -4.31 Total: -87.76 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -0.06 Total: -47.63 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -93.82 2.44 -91.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284450118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.791 kcal (2) G-P(sol) polarization free energy of solvation -93.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds