Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35132 * 125.61877 * 2 1 4 4 C 1.40367 * 107.11389 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.64330 * 180.02562 * 4 3 2 6 6 C 1.36543 * 106.71117 * 0.02562 * 4 3 2 7 7 C 1.46659 * 125.99049 * 179.97438 * 6 4 3 8 8 O 1.21695 * 119.99844 * 359.97438 * 7 6 4 9 9 N 1.34770 * 119.99947 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99875 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47295 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47289 * 294.99658 * 11 10 9 13 13 C 1.53005 * 109.47452 * 174.99734 * 11 10 9 14 14 N 1.46506 * 109.47289 * 54.99786 * 11 10 9 15 15 C 1.34774 * 120.00251 * 205.00099 * 14 11 10 16 16 O 1.21282 * 119.99905 * 0.02562 * 15 14 11 17 17 C 1.50696 * 119.99967 * 180.02562 * 15 14 11 18 18 S 1.81007 * 109.47019 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99724 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00304 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99673 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99962 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99808 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47419 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.47049 * 119.99946 * 23 21 19 26 26 H 1.48498 * 109.47265 * 239.99896 * 23 21 19 27 27 O 1.33937 * 125.61256 * 180.33300 * 2 1 3 28 28 H 1.08997 * 109.47550 * 89.99508 * 1 2 3 29 29 H 1.09004 * 109.47141 * 209.99953 * 1 2 3 30 30 H 1.09005 * 109.47020 * 329.99340 * 1 2 3 31 31 H 1.07996 * 126.44086 * 0.04115 * 3 2 1 32 32 H 1.08996 * 109.47224 * 269.97671 * 5 4 3 33 33 H 1.08999 * 109.47386 * 29.98441 * 5 4 3 34 34 H 1.09001 * 109.46822 * 149.97516 * 5 4 3 35 35 H 0.96999 * 120.00413 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47485 * 59.99811 * 10 9 7 37 37 H 1.09008 * 109.47071 * 299.99783 * 10 9 7 38 38 H 1.09001 * 109.46812 * 300.00216 * 13 11 10 39 39 H 1.09002 * 109.46935 * 59.99874 * 13 11 10 40 40 H 1.08992 * 109.47061 * 179.97438 * 13 11 10 41 41 H 0.97006 * 119.99584 * 25.00028 * 14 11 10 42 42 H 1.09007 * 109.47090 * 299.99748 * 17 15 14 43 43 H 1.08990 * 109.47220 * 59.99884 * 17 15 14 44 44 H 0.97005 * 120.00123 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 4.8617 1.5142 -0.0003 6 6 3.5823 -0.7118 -0.0015 7 6 4.7414 -1.6103 -0.0029 8 8 5.8680 -1.1502 -0.0038 9 7 4.5588 -2.9456 -0.0043 10 6 5.7166 -3.8432 -0.0051 11 6 5.2360 -5.2957 -0.0059 12 1 4.7098 -5.5048 0.9255 13 6 6.4400 -6.2313 -0.1326 14 7 4.3301 -5.5097 -1.1373 15 6 3.4086 -6.4919 -1.0864 16 8 3.3290 -7.1984 -0.1037 17 6 2.4773 -6.7124 -2.2503 18 16 1.3656 -8.0921 -1.8806 19 6 0.4165 -8.1264 -3.3647 20 1 0.6198 -7.4160 -4.1523 21 6 -0.5925 -9.0666 -3.5216 22 7 -0.8400 -9.9328 -2.5619 23 14 -1.5992 -9.1026 -5.0947 24 1 -1.1260 -8.0330 -6.0098 25 1 -1.4402 -10.4237 -5.7541 26 1 -3.0314 -8.8801 -4.7711 27 8 2.2869 -1.0889 -0.0063 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.9613 2.1260 0.0006 32 1 5.1599 1.7222 -1.0278 33 1 4.6514 2.4519 0.5140 34 1 5.6684 0.9912 0.5134 35 1 3.6609 -3.3124 -0.0039 36 1 6.3186 -3.6606 0.8851 37 1 6.3187 -3.6588 -0.8950 38 1 6.9662 -6.0222 -1.0640 39 1 7.1139 -6.0721 0.7092 40 1 6.0975 -7.2661 -0.1327 41 1 4.3936 -4.9444 -1.9230 42 1 1.8908 -5.8098 -2.4224 43 1 3.0591 -6.9432 -3.1426 44 1 -1.5449 -10.5901 -2.6716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285711570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -73.554002 kcal Electronic energy + Delta-G solvation = -26475.015186 eV Core-core repulsion = 22519.950069 eV Total energy + Delta-G solvation = -3955.065118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.01248 -40.02718 -39.18968 -36.47564 -34.57250 -33.74227 -32.74497 -32.45907 -31.50588 -28.68657 -28.25808 -28.12406 -25.90826 -25.51011 -22.12825 -21.87720 -21.50206 -20.40549 -19.89935 -18.48264 -17.82986 -16.87737 -16.59945 -16.57454 -16.00158 -15.47284 -15.08195 -14.94914 -14.83116 -14.45971 -14.16478 -13.94120 -13.53080 -13.46374 -13.31968 -13.21670 -13.14493 -12.98909 -12.89408 -12.76684 -12.65940 -12.58836 -12.08776 -11.92643 -11.87189 -11.19934 -11.09512 -11.04957 -10.78129 -10.41505 -9.94185 -9.83806 -9.55799 -9.42063 -9.11629 -9.03848 -8.69318 -8.27113 -6.53469 -6.24917 -3.95499 0.75889 2.00654 2.32641 2.83552 2.89123 2.98164 3.03913 3.19190 3.25812 3.30205 3.65263 4.17307 4.23265 4.36147 4.47974 4.54933 4.87253 4.96632 5.05551 5.08439 5.10448 5.11005 5.12093 5.22809 5.30145 5.34637 5.42587 5.44283 5.51598 5.54262 5.62266 5.81198 5.83674 5.84195 5.89738 5.97017 6.09905 6.12957 6.19099 6.53468 6.58810 7.15801 7.56861 7.60648 7.78007 8.32423 8.52673 9.20762 10.82526 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.002689 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.825473 B =10410.410864 C =12536.383807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.031 3.969 3 C -0.228 4.228 4 C -0.080 4.080 5 C -0.094 4.094 6 C -0.094 4.094 7 C 0.607 3.393 8 O -0.522 6.522 9 N -0.719 5.719 10 C 0.113 3.887 11 C 0.131 3.869 12 H 0.096 0.904 13 C -0.161 4.161 14 N -0.738 5.738 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 O -0.160 6.160 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.399 0.601 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.698 22.251 4.962 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.022 4.022 3 C -0.247 4.247 4 C -0.083 4.083 5 C -0.151 4.151 6 C -0.146 4.146 7 C 0.394 3.606 8 O -0.400 6.400 9 N -0.371 5.371 10 C -0.011 4.011 11 C 0.026 3.974 12 H 0.114 0.886 13 C -0.220 4.220 14 N -0.393 5.393 15 C 0.320 3.680 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 O -0.056 6.056 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.246 0.754 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.233 0.767 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.192 20.896 6.679 24.190 hybrid contribution -1.028 0.999 -2.582 2.954 sum 9.164 21.895 4.097 24.087 Atomic orbital electron populations 1.20472 0.84357 1.04731 1.04307 1.22850 0.94376 0.83965 1.00966 1.21472 0.91802 0.99832 1.11626 1.20613 0.96388 0.92137 0.99187 1.20427 0.93832 0.97929 1.02900 1.21714 0.82031 0.94038 1.16814 1.16481 0.86083 0.81355 0.76720 1.90844 1.22092 1.76001 1.51066 1.45904 1.11135 1.05371 1.74681 1.21791 0.88077 0.87499 1.03723 1.21150 0.91747 0.92680 0.91829 0.88592 1.22112 0.96920 1.00706 1.02219 1.46161 1.36393 1.36612 1.20175 1.20334 0.79867 0.79181 0.88618 1.90710 1.69824 1.44964 1.33253 1.23541 1.01287 1.06793 0.98869 1.85394 1.37010 1.35435 1.25442 1.22902 1.21080 1.21118 1.03212 0.90898 1.24994 0.96513 0.94595 0.97498 1.70024 1.30643 1.17520 1.32080 0.86120 0.79485 0.78161 0.81746 1.19615 1.20554 1.20555 1.84038 1.15770 1.34789 1.71009 0.89274 0.89756 0.88886 0.82702 0.90771 0.91478 0.89512 0.75407 0.89585 0.90369 0.92134 0.91448 0.90968 0.76715 0.89254 0.89196 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.41 36.00 0.37 -0.12 16 2 C 0.03 0.29 7.31 -35.42 -0.26 0.03 16 3 C -0.23 -2.07 10.73 -39.89 -0.43 -2.50 16 4 C -0.08 -0.86 6.20 -104.43 -0.65 -1.51 16 5 C -0.09 -0.85 9.81 36.01 0.35 -0.50 16 6 C -0.09 -1.12 7.13 -36.80 -0.26 -1.38 16 7 C 0.61 7.33 7.79 -12.86 -0.10 7.23 16 8 O -0.52 -7.19 14.74 5.19 0.08 -7.12 16 9 N -0.72 -7.45 5.38 -61.63 -0.33 -7.78 16 10 C 0.11 1.03 5.23 -4.04 -0.02 1.01 16 11 C 0.13 1.38 2.73 -67.93 -0.19 1.20 16 12 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 13 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 14 N -0.74 -8.97 4.52 -53.80 -0.24 -9.21 16 15 C 0.53 9.29 7.81 -10.99 -0.09 9.20 16 16 O -0.51 -10.94 15.52 5.56 0.09 -10.86 16 17 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 19 C -0.53 -15.00 9.50 30.94 0.29 -14.70 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 23 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 O -0.16 -1.85 10.40 4.96 0.05 -1.79 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.90 6.45 -51.93 -0.33 0.57 16 35 H 0.41 4.29 7.89 -40.82 -0.32 3.97 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 4.00 8.60 -40.82 -0.35 3.64 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -35.25 393.42 -7.86 -43.12 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.44 Total: 4.56 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.49 Total: -4.08 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.16 Total: -42.11 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.21 Total: -19.77 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.25 -7.86 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285711570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.435 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds