Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41382 * 126.58161 * 2 1 4 4 C 1.34505 * 106.84567 * 179.97438 * 3 2 1 5 5 O 1.34307 * 108.42111 * 359.73124 * 4 3 2 6 6 C 1.34304 * 109.47132 * 0.43938 * 5 4 3 7 7 C 1.50700 * 125.78579 * 179.82898 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.68837 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 13 13 C 1.53002 * 109.47088 * 89.99979 * 12 10 8 14 14 N 1.46499 * 109.47479 * 179.97438 * 13 12 10 15 15 C 1.34774 * 120.00096 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00093 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99860 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47070 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99948 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00138 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00088 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00392 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99910 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46826 * 90.00364 * 23 21 19 25 25 H 1.48499 * 109.47470 * 210.00338 * 23 21 19 26 26 H 1.48497 * 109.47425 * 330.00517 * 23 21 19 27 27 H 1.08998 * 109.47554 * 270.04736 * 1 2 3 28 28 H 1.08995 * 109.46894 * 30.05613 * 1 2 3 29 29 H 1.09001 * 109.46766 * 150.04953 * 1 2 3 30 30 H 1.08007 * 126.57476 * 359.96955 * 3 2 1 31 31 H 1.07999 * 125.79214 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47210 * 149.69130 * 7 6 5 33 33 H 1.08994 * 109.47551 * 29.68783 * 7 6 5 34 34 H 1.08998 * 109.46921 * 89.99095 * 11 10 8 35 35 H 1.08994 * 109.46996 * 209.99677 * 11 10 8 36 36 H 1.09001 * 109.46578 * 329.99540 * 11 10 8 37 37 H 1.09001 * 109.47567 * 210.00057 * 12 10 8 38 38 H 1.09005 * 109.47076 * 330.00563 * 12 10 8 39 39 H 1.08999 * 109.47707 * 300.00330 * 13 12 10 40 40 H 1.09005 * 109.46685 * 60.00344 * 13 12 10 41 41 H 0.97004 * 119.99938 * 0.02562 * 14 13 12 42 42 H 1.08993 * 109.47491 * 300.00941 * 17 15 14 43 43 H 1.09005 * 109.46920 * 60.00492 * 17 15 14 44 44 H 0.97003 * 120.00419 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6156 0.6811 0.0006 5 8 3.5848 -0.6616 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0011 8 6 1.7006 -2.9956 -1.4196 9 8 1.9401 -2.2450 -2.3417 10 7 1.3048 -4.2602 -1.6656 11 6 1.0160 -5.1672 -0.5519 12 6 1.1632 -4.7280 -3.0467 13 6 2.4903 -5.3226 -3.5224 14 7 2.3486 -5.7909 -4.9032 15 6 3.3969 -6.3560 -5.5341 16 8 4.4575 -6.4772 -4.9585 17 6 3.2509 -6.8383 -6.9544 18 16 4.8205 -7.5429 -7.5166 19 6 4.3757 -8.0115 -9.1560 20 1 3.3741 -7.8296 -9.5167 21 6 5.3123 -8.6153 -9.9834 22 7 4.9802 -8.9649 -11.2082 23 14 7.0445 -8.9306 -9.3593 24 1 7.1058 -10.2724 -8.7259 25 1 7.9980 -8.8760 -10.4964 26 1 7.4067 -7.8943 -8.3594 27 1 -0.3634 0.0008 1.0276 28 1 -0.3633 0.8894 -0.5147 29 1 -0.3633 -0.8905 -0.5131 30 1 2.0366 2.1690 -0.0005 31 1 4.5060 1.2924 0.0011 32 1 0.8938 -2.5930 0.5146 33 1 2.5902 -3.1320 0.5154 34 1 -0.0361 -5.0844 -0.2794 35 1 1.2341 -6.1921 -0.8520 36 1 1.6353 -4.8998 0.3043 37 1 0.3857 -5.4904 -3.0942 38 1 0.8900 -3.8899 -3.6879 39 1 3.2679 -4.5603 -3.4749 40 1 2.7634 -6.1607 -2.8811 41 1 1.5002 -5.6943 -5.3635 42 1 2.4733 -7.6005 -7.0012 43 1 2.9777 -6.0006 -7.5962 44 1 5.6349 -9.3866 -11.7866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284497997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -56.760470 kcal Electronic energy + Delta-G solvation = -25958.620312 eV Core-core repulsion = 22004.283416 eV Total energy + Delta-G solvation = -3954.336895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.89117 -40.33634 -39.18597 -36.40396 -34.69399 -34.48261 -32.60169 -32.42846 -30.67464 -29.32869 -28.42761 -27.09413 -26.17046 -25.58707 -23.30342 -21.76931 -20.75621 -20.27686 -19.38772 -17.91020 -17.71662 -17.37180 -16.76565 -16.50212 -16.15068 -15.83799 -15.57454 -15.42181 -14.94452 -14.62718 -14.19807 -14.10974 -13.76379 -13.60671 -13.51090 -13.43341 -13.27882 -13.04259 -12.88879 -12.82015 -12.78776 -12.57681 -12.25613 -12.21103 -11.77195 -11.48076 -11.25758 -10.99801 -10.61311 -10.32045 -9.87342 -9.85402 -9.57624 -9.18003 -9.03064 -8.97239 -8.64906 -8.49070 -6.90845 -6.27947 -3.99664 1.38402 2.15773 2.22634 2.43063 2.73308 2.86837 2.97734 3.33334 3.39356 3.52084 3.70495 4.05193 4.22110 4.34290 4.48426 4.58044 4.59374 4.61125 4.69224 4.73728 4.76019 4.82313 4.96163 5.11059 5.12643 5.15443 5.19068 5.26594 5.32538 5.44722 5.51135 5.59618 5.69647 5.72516 5.78172 5.89572 6.00118 6.02933 6.25971 6.49004 6.83473 6.86404 7.57609 7.72035 7.95087 8.42567 8.48274 9.18249 10.81211 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.001824 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.270738 B =15345.244082 C =15905.631438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.164 4.164 3 C -0.212 4.212 4 C -0.032 4.032 5 O -0.170 6.170 6 C -0.002 4.002 7 C -0.057 4.057 8 C 0.513 3.487 9 O -0.517 6.517 10 N -0.615 5.615 11 C 0.072 3.928 12 C 0.106 3.894 13 C 0.108 3.892 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.123 4.123 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.147 0.853 31 H 0.203 0.797 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.400 0.600 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.618 15.324 28.668 35.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.165 4.165 3 C -0.231 4.231 4 C -0.099 4.099 5 O -0.066 6.066 6 C -0.053 4.053 7 C -0.097 4.097 8 C 0.300 3.700 9 O -0.391 6.391 10 N -0.350 5.350 11 C -0.071 4.071 12 C -0.017 4.017 13 C -0.018 4.018 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.274 4.274 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.165 0.835 31 H 0.220 0.780 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.234 0.766 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.417 15.253 28.967 34.672 hybrid contribution -0.946 0.067 -0.909 1.314 sum -12.363 15.320 28.058 34.276 Atomic orbital electron populations 1.20171 0.89325 1.02731 1.01727 1.20157 0.96999 0.92051 1.07296 1.21680 0.92601 0.99764 1.09098 1.23989 0.99824 0.80448 1.05688 1.83998 1.28475 1.22923 1.71210 1.21198 0.81393 0.94834 1.07832 1.20092 1.04076 0.89917 0.95614 1.20486 0.76862 0.81422 0.91192 1.90789 1.47995 1.54315 1.45999 1.47687 1.68529 1.11743 1.07022 1.21941 1.01329 0.94636 0.89165 1.21600 0.96985 1.00522 0.82626 1.21572 0.97830 0.99324 0.83077 1.45789 1.14937 1.63949 1.14331 1.20284 0.83316 0.76667 0.87973 1.90704 1.26915 1.54423 1.67219 1.23274 1.05263 1.04287 0.94581 1.84804 1.12192 1.78090 1.16501 1.22317 1.02395 1.46007 0.96147 0.89357 1.24714 0.98879 0.93731 0.94017 1.69937 1.35558 1.39620 1.06566 0.86732 0.84064 0.81042 0.80004 1.19214 1.19936 1.15921 0.91465 0.91355 0.91980 0.83478 0.78030 0.85986 0.86870 0.91943 0.90272 0.90652 0.89513 0.88964 0.91238 0.91511 0.76602 0.88417 0.88356 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.99 36.01 0.36 -0.20 16 2 C -0.16 -1.55 6.16 -104.74 -0.65 -2.20 16 3 C -0.21 -1.89 10.87 -39.71 -0.43 -2.32 16 4 C -0.03 -0.28 12.09 29.41 0.36 0.07 16 5 O -0.17 -1.91 10.65 5.70 0.06 -1.85 16 6 C 0.00 -0.02 5.81 -35.62 -0.21 -0.23 16 7 C -0.06 -0.39 4.41 -29.03 -0.13 -0.52 16 8 C 0.51 5.05 7.67 -10.98 -0.08 4.97 16 9 O -0.52 -7.57 15.61 5.55 0.09 -7.48 16 10 N -0.61 -4.58 2.87 -181.57 -0.52 -5.10 16 11 C 0.07 0.25 10.25 59.85 0.61 0.87 16 12 C 0.11 0.87 5.52 -4.04 -0.02 0.85 16 13 C 0.11 1.26 6.00 -4.04 -0.02 1.24 16 14 N -0.73 -9.50 5.56 -60.29 -0.33 -9.84 16 15 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 16 O -0.52 -11.56 15.86 5.56 0.09 -11.48 16 17 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 18 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 19 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 20 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 23 Si 0.86 22.02 27.74 -169.99 -4.71 17.30 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.41 7.78 -51.93 -0.40 0.01 16 30 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.12 0.44 7.73 -51.93 -0.40 0.04 16 33 H 0.11 0.56 7.40 -51.93 -0.38 0.17 16 34 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 36 H 0.07 0.15 6.43 -51.93 -0.33 -0.18 16 37 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 38 H 0.09 0.88 7.42 -51.93 -0.39 0.49 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.40 3.84 8.47 -40.82 -0.35 3.49 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -39.83 390.90 -7.00 -46.83 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.47 Total: -0.47 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 0.14 Total: -2.20 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.08 Total: -40.89 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.24 Total: -20.81 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.30 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.83 -7.00 -46.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284497997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.927 kcal (2) G-P(sol) polarization free energy of solvation -39.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds