Wall clock time and date at job start Sat Apr 11 2020 05:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40364 * 126.43959 * 2 1 4 4 C 1.36537 * 106.70683 * 179.97438 * 3 2 1 5 5 C 1.46656 * 125.98952 * 179.97438 * 4 3 2 6 6 O 1.21702 * 119.99743 * 353.97958 * 5 4 3 7 7 N 1.34774 * 120.00614 * 173.97221 * 5 4 3 8 8 C 1.46497 * 120.00718 * 184.58290 * 7 5 4 9 9 C 1.46506 * 119.99537 * 4.30895 * 7 5 4 10 10 C 1.52999 * 109.47230 * 83.56033 * 9 7 5 11 11 N 1.46496 * 109.47214 * 180.02562 * 10 9 7 12 12 C 1.34771 * 119.99971 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.50709 * 119.99993 * 179.97438 * 12 11 10 15 15 S 1.80998 * 109.47195 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99983 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00238 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00289 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99817 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00269 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47237 * 89.99832 * 20 18 16 22 22 H 1.48504 * 109.47174 * 209.99496 * 20 18 16 23 23 H 1.48493 * 109.47499 * 329.99674 * 20 18 16 24 24 O 1.34916 * 108.02504 * 0.22829 * 4 3 2 25 25 C 1.33931 * 109.38317 * 359.61738 * 24 4 3 26 26 C 1.50702 * 125.61638 * 180.17297 * 25 24 4 27 27 H 1.08998 * 109.46990 * 89.98287 * 1 2 3 28 28 H 1.09004 * 109.47024 * 209.97572 * 1 2 3 29 29 H 1.08994 * 109.47136 * 329.97792 * 1 2 3 30 30 H 1.08002 * 126.64759 * 0.03151 * 3 2 1 31 31 H 1.08998 * 109.47075 * 274.78264 * 8 7 5 32 32 H 1.09011 * 109.46894 * 34.78113 * 8 7 5 33 33 H 1.08992 * 109.47362 * 154.77651 * 8 7 5 34 34 H 1.09004 * 109.47002 * 203.56196 * 9 7 5 35 35 H 1.08999 * 109.46906 * 323.55832 * 9 7 5 36 36 H 1.08996 * 109.47298 * 300.00369 * 10 9 7 37 37 H 1.09002 * 109.46463 * 59.99896 * 10 9 7 38 38 H 0.97004 * 119.99910 * 359.97438 * 11 10 9 39 39 H 1.09004 * 109.46940 * 299.99700 * 14 12 11 40 40 H 1.08999 * 109.46963 * 59.99331 * 14 12 11 41 41 H 0.96994 * 120.00409 * 180.02562 * 19 18 16 42 42 H 1.09005 * 109.46873 * 270.24614 * 26 25 24 43 43 H 1.08998 * 109.46911 * 30.24239 * 26 25 24 44 44 H 1.08991 * 109.47232 * 150.24784 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 0.0006 5 6 4.8378 1.4942 0.0003 6 8 4.7503 2.7029 -0.1111 7 7 6.0484 0.9148 0.1235 8 6 7.2512 1.7451 0.2242 9 6 6.1610 -0.5454 0.1627 10 6 6.1713 -1.0947 -1.2652 11 7 6.2832 -2.5549 -1.2259 12 6 6.3120 -3.2596 -2.3743 13 8 6.2448 -2.6851 -3.4402 14 6 6.4277 -4.7617 -2.3339 15 16 6.4398 -5.4116 -4.0232 16 6 6.5798 -7.1354 -3.6868 17 1 6.6300 -7.4841 -2.6659 18 6 6.6268 -8.0453 -4.7339 19 7 6.5662 -7.6204 -5.9783 20 14 6.7746 -9.8729 -4.3773 21 1 5.4181 -10.4642 -4.2525 22 1 7.5035 -10.5367 -5.4880 23 1 7.5196 -10.0711 -3.1082 24 8 3.5858 -0.6803 -0.0042 25 6 2.3097 -1.0870 0.0007 26 6 1.8455 -2.5208 0.0014 27 1 -0.3633 0.0003 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5141 30 1 2.0266 2.1625 0.0005 31 1 7.5974 2.0058 -0.7759 32 1 7.0190 2.6554 0.7772 33 1 8.0318 1.1920 0.7463 34 1 7.0864 -0.8251 0.6663 35 1 5.3120 -0.9607 0.7057 36 1 5.2460 -0.8150 -1.7688 37 1 7.0203 -0.6793 -1.8081 38 1 6.3373 -3.0144 -0.3733 39 1 7.3530 -5.0414 -1.8300 40 1 5.5786 -5.1771 -1.7912 41 1 6.5987 -8.2561 -6.7101 42 1 1.7336 -2.8669 -1.0262 43 1 2.5803 -3.1403 0.5155 44 1 0.8869 -2.5920 0.5151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284498621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:50 Heat of formation + Delta-G solvation = -82.176225 kcal Electronic energy + Delta-G solvation = -26989.074336 eV Core-core repulsion = 23033.635330 eV Total energy + Delta-G solvation = -3955.439005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.85217 -40.97008 -40.47764 -37.62228 -35.56147 -35.32719 -34.56115 -33.05184 -31.79098 -29.89428 -29.57540 -28.60117 -27.62800 -26.37443 -24.49934 -22.84259 -22.02548 -21.81338 -20.40397 -19.82328 -18.45921 -17.92908 -17.61061 -17.56949 -17.22245 -16.85776 -16.68052 -16.51729 -16.21382 -15.70528 -15.26796 -14.97975 -14.74131 -14.62378 -14.41352 -14.21385 -14.09377 -13.94199 -13.73555 -13.65678 -13.52852 -13.24877 -13.14781 -13.13837 -12.97109 -12.87305 -12.59240 -12.50263 -12.35230 -11.71918 -11.55344 -11.12212 -11.03169 -10.77534 -10.24157 -10.19942 -10.03579 -9.37460 -8.64723 -8.32555 -6.10530 -0.08169 1.21726 1.26792 1.41841 1.44339 1.50714 1.58531 1.61578 1.84356 1.95181 2.29128 2.41612 3.01899 3.29731 3.37771 3.74049 3.76455 3.76926 3.85119 4.02490 4.23167 4.28600 4.33786 4.38595 4.46022 4.54365 4.56084 4.57019 4.63545 4.65324 4.72772 4.85884 4.87328 4.91181 5.04471 5.06019 5.12159 5.26368 5.35388 5.44376 5.53837 5.80581 6.05621 6.22098 6.49307 6.76254 7.08986 7.24526 8.76580 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.002549 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.534663 B =10979.916003 C =12345.219334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.205 4.205 3 C -0.117 4.117 4 C -0.110 4.110 5 C 0.599 3.401 6 O -0.555 6.555 7 N -0.602 5.602 8 C 0.081 3.919 9 C 0.103 3.897 10 C 0.115 3.885 11 N -0.703 5.703 12 C 0.535 3.465 13 O -0.569 6.569 14 C -0.126 4.126 15 S -0.157 6.157 16 C -0.543 4.543 17 H 0.086 0.914 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.256 1.256 24 O -0.155 6.155 25 C 0.018 3.982 26 C -0.082 4.082 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.421 0.579 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.270 0.730 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 13.156 22.020 26.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.206 4.206 3 C -0.138 4.138 4 C -0.161 4.161 5 C 0.389 3.611 6 O -0.436 6.436 7 N -0.332 5.332 8 C -0.060 4.060 9 C -0.020 4.020 10 C -0.011 4.011 11 N -0.358 5.358 12 C 0.321 3.679 13 O -0.447 6.447 14 C -0.277 4.277 15 S 0.071 5.929 16 C -0.690 4.690 17 H 0.104 0.896 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.180 1.180 24 O -0.051 6.051 25 C -0.035 4.035 26 C -0.137 4.137 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.177 0.823 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.123 0.877 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.259 0.741 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.728 14.558 20.054 25.678 hybrid contribution 0.159 -1.365 0.888 1.636 sum -6.569 13.193 20.941 25.607 Atomic orbital electron populations 1.20283 0.86644 1.04005 1.02877 1.20563 0.98989 0.91096 1.09991 1.22040 0.90842 1.01103 0.99820 1.21759 0.95973 0.81171 1.17228 1.16843 0.82015 0.85888 0.76368 1.90844 1.86363 1.14141 1.52241 1.47681 1.06543 1.07757 1.71253 1.21971 0.85392 0.95935 1.02733 1.22067 1.06716 0.78165 0.95046 1.21569 1.00971 0.80117 0.98436 1.45406 1.75295 1.06550 1.08563 1.20127 0.75020 0.88913 0.83843 1.90712 1.50126 1.72208 1.31677 1.23350 1.07129 0.93974 1.03282 1.85682 1.96504 1.05418 1.05336 1.23201 1.58189 0.91465 0.96189 0.89639 1.26134 0.93904 1.05160 0.94059 1.70190 1.48113 1.36988 0.99655 0.84953 0.78759 0.75876 0.78399 1.19288 1.20628 1.18011 1.84228 1.28940 1.20867 1.71108 1.23393 0.80666 0.98634 1.00762 1.20626 1.03397 0.85132 1.04584 0.91079 0.89549 0.90669 0.82251 0.92515 0.90913 0.87005 0.85091 0.87740 0.94152 0.92376 0.74141 0.86824 0.86683 0.92089 0.89680 0.88970 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.17 71.24 0.72 -0.28 16 2 C -0.21 -3.85 6.14 -20.06 -0.12 -3.97 16 3 C -0.12 -2.63 10.58 22.39 0.24 -2.39 16 4 C -0.11 -2.63 6.58 24.07 0.16 -2.47 16 5 C 0.60 15.08 7.58 86.44 0.66 15.73 16 6 O -0.56 -17.16 16.58 -4.35 -0.07 -17.23 16 7 N -0.60 -11.22 2.89 -851.51 -2.46 -13.68 16 8 C 0.08 1.12 10.39 127.77 1.33 2.45 16 9 C 0.10 1.48 5.14 86.38 0.44 1.93 16 10 C 0.11 2.58 5.51 86.38 0.48 3.06 16 11 N -0.70 -15.87 5.56 -463.07 -2.57 -18.45 16 12 C 0.54 18.76 7.85 87.66 0.69 19.45 16 13 O -0.57 -26.31 15.86 -3.02 -0.05 -26.36 16 14 C -0.13 -4.65 6.16 71.24 0.44 -4.22 16 15 S -0.16 -8.48 20.57 -56.49 -1.16 -9.64 16 16 C -0.54 -30.05 9.50 67.95 0.65 -29.40 16 17 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 18 C 0.01 0.67 5.49 84.86 0.47 1.14 16 19 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 20 Si 1.00 42.50 29.55 68.60 2.03 44.53 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 O -0.15 -3.26 6.15 -5.06 -0.03 -3.29 16 25 C 0.02 0.33 7.31 24.97 0.18 0.51 16 26 C -0.08 -1.00 10.21 71.24 0.73 -0.27 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.73 7.13 -2.38 -0.02 0.71 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.11 7.64 -2.38 -0.02 1.09 16 33 H 0.11 0.77 7.78 -2.39 -0.02 0.75 16 34 H 0.13 0.95 7.77 -2.39 -0.02 0.94 16 35 H 0.10 1.46 5.36 -2.39 -0.01 1.45 16 36 H 0.04 1.17 7.13 -2.39 -0.02 1.15 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.42 5.84 8.47 -92.71 -0.79 5.05 16 39 H 0.11 3.68 8.14 -2.39 -0.02 3.67 16 40 H 0.12 3.68 8.14 -2.40 -0.02 3.66 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.12 0.83 7.12 -2.39 -0.02 0.81 16 Total: -1.00 -84.59 388.02 3.26 -81.34 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.24 Total: 16.70 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 7.05 Total: 1.26 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -4.75 Total: -87.31 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.15 Total: -46.88 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -84.59 3.26 -81.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284498621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.841 kcal (2) G-P(sol) polarization free energy of solvation -84.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds