Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40364 * 126.43959 * 2 1 4 4 C 1.36537 * 106.70683 * 179.97438 * 3 2 1 5 5 C 1.46656 * 125.98952 * 179.97438 * 4 3 2 6 6 O 1.21702 * 119.99743 * 353.97958 * 5 4 3 7 7 N 1.34774 * 120.00614 * 173.97221 * 5 4 3 8 8 C 1.46497 * 120.00718 * 184.58290 * 7 5 4 9 9 C 1.46506 * 119.99537 * 4.30895 * 7 5 4 10 10 C 1.52999 * 109.47230 * 83.56033 * 9 7 5 11 11 N 1.46496 * 109.47214 * 180.02562 * 10 9 7 12 12 C 1.34771 * 119.99971 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.50709 * 119.99993 * 179.97438 * 12 11 10 15 15 S 1.80998 * 109.47195 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99983 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00238 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00289 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99817 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00269 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47237 * 89.99832 * 20 18 16 22 22 H 1.48504 * 109.47174 * 209.99496 * 20 18 16 23 23 H 1.48493 * 109.47499 * 329.99674 * 20 18 16 24 24 O 1.34916 * 108.02504 * 0.22829 * 4 3 2 25 25 C 1.33931 * 109.38317 * 359.61738 * 24 4 3 26 26 C 1.50702 * 125.61638 * 180.17297 * 25 24 4 27 27 H 1.08998 * 109.46990 * 89.98287 * 1 2 3 28 28 H 1.09004 * 109.47024 * 209.97572 * 1 2 3 29 29 H 1.08994 * 109.47136 * 329.97792 * 1 2 3 30 30 H 1.08002 * 126.64759 * 0.03151 * 3 2 1 31 31 H 1.08998 * 109.47075 * 274.78264 * 8 7 5 32 32 H 1.09011 * 109.46894 * 34.78113 * 8 7 5 33 33 H 1.08992 * 109.47362 * 154.77651 * 8 7 5 34 34 H 1.09004 * 109.47002 * 203.56196 * 9 7 5 35 35 H 1.08999 * 109.46906 * 323.55832 * 9 7 5 36 36 H 1.08996 * 109.47298 * 300.00369 * 10 9 7 37 37 H 1.09002 * 109.46463 * 59.99896 * 10 9 7 38 38 H 0.97004 * 119.99910 * 359.97438 * 11 10 9 39 39 H 1.09004 * 109.46940 * 299.99700 * 14 12 11 40 40 H 1.08999 * 109.46963 * 59.99331 * 14 12 11 41 41 H 0.96994 * 120.00409 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.46873 * 270.24614 * 26 25 24 43 43 H 1.08998 * 109.46911 * 30.24239 * 26 25 24 44 44 H 1.08991 * 109.47232 * 150.24784 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 0.0006 5 6 4.8378 1.4942 0.0003 6 8 4.7503 2.7029 -0.1111 7 7 6.0484 0.9148 0.1235 8 6 7.2512 1.7451 0.2242 9 6 6.1610 -0.5454 0.1627 10 6 6.1713 -1.0947 -1.2652 11 7 6.2832 -2.5549 -1.2259 12 6 6.3120 -3.2596 -2.3743 13 8 6.2448 -2.6851 -3.4402 14 6 6.4277 -4.7617 -2.3339 15 16 6.4398 -5.4116 -4.0232 16 6 6.5798 -7.1354 -3.6868 17 1 6.6300 -7.4841 -2.6659 18 6 6.6268 -8.0453 -4.7339 19 7 6.5662 -7.6204 -5.9783 20 14 6.7746 -9.8729 -4.3773 21 1 5.4181 -10.4642 -4.2525 22 1 7.5035 -10.5367 -5.4880 23 1 7.5196 -10.0711 -3.1082 24 8 3.5858 -0.6803 -0.0042 25 6 2.3097 -1.0870 0.0007 26 6 1.8455 -2.5208 0.0014 27 1 -0.3633 0.0003 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5141 30 1 2.0266 2.1625 0.0005 31 1 7.5974 2.0058 -0.7759 32 1 7.0190 2.6554 0.7772 33 1 8.0318 1.1920 0.7463 34 1 7.0864 -0.8251 0.6663 35 1 5.3120 -0.9607 0.7057 36 1 5.2460 -0.8150 -1.7688 37 1 7.0203 -0.6793 -1.8081 38 1 6.3373 -3.0144 -0.3733 39 1 7.3530 -5.0414 -1.8300 40 1 5.5786 -5.1771 -1.7912 41 1 6.5987 -8.2561 -6.7101 42 1 1.7336 -2.8669 -1.0262 43 1 2.5803 -3.1403 0.5155 44 1 0.8869 -2.5920 0.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284498621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -56.217351 kcal Electronic energy + Delta-G solvation = -26987.948674 eV Core-core repulsion = 23033.635330 eV Total energy + Delta-G solvation = -3954.313344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.05959 -40.01645 -39.12255 -36.64198 -34.68483 -34.27148 -32.45286 -32.31054 -30.50752 -29.15406 -28.63330 -27.70180 -25.70147 -25.49122 -23.52356 -22.05379 -21.15209 -20.53558 -19.53978 -17.97308 -17.48788 -16.94604 -16.73222 -16.23890 -16.18853 -15.72353 -15.35149 -15.14994 -14.82713 -14.31369 -14.12180 -13.99679 -13.86891 -13.59189 -13.33541 -13.21260 -13.17590 -13.03784 -12.97145 -12.65700 -12.55552 -12.49663 -12.30112 -12.08032 -11.82820 -11.44904 -11.08713 -11.04962 -10.79247 -10.60678 -9.96993 -9.84874 -9.50638 -9.19465 -9.09612 -8.94530 -8.60568 -8.26059 -6.52862 -6.24019 -3.94908 0.77802 2.00795 2.22723 2.58176 2.84580 3.06529 3.08218 3.20145 3.26677 3.31636 3.70792 4.11965 4.17912 4.46024 4.49716 4.54611 4.60971 4.85893 4.93927 5.02057 5.11114 5.12000 5.13325 5.16909 5.20908 5.37228 5.38082 5.42152 5.45869 5.53231 5.58604 5.60191 5.67787 5.72771 5.85035 5.92453 6.02555 6.09493 6.20177 6.50897 6.60547 6.88373 7.56874 7.63651 7.65810 8.32581 8.57255 9.21194 10.83377 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.002549 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.534663 B =10979.916003 C =12345.219334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.197 4.197 3 C -0.107 4.107 4 C -0.088 4.088 5 C 0.606 3.394 6 O -0.519 6.519 7 N -0.606 5.606 8 C 0.086 3.914 9 C 0.094 3.906 10 C 0.109 3.891 11 N -0.735 5.735 12 C 0.532 3.468 13 O -0.515 6.515 14 C -0.152 4.152 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 O -0.152 6.152 25 C 0.025 3.975 26 C -0.082 4.082 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.158 0.842 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 14.867 18.992 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.199 4.199 3 C -0.128 4.128 4 C -0.140 4.140 5 C 0.395 3.605 6 O -0.397 6.397 7 N -0.338 5.338 8 C -0.056 4.056 9 C -0.029 4.029 10 C -0.016 4.016 11 N -0.390 5.390 12 C 0.318 3.682 13 O -0.389 6.389 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 O -0.048 6.048 25 C -0.027 4.027 26 C -0.138 4.138 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.176 0.824 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.790 16.275 16.946 24.457 hybrid contribution 0.200 -1.993 1.765 2.670 sum -6.591 14.282 18.711 24.444 Atomic orbital electron populations 1.20194 0.88605 1.02647 1.02424 1.20200 0.97562 0.91684 1.10420 1.21786 0.90495 1.00391 1.00086 1.21751 0.95826 0.80645 1.15748 1.16638 0.81086 0.86165 0.76631 1.90878 1.85735 1.12739 1.50323 1.47570 1.06677 1.06990 1.72587 1.21771 0.85532 0.95655 1.02598 1.22024 1.04407 0.79152 0.97355 1.21581 1.02770 0.80974 0.96288 1.45793 1.77785 1.06288 1.09135 1.20312 0.75266 0.89283 0.83300 1.90718 1.47263 1.71525 1.29372 1.23522 1.04863 0.93357 1.08537 1.85446 1.96153 1.03948 0.97788 1.22859 1.58591 0.91451 0.95502 0.90925 1.24997 0.94567 0.99602 0.94431 1.70016 1.46724 1.35115 0.98392 0.86167 0.78356 0.82850 0.78117 1.20268 1.20756 1.19698 1.84255 1.28195 1.21426 1.70956 1.22767 0.81017 0.97319 1.01644 1.20468 1.01910 0.86866 1.04556 0.91173 0.91435 0.91434 0.82431 0.91968 0.90422 0.90458 0.88985 0.88402 0.91420 0.91408 0.76845 0.89188 0.89209 0.92160 0.89028 0.90020 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.17 36.01 0.37 -0.20 16 2 C -0.20 -1.93 6.14 -104.93 -0.64 -2.58 16 3 C -0.11 -1.18 10.58 -39.40 -0.42 -1.60 16 4 C -0.09 -1.05 6.58 -36.80 -0.24 -1.29 16 5 C 0.61 7.55 7.58 -12.86 -0.10 7.46 16 6 O -0.52 -7.74 16.58 5.19 0.09 -7.66 16 7 N -0.61 -6.01 2.89 -183.13 -0.53 -6.54 16 8 C 0.09 0.66 10.39 59.85 0.62 1.29 16 9 C 0.09 0.80 5.14 -4.04 -0.02 0.78 16 10 C 0.11 1.30 5.51 -4.04 -0.02 1.28 16 11 N -0.73 -9.18 5.56 -60.30 -0.33 -9.51 16 12 C 0.53 9.63 7.85 -10.98 -0.09 9.54 16 13 O -0.52 -11.70 15.86 5.56 0.09 -11.61 16 14 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 20 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 24 O -0.15 -1.67 6.15 4.99 0.03 -1.64 16 25 C 0.02 0.25 7.31 -35.42 -0.26 -0.01 16 26 C -0.08 -0.59 10.21 36.01 0.37 -0.22 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.37 7.13 -51.93 -0.37 0.00 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.62 7.64 -51.92 -0.40 0.22 16 33 H 0.08 0.40 7.78 -51.93 -0.40 -0.01 16 34 H 0.09 0.55 7.77 -51.93 -0.40 0.15 16 35 H 0.10 0.82 5.36 -51.93 -0.28 0.54 16 36 H 0.07 0.98 7.13 -51.93 -0.37 0.61 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 3.57 8.47 -40.82 -0.35 3.22 16 39 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 40 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.47 7.12 -51.93 -0.37 0.10 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -36.97 388.02 -7.62 -44.58 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.29 Total: 0.46 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -0.01 Total: -0.98 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.13 Total: -41.21 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.20 Total: -20.90 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.97 -7.62 -44.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284498621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.635 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds